Gm4938 (predicted pseudogene 4938) - Rat Genome Database

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Gene: Gm4938 (predicted pseudogene 4938) Mus musculus
Analyze
Symbol: Gm4938
Name: predicted pseudogene 4938
RGD ID: 1616529
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG238836; H3mm14
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913105,055,181 - 105,056,055 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13105,055,288 - 105,055,684 (+)EnsemblGRCm39 Ensembl
GRCm3813104,918,673 - 104,919,547 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13104,918,780 - 104,919,176 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713105,708,753 - 105,709,627 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613106,039,161 - 106,039,932 (+)NCBIMGSCv36mm8
Celera13109,312,967 - 109,313,841 (+)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1356.89NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14610273   PMID:26388943  


Genomics

Variants

.
Variants in Gm4938
42 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:62
Count of miRNA genes:59
Interacting mature miRNAs:62
Transcripts:ENSMUST00000171334
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
4141266Mol3_mmodifier of LPS-response 3 (mouse)Not determined76132600112431103Mouse
12880414V125Dq10_mvitamin D active form serum level QTL 10 (mouse)1378036508112036508Mouse
10043997Bw40_mbody weight QTL 40 (mouse)Not determined1479239045113239162Mouse
10045623Heal18_mwound healing regeneration 18 (mouse)Not determined1379239045113239162Mouse
1558741Ses10_msalmonella enteritidis susceptibility 10 (mouse)Not determined1382739968116740106Mouse
4142465Pbwg17_mpostnatal body weight growth 17 (mouse)Not determined1383876060117876256Mouse
14700691Cisaq1_mcoxsackieviral infection serum ALT QTL 1 (mouse)1386148119120461536Mouse
4140995Fbtq6_mfemoral bone trait QTL 6 (mouse)Not determined1386341617120341758Mouse
4141728Egaq4_mearly growth adjusted QTL 4 (mouse)Not determined87901985112431103Mouse
1300939Hrtfm6_mheart failure modifier 6 (mouse)Not determined1391383692120883175Mouse
1300876Tanidd2_mtally ho associated non-insulin dependednt diabetes mellitus 2 (mouse)Not determined1391965303120883175Mouse
1301142Heal2_mwound healing/regeneration 2 (mouse)Not determined1393875267120883175Mouse
4142338Skmw18_mskeletal muscle weight 18 (mouse)Not determined1394528399120883175Mouse
1558763Gct9_mgranulosa cell tumorigenesis 9 (mouse)Not determined1395036824120883175Mouse
1357468Rplag_mreduced platelet aggregation (mouse)Not determined1395502130120883175Mouse
14746974Manh75_mmandible shape 75 (mouse)1399386647120883175Mouse
4141102Sod1m_msuperoxide dismutase 1, soluble, modifier (mouse)Not determined99739968110699911Mouse
12879496Fexq2_mfear expression QTL 2 (mouse)13100741519120883175Mouse
13824989Pbsq1_mpercent broken sperm QTL 1 (mouse)13102136508112136534Mouse
4142400Tgq24_mtriglyceride QTL 24 (mouse)Not determined102602630120883175Mouse
25394543Skmw79_mskeletal muscle weight 79, soleus (mouse)13103286625107663775Mouse
4141826Tbqt5_mtibia bone quality traits 5 (mouse)Not determined13103341617117043216Mouse
25394542Skmw80_mskeletal muscle weight 80, TA (mouse)13104397730107663775Mouse
25394544Skmw78_mskeletal muscle weight 78, gastroc (mouse)13104397730107663775Mouse
25394545Skmw77_mskeletal muscle weight 77, EDL (mouse)13104421423107663775Mouse
13513920Heal57_mwound healing/ regeneration 57 (mouse)13104450757107073998Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000171334
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13105,055,288 - 105,055,684 (+)Ensembl
GRCm38.p6 Ensembl13104,918,780 - 104,919,176 (+)Ensembl
Protein Sequences
GenBank Protein EDL18486 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000114326 Ensembl
MGD MGI:3645099 ENTREZGENE
NCBI Gene 238836 ENTREZGENE
PhenoGen Gm4938 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Gm4938  predicted pseudogene 4938  Gm4938  predicted gene 4938  Symbol and/or name change 5135510 APPROVED