Vmn1r208 (vomeronasal 1 receptor 208) - Rat Genome Database

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Pathways
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Gene: Vmn1r208 (vomeronasal 1 receptor 208) Mus musculus
Analyze
No known orthologs.
Symbol: Vmn1r208
Name: vomeronasal 1 receptor 208
RGD ID: 1616617
MGI Page MGI
Description: Predicted to enable pheromone binding activity and pheromone receptor activity. Predicted to act upstream of or within response to pheromone. Predicted to be located in plasma membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: V1r; V1rh9; Vmn1r2; Vmn1r208-ps; vomernasal 1 receptor Vmn1r208; vomeronasal 1 receptor 208, pseudogene; vomeronasal 1 receptor, H9
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Pseudogenes: Vmn1r-ps111  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391322,956,569 - 22,957,495 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1322,955,644 - 22,961,570 (-)EnsemblGRCm39 Ensembl
GRCm381322,772,399 - 22,773,325 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1322,771,474 - 22,777,400 (-)EnsemblGRCm38mm10GRCm38
MGSCv371322,864,268 - 22,865,194 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361322,779,864 - 22,780,790 (-)NCBIMGSCv36mm8
Celera1323,011,687 - 23,030,764 (-)NCBICelera
Cytogenetic Map13A3.1NCBI
cM Map139.15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
folic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:11802169   PMID:19952141   PMID:21873635  


Genomics

Variants

.
Variants in Vmn1r208
7 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:68
Count of miRNA genes:68
Interacting mature miRNAs:68
Transcripts:ENSMUST00000124841
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301890Adip7_madiposity 7 (mouse)Not determined13123454672Mouse
1301227Skull19_mskull morphology 19 (mouse)Not determined13123454672Mouse
1301661Tshp13_mtooth shape 13 (mouse)Not determined13123454672Mouse
1301255Cd4ts6_mCD4 T cell subset 6 (mouse)Not determined1316854534168684Mouse
10449140Eosn2_meosinophil differential 2 (mouse)1322131134221311Mouse
15039338Nmrs34_mNAFLD-associated magnetic resonance shift 34 (mouse)1322131134221311Mouse
1301455Bmd3_mbone mineral density 3 (mouse)Not determined13347761237477820Mouse
10045624Heal24_mwound healing/regeneration (mouse)Not determined13347761237477820Mouse
10045625Heal23_mwound healing/regeneration 23 (mouse)Not determined13347761237477820Mouse
1301367Twq1_mtestis weight QTL 1 (mouse)Not determined13361551237615672Mouse
1301733Heal3_mwound healing/regeneration 3 (mouse)Not determined13368020037680343Mouse
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
1558898Hpi1_mhapatic PMN infiltration 1 (mouse)Not determined13441402553101640Mouse
10402494Igmsc1_mimmunoglobulin M secreting cells 1 (mouse)Not determined131716854544918560Mouse
1301984Pbd2_mpeak bone density 2 (mouse)Not determined131718950838947406Mouse
1301880Hypt_mhypertension (mouse)Not determined131815679252156924Mouse
13463469Gssq1_mglomerulosclerosis severity QTL 1 (mouse)131906090853061050Mouse
12880423V25Dq7_mvitamin D inactive form serum level QTL 7 (mouse)131958398353583983Mouse
1301015Sysbp2_msystolic blood pressure 2 (mouse)Not determined132047761259821605Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
1357591Tesq1_mtestis weight QTL 1 (mouse)Not determined132061551255720517Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132061551272385189Mouse
10045618Heal17_mwound healing/regeneration 17 (mouse)Not determined132074693954747056Mouse

Markers in Region
UniSTS:490621  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381322,772,399 - 22,773,325UniSTSGRCm38
GRCm381322,691,042 - 22,691,966UniSTSGRCm38
MGSCv371322,782,911 - 22,783,835UniSTSGRCm37
MGSCv371322,864,268 - 22,865,194UniSTSGRCm37
Cytogenetic Map13A2-A3.1UniSTS
Cytogenetic Map13A3.1UniSTS
UniSTS:495569  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381322,772,333 - 22,773,418UniSTSGRCm38
GRCm381322,690,976 - 22,692,059UniSTSGRCm38
MGSCv371322,782,845 - 22,783,928UniSTSGRCm37
MGSCv371322,864,202 - 22,865,287UniSTSGRCm37
Cytogenetic Map13A2-A3.1UniSTS
Cytogenetic Map13A3.1UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000124841   ⟹   ENSMUSP00000128942
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1322,956,569 - 22,957,495 (-)Ensembl
GRCm38.p6 Ensembl1322,772,399 - 22,773,325 (-)Ensembl
RefSeq Acc Id: ENSMUST00000227136   ⟹   ENSMUSP00000153904
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1322,955,644 - 22,961,570 (-)Ensembl
GRCm38.p6 Ensembl1322,771,474 - 22,777,400 (-)Ensembl
RefSeq Acc Id: NM_134218   ⟹   NP_598979
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391322,956,569 - 22,957,495 (-)NCBI
GRCm381322,772,399 - 22,773,325 (-)NCBI
MGSCv371322,864,268 - 22,865,194 (-)RGD
Celera1323,011,687 - 23,030,764 (-)NCBI
cM Map13 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_598979 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAL47940 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000128942
  ENSMUSP00000128942.2
  ENSMUSP00000153904.2
Reference Protein Sequences
RefSeq Acc Id: NP_598979   ⟸   NM_134218
- UniProtKB: Q8R275 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000128942   ⟸   ENSMUST00000124841
RefSeq Acc Id: ENSMUSP00000153904   ⟸   ENSMUST00000227136
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R275-F1-model_v2 AlphaFold Q8R275 1-308 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2159668 AgrOrtholog
Ensembl Genes ENSMUSG00000071493 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000124841 ENTREZGENE
  ENSMUST00000124841.3 UniProtKB/TrEMBL
  ENSMUST00000227136.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Vmron_rcpt_1 UniProtKB/TrEMBL
KEGG Report mmu:171252 UniProtKB/TrEMBL
MGD MGI:2159668 ENTREZGENE
NCBI Gene 171252 ENTREZGENE
PANTHER PTHR24062 UniProtKB/TrEMBL
  VOMERONASAL TYPE-1 RECEPTOR UniProtKB/TrEMBL
Pfam V1R UniProtKB/TrEMBL
PhenoGen Vmn1r208 PhenoGen
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt Q8R275 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Vmn1r208  vomeronasal 1 receptor 208  V1rh9  vomeronasal 1 receptor, H9  Symbol and/or name change 5135510 APPROVED