Ccdc122 (coiled-coil domain containing 122) - Rat Genome Database

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Gene: Ccdc122 (coiled-coil domain containing 122) Mus musculus
Analyze
Symbol: Ccdc122
Name: coiled-coil domain containing 122
RGD ID: 1616648
MGI Page MGI
Description: Orthologous to human CCDC122 (coiled-coil domain containing 122).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4933415L06Rik; coiled-coil domain-containing protein 122; MGC106895
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391477,274,212 - 77,349,703 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1477,274,212 - 77,349,697 (+)EnsemblGRCm39 Ensembl
GRCm381477,036,772 - 77,112,263 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1477,036,772 - 77,112,257 (+)EnsemblGRCm38mm10GRCm38
MGSCv371477,436,579 - 77,512,011 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361475,770,927 - 75,846,359 (+)NCBIMGSCv36mm8
Celera1474,545,464 - 74,614,373 (+)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1440.63NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21677750   PMID:30973865  


Genomics

Comparative Map Data
Ccdc122
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391477,274,212 - 77,349,703 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1477,274,212 - 77,349,697 (+)EnsemblGRCm39 Ensembl
GRCm381477,036,772 - 77,112,263 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1477,036,772 - 77,112,257 (+)EnsemblGRCm38mm10GRCm38
MGSCv371477,436,579 - 77,512,011 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361475,770,927 - 75,846,359 (+)NCBIMGSCv36mm8
Celera1474,545,464 - 74,614,373 (+)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1440.63NCBI
CCDC122
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381343,819,018 - 43,879,740 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1343,823,909 - 43,879,740 (-)EnsemblGRCh38hg38GRCh38
GRCh371344,410,488 - 44,453,876 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361343,308,488 - 43,351,826 (-)NCBINCBI36Build 36hg18NCBI36
Celera1325,466,632 - 25,509,968 (-)NCBICelera
Cytogenetic Map13q14.11NCBI
HuRef1325,212,269 - 25,255,599 (-)NCBIHuRef
CHM1_11344,378,059 - 44,421,397 (-)NCBICHM1_1
T2T-CHM13v2.01343,037,902 - 43,098,601 (-)NCBIT2T-CHM13v2.0
Ccdc122
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81558,816,927 - 58,899,200 (+)NCBIGRCr8
mRatBN7.21552,407,717 - 52,470,163 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1552,407,717 - 52,470,163 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1556,546,002 - 56,604,709 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01557,664,321 - 57,723,032 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01554,483,694 - 54,546,162 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01559,159,822 - 59,280,538 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1559,216,705 - 59,279,967 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01562,899,640 - 62,962,931 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41558,510,558 - 58,538,200 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1551,958,326 - 52,081,955 (+)NCBICelera
Cytogenetic Map15q11NCBI
Ccdc122
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555181,746,744 - 1,784,928 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555181,746,832 - 1,776,266 (-)NCBIChiLan1.0ChiLan1.0
CCDC122
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21443,339,961 - 43,384,822 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11334,423,305 - 34,468,675 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01325,005,797 - 25,049,506 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13199,012,301 - 199,055,911 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3199,012,301 - 199,055,911 (+)Ensemblpanpan1.1panPan2
CCDC122
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1227,004,022 - 7,047,249 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl227,003,850 - 7,046,952 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha226,996,001 - 7,039,737 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0227,208,481 - 7,251,940 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl227,209,163 - 7,251,648 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1226,907,632 - 6,951,374 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0226,969,502 - 7,013,240 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0226,976,354 - 7,019,785 (+)NCBIUU_Cfam_GSD_1.0
LOC101963096
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945153,928,471 - 153,967,544 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936747106,703 - 145,491 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC122
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1123,159,470 - 23,198,885 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11123,159,655 - 23,199,074 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21123,612,052 - 23,665,884 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC122
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1321,955,067 - 21,996,013 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl321,955,153 - 21,985,595 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605722,157,841 - 22,229,625 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc122
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474811,208,754 - 11,242,336 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474811,194,873 - 11,242,700 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ccdc122
2320 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1030
Count of miRNA genes:369
Interacting mature miRNAs:418
Transcripts:ENSMUST00000048208, ENSMUST00000095625, ENSMUST00000137110, ENSMUST00000175810
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
11039527Ccc2_mcolitis susceptibility in the Collaborative Cross 2 (mouse)145991861294138217Mouse
1300666Fembm2_mfemoral bone morphometry 2 (mouse)Not determined146239746096397680Mouse
14747006Mancz12_mmandible centroid size 12 (mouse)1470071977104071977Mouse
10054475Ossc3_mosteosarcoma susceptibility 3 (mouse)Not determined1470863768104863926Mouse
1300551Lprm3_mlymphoproliferation modifier 3 (mouse)Not determined1471221224105221344Mouse
1301844Pgia29_mproteoglycan induced arthritis 29 (mouse)Not determined1474352296108352384Mouse
1558819Ossc2_mosteosarcoma susceptibility 2 (mouse)Not determined1474394976108395093Mouse
14928314Manh77_mmandible shape 77 (mouse)1476767790110767790Mouse
1558823Tbbmd6_mtotal body bone mineral density 6 (mouse)Not determined1477073696111073787Mouse

Markers in Region
34.MMHAP97FRD10.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381477,036,244 - 77,036,403UniSTSGRCm38
MGSCv371477,436,051 - 77,436,210UniSTSGRCm37
Celera1474,544,936 - 74,545,095UniSTS
Cytogenetic Map14D3UniSTS
Whitehead_YAC14 UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000048208   ⟹   ENSMUSP00000036369
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1477,274,212 - 77,349,644 (+)Ensembl
GRCm38.p6 Ensembl1477,036,772 - 77,112,204 (+)Ensembl
RefSeq Acc Id: ENSMUST00000095625   ⟹   ENSMUSP00000093285
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1477,274,222 - 77,349,644 (+)Ensembl
GRCm38.p6 Ensembl1477,036,782 - 77,112,204 (+)Ensembl
RefSeq Acc Id: ENSMUST00000137110
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1477,348,415 - 77,349,697 (+)Ensembl
GRCm38.p6 Ensembl1477,110,975 - 77,112,257 (+)Ensembl
RefSeq Acc Id: ENSMUST00000175810   ⟹   ENSMUSP00000135167
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1477,274,304 - 77,349,135 (+)Ensembl
GRCm38.p6 Ensembl1477,036,864 - 77,111,695 (+)Ensembl
RefSeq Acc Id: NM_001310648   ⟹   NP_001297577
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391477,274,212 - 77,349,703 (+)NCBI
GRCm381477,036,772 - 77,112,263 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001310649   ⟹   NP_001297578
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391477,274,212 - 77,349,703 (+)NCBI
GRCm381477,036,772 - 77,112,263 (+)NCBI
Sequence:
RefSeq Acc Id: NM_175369   ⟹   NP_780578
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391477,274,212 - 77,349,703 (+)NCBI
GRCm381477,036,772 - 77,112,263 (+)NCBI
MGSCv371477,436,579 - 77,512,011 (+)RGD
Celera1474,545,464 - 74,614,373 (+)RGD
cM Map14 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_780578   ⟸   NM_175369
- Peptide Label: isoform 1
- UniProtKB: B2RSJ0 (UniProtKB/Swiss-Prot),   Q8BVN0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001297577   ⟸   NM_001310648
- Peptide Label: isoform 2
- UniProtKB: Q8BVN0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001297578   ⟸   NM_001310649
- Peptide Label: isoform 3
- UniProtKB: Q4VA24 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000036369   ⟸   ENSMUST00000048208
RefSeq Acc Id: ENSMUSP00000093285   ⟸   ENSMUST00000095625
RefSeq Acc Id: ENSMUSP00000135167   ⟸   ENSMUST00000175810

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BVN0-F1-model_v2 AlphaFold Q8BVN0 1-290 view protein structure

Promoters
RGD ID:8683038
Promoter ID:EPDNEW_M19550
Type:multiple initiation site
Name:Ccdc122_1
Description:Mus musculus coiled-coil domain containing 122 , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381477,036,752 - 77,036,812EPDNEW
RGD ID:6824754
Promoter ID:MM_KWN:17514
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Liver,   Lung
Transcripts:ENSMUST00000095625,   NM_175369
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361477,436,416 - 77,436,916 (+)MPROMDB
RGD ID:6824755
Promoter ID:MM_KWN:17515
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000068799
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361477,510,421 - 77,510,921 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1918358 AgrOrtholog
Ensembl Genes ENSMUSG00000034795 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000048208 ENTREZGENE
  ENSMUST00000048208.10 UniProtKB/Swiss-Prot
  ENSMUST00000095625 ENTREZGENE
  ENSMUST00000095625.11 UniProtKB/TrEMBL
  ENSMUST00000175810.2 UniProtKB/TrEMBL
KEGG Report mmu:108811 UniProtKB/Swiss-Prot
MGD MGI:1918358 ENTREZGENE
NCBI Gene 108811 ENTREZGENE
PhenoGen Ccdc122 PhenoGen
UniProt B2RSJ0 ENTREZGENE
  CC122_MOUSE UniProtKB/Swiss-Prot
  H3BJX7_MOUSE UniProtKB/TrEMBL
  Q4VA24 ENTREZGENE, UniProtKB/TrEMBL
  Q8BVN0 ENTREZGENE
UniProt Secondary B2RSJ0 UniProtKB/Swiss-Prot