Vmn1r66 (vomeronasal 1 receptor 66) - Rat Genome Database

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Gene: Vmn1r66 (vomeronasal 1 receptor 66) Mus musculus
Analyze
Symbol: Vmn1r66
Name: vomeronasal 1 receptor 66
RGD ID: 1616609
MGI Page MGI
Description: Predicted to enable pheromone binding activity and pheromone receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and response to pheromone. Predicted to be located in plasma membrane. Orthologous to several human genes including VN1R2 (vomeronasal 1 receptor 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC130229; MGC130230; S67; V1re; V1re11; V1re3; vomernasal 1 receptor Vmn1r66; vomeronasal 1 receptor, E11; vomeronasal receptor 1 E3; vomeronasal type 1 receptor E11
RGD Orthologs
Human
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39710,007,755 - 10,009,278 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl710,006,918 - 10,011,933 (-)EnsemblGRCm39 Ensembl
GRCm38710,273,828 - 10,275,351 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl710,272,991 - 10,278,006 (-)EnsemblGRCm38mm10GRCm38
MGSCv37710,859,177 - 10,860,700 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3679,148,721 - 9,150,244 (-)NCBIMGSCv36mm8
Celera77,732,819 - 7,734,342 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map76.34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11802169   PMID:12477932   PMID:19952141   PMID:20003482   PMID:21267068   PMID:21873635  


Genomics

Comparative Map Data
Vmn1r66
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39710,007,755 - 10,009,278 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl710,006,918 - 10,011,933 (-)EnsemblGRCm39 Ensembl
GRCm38710,273,828 - 10,275,351 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl710,272,991 - 10,278,006 (-)EnsemblGRCm38mm10GRCm38
MGSCv37710,859,177 - 10,860,700 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3679,148,721 - 9,150,244 (-)NCBIMGSCv36mm8
Celera77,732,819 - 7,734,342 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map76.34NCBI
ZNF333
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381914,689,787 - 14,733,742 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1914,689,801 - 14,733,746 (+)EnsemblGRCh38hg38GRCh38
GRCh371914,800,860 - 14,844,554 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361914,661,870 - 14,692,772 (+)NCBINCBI36Build 36hg18NCBI36
Build 341914,661,869 - 14,692,772NCBI
Celera1914,694,891 - 14,725,784 (+)NCBICelera
Cytogenetic Map19p13.12NCBI
HuRef1914,367,302 - 14,398,179 (+)NCBIHuRef
CHM1_11914,800,389 - 14,831,266 (+)NCBICHM1_1
T2T-CHM13v2.01914,816,091 - 14,860,049 (+)NCBIT2T-CHM13v2.0
Znf333
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541531,661,089 - 31,686,000 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541531,663,213 - 31,687,372 (-)NCBIChiLan1.0ChiLan1.0
ZNF333
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22019,604,212 - 19,634,802 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11918,621,158 - 18,650,501 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01914,237,791 - 14,268,376 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11915,098,084 - 15,127,985 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1915,101,366 - 15,143,096 (+)Ensemblpanpan1.1panPan2
ZNF333
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12047,981,662 - 48,003,802 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2047,982,076 - 47,995,620 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2047,856,662 - 47,879,110 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02048,495,230 - 48,517,509 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2048,493,003 - 48,517,706 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12047,711,178 - 47,733,680 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02048,135,340 - 48,157,626 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02048,380,171 - 48,402,448 (-)NCBIUU_Cfam_GSD_1.0
Znf333
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118207,177,873 - 207,196,488 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366593,158,389 - 3,177,784 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF333
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl264,585,109 - 64,607,783 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1264,585,113 - 64,607,818 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2264,741,947 - 64,761,907 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF333
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1613,348,193 - 13,381,843 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl613,355,192 - 13,376,980 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660746,217,529 - 6,250,801 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Vmn1r66
65 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:76
Interacting mature miRNAs:79
Transcripts:ENSMUST00000060374
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse

Markers in Region
UniSTS:487653  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38710,273,928 - 10,275,204UniSTSGRCm38
MGSCv37710,859,277 - 10,860,553UniSTSGRCm37
Celera77,732,966 - 7,734,242UniSTS
Cytogenetic Map7A1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_134230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF394952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY065510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC109341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC109342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000060374   ⟹   ENSMUSP00000055861
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl710,007,755 - 10,009,278 (-)Ensembl
GRCm38.p6 Ensembl710,273,828 - 10,275,351 (-)Ensembl
RefSeq Acc Id: ENSMUST00000226202
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl710,006,918 - 10,011,933 (-)Ensembl
GRCm38.p6 Ensembl710,272,991 - 10,278,006 (-)Ensembl
RefSeq Acc Id: ENSMUST00000227719   ⟹   ENSMUSP00000154063
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl710,006,918 - 10,011,933 (-)Ensembl
GRCm38.p6 Ensembl710,272,991 - 10,278,006 (-)Ensembl
RefSeq Acc Id: ENSMUST00000228086   ⟹   ENSMUSP00000153825
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl710,006,918 - 10,011,933 (-)Ensembl
GRCm38.p6 Ensembl710,272,991 - 10,278,006 (-)Ensembl
RefSeq Acc Id: ENSMUST00000228622   ⟹   ENSMUSP00000153860
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl710,006,918 - 10,011,933 (-)Ensembl
GRCm38.p6 Ensembl710,272,991 - 10,278,006 (-)Ensembl
RefSeq Acc Id: NM_134230   ⟹   NP_598991
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39710,007,755 - 10,009,278 (-)NCBI
GRCm38710,273,828 - 10,275,351 (-)ENTREZGENE
MGSCv37710,859,177 - 10,860,700 (-)RGD
Celera77,732,819 - 7,734,342 (+)RGD
cM Map7 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_598991 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI09342 (Get FASTA)   NCBI Sequence Viewer  
  AAI09343 (Get FASTA)   NCBI Sequence Viewer  
  AAL47915 (Get FASTA)   NCBI Sequence Viewer  
  AAM69672 (Get FASTA)   NCBI Sequence Viewer  
  AEF00349 (Get FASTA)   NCBI Sequence Viewer  
  AEF00350 (Get FASTA)   NCBI Sequence Viewer  
  AEF00351 (Get FASTA)   NCBI Sequence Viewer  
  AEF00352 (Get FASTA)   NCBI Sequence Viewer  
  AEF00353 (Get FASTA)   NCBI Sequence Viewer  
  AEF00354 (Get FASTA)   NCBI Sequence Viewer  
  AEF00355 (Get FASTA)   NCBI Sequence Viewer  
  AEF00356 (Get FASTA)   NCBI Sequence Viewer  
  AEF00357 (Get FASTA)   NCBI Sequence Viewer  
  AEF00358 (Get FASTA)   NCBI Sequence Viewer  
  AEF00359 (Get FASTA)   NCBI Sequence Viewer  
  AEF00360 (Get FASTA)   NCBI Sequence Viewer  
  AEF00361 (Get FASTA)   NCBI Sequence Viewer  
  AEF00362 (Get FASTA)   NCBI Sequence Viewer  
  AEF00363 (Get FASTA)   NCBI Sequence Viewer  
  AEF00364 (Get FASTA)   NCBI Sequence Viewer  
  AEF00365 (Get FASTA)   NCBI Sequence Viewer  
  AEF00366 (Get FASTA)   NCBI Sequence Viewer  
  AEF00367 (Get FASTA)   NCBI Sequence Viewer  
  AEF00368 (Get FASTA)   NCBI Sequence Viewer  
  AEF00369 (Get FASTA)   NCBI Sequence Viewer  
  AEF00370 (Get FASTA)   NCBI Sequence Viewer  
  AEF00371 (Get FASTA)   NCBI Sequence Viewer  
  AEF00372 (Get FASTA)   NCBI Sequence Viewer  
  AEF00373 (Get FASTA)   NCBI Sequence Viewer  
  AEF00374 (Get FASTA)   NCBI Sequence Viewer  
  AEF00375 (Get FASTA)   NCBI Sequence Viewer  
  AEF00376 (Get FASTA)   NCBI Sequence Viewer  
  EDL03626 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000055861
  ENSMUSP00000055861.5
  ENSMUSP00000153825.2
  ENSMUSP00000153860.2
  ENSMUSP00000154063.2
RefSeq Acc Id: NP_598991   ⟸   NM_134230
- UniProtKB: Q8K4I0 (UniProtKB/TrEMBL),   F6MBP3 (UniProtKB/TrEMBL),   F6MBP9 (UniProtKB/TrEMBL),   F6MBR9 (UniProtKB/TrEMBL),   Q8R2A0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000153825   ⟸   ENSMUST00000228086
RefSeq Acc Id: ENSMUSP00000154063   ⟸   ENSMUST00000227719
RefSeq Acc Id: ENSMUSP00000055861   ⟸   ENSMUST00000060374
RefSeq Acc Id: ENSMUSP00000153860   ⟸   ENSMUST00000228622
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K4I0-F1-model_v2 AlphaFold Q8K4I0 1-310 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2159633 AgrOrtholog
Ensembl Genes ENSMUSG00000043066 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000060374 ENTREZGENE
  ENSMUST00000060374.5 UniProtKB/TrEMBL
  ENSMUST00000227719.2 UniProtKB/TrEMBL
  ENSMUST00000228086.2 UniProtKB/TrEMBL
  ENSMUST00000228622.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Vmron_rcpt_1 UniProtKB/TrEMBL
KEGG Report mmu:171264 UniProtKB/TrEMBL
MGD MGI:2159633 ENTREZGENE
NCBI Gene 171264 ENTREZGENE
PANTHER PTHR24062 UniProtKB/TrEMBL
  VOMERONASAL TYPE-1 RECEPTOR UniProtKB/TrEMBL
Pfam V1R UniProtKB/TrEMBL
PhenoGen Vmn1r66 PhenoGen
PRINTS VOMERONASL1R UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt F6MBP3 ENTREZGENE
  F6MBP9 ENTREZGENE
  F6MBR9 ENTREZGENE
  Q32M16_MOUSE UniProtKB/TrEMBL
  Q8K4I0 ENTREZGENE, UniProtKB/TrEMBL
  Q8R2A0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Vmn1r66  vomeronasal 1 receptor 66  V1re11  vomeronasal 1 receptor, E11  Symbol and/or name change 5135510 APPROVED