Gm4986 (predicted pseudogene 4986) - Rat Genome Database

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Gene: Gm4986 (predicted pseudogene 4986) Mus musculus
Analyze
Symbol: Gm4986
Name: predicted pseudogene 4986
RGD ID: 1616506
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG245391
Related Functional Gene: Rpl17  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X39,225,852 - 39,226,467 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX39,225,885 - 39,226,433 (-)EnsemblGRCm39 Ensembl
GRCm38X40,136,975 - 40,137,590 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX40,137,008 - 40,137,556 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X37,490,152 - 37,490,767 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X36,381,601 - 36,386,760 (-)NCBIMGSCv36mm8
CeleraX27,750,028 - 27,750,643 (-)NCBICelera
Cytogenetic MapXA3.3NCBI
cM MapX23.19NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm4986
20 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:42
Count of miRNA genes:40
Interacting mature miRNAs:41
Transcripts:ENSMUST00000119731
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
1301551Spha1_msperm head anomaly 1 (mouse)Not determinedX1026622539921652Mouse
13208553Wght11_mweight 11 (mouse)X1186623959045360Mouse
13208557Lgth13_mbody length 13 (mouse)X1186623959045360Mouse
1558721Bw1_mbody weight QTL 1 (mouse)Not determinedX2060678347179225Mouse
12738418Lfibq12_mliver fibrosis QTL 12 (mouse)X2572817443635700Mouse
27226750Femd9_mfemur midshaft diameter 9, 10 week (mouse)X3333746355845360Mouse
27226780Femd12_mfemur midshaft diameter 12, 16 week (mouse)X3466365356845360Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse
1301009Pbwg7_mpostnatal body weight growth 7 (mouse)Not determinedX3911371473113814Mouse
4141565Pbwg21_mpostnatal body weight growth 21 (mouse)Not determinedX3911371473113814Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_017838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL928730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000119731
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX39,225,885 - 39,226,433 (-)Ensembl
GRCm38.p6 EnsemblX40,137,008 - 40,137,556 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000080996 Ensembl, ENTREZGENE
MGD MGI:3647545 ENTREZGENE
NCBI Gene 245391 ENTREZGENE
PhenoGen Gm4986 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Gm4986  predicted pseudogene 4986  Gm4986  predicted gene 4986  Symbol and/or name change 5135510 APPROVED