Pom121l12 (POM121 membrane glycoprotein-like 12) - Rat Genome Database

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Gene: Pom121l12 (POM121 membrane glycoprotein-like 12) Mus musculus
Analyze
Symbol: Pom121l12
Name: POM121 membrane glycoprotein-like 12
RGD ID: 1616368
MGI Page MGI
Description: Orthologous to human POM121L12 (POM121 transmembrane nucleoporin like 12).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700054H16Rik; nuclear pore membrane glycoprotein 121-like; POM121-like protein 12
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391114,549,240 - 14,550,316 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1114,549,276 - 14,550,314 (+)EnsemblGRCm39 Ensembl
GRCm381114,599,240 - 14,600,316 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1114,599,276 - 14,600,314 (+)EnsemblGRCm38mm10GRCm38
MGSCv371114,499,243 - 14,500,319 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361114,499,279 - 14,500,317 (+)NCBIMGSCv36mm8
Celera1115,013,016 - 15,014,092 (+)NCBICelera
Cytogenetic Map11A2NCBI
cM Map118.34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21873635  


Genomics

Comparative Map Data
Pom121l12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391114,549,240 - 14,550,316 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1114,549,276 - 14,550,314 (+)EnsemblGRCm39 Ensembl
GRCm381114,599,240 - 14,600,316 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1114,599,276 - 14,600,314 (+)EnsemblGRCm38mm10GRCm38
MGSCv371114,499,243 - 14,500,319 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361114,499,279 - 14,500,317 (+)NCBIMGSCv36mm8
Celera1115,013,016 - 15,014,092 (+)NCBICelera
Cytogenetic Map11A2NCBI
cM Map118.34NCBI
POM121L12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38753,035,633 - 53,036,925 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl753,035,633 - 53,036,925 (+)EnsemblGRCh38hg38GRCh38
GRCh37753,103,326 - 53,104,618 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36753,070,843 - 53,072,112 (+)NCBINCBI36Build 36hg18NCBI36
Celera753,164,061 - 53,165,330 (+)NCBICelera
Cytogenetic Map7p12.1NCBI
HuRef752,952,753 - 52,954,022 (+)NCBIHuRef
CHM1_1753,105,721 - 53,106,990 (+)NCBICHM1_1
T2T-CHM13v2.0753,197,495 - 53,198,787 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2753,108,769 - 53,110,038 (+)NCBI
Pom121l12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81493,321,942 - 93,323,011 (+)NCBIGRCr8
mRatBN7.21489,108,535 - 89,109,604 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1489,108,572 - 89,109,408 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1493,480,783 - 93,481,852 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01494,725,078 - 94,726,147 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01491,192,682 - 91,193,751 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01497,686,088 - 97,687,756 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1497,686,121 - 97,686,936 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01497,484,719 - 97,486,005 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41495,472,285 - 95,473,317 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1488,229,988 - 88,231,656 (+)NCBICelera
Cytogenetic Map14q21NCBI
Pom121l12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554658,249,402 - 8,251,149 (+)NCBIChiLan1.0ChiLan1.0
POM121L12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2657,904,873 - 57,913,199 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17106,229,599 - 106,237,925 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0753,672,854 - 53,674,134 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1753,985,013 - 53,986,302 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl753,985,049 - 53,985,939 (+)Ensemblpanpan1.1panPan2
POM121L12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1215,813,195 - 5,816,527 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606216,664,676 - 16,668,008 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Pom121l12
55 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:197
Count of miRNA genes:180
Interacting mature miRNAs:190
Transcripts:ENSMUST00000117584, ENSMUST00000165452
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10053676Eae44a_mexperimental allergic encephalomyelitis susceptibility 44a (mouse)Not determined11450789621379532Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226794Feml9_mfemur length 9, 5 week (mouse)11705000016750000Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000117584   ⟹   ENSMUSP00000147960
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1114,549,276 - 14,550,314 (+)Ensembl
GRCm38.p6 Ensembl1114,599,276 - 14,600,314 (+)Ensembl
RefSeq Acc Id: NM_001164166   ⟹   NP_001157638
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391114,549,240 - 14,550,316 (+)NCBI
GRCm381114,599,240 - 14,600,316 (+)ENTREZGENE
MGSCv371114,499,243 - 14,500,319 (+)RGD
Celera1115,013,016 - 15,014,092 (+)RGD
cM Map11 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001157638 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000147960
  ENSMUSP00000147960.2
RefSeq Acc Id: NP_001157638   ⟸   NM_001164166
- UniProtKB: A0A1B0GSJ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000147960   ⟸   ENSMUST00000117584

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A1B0GSJ4-F1-model_v2 AlphaFold A0A1B0GSJ4 1-278 view protein structure

Promoters
RGD ID:8674010
Promoter ID:EPDNEW_M15031
Type:initiation region
Name:Pom121l12_1
Description:Mus musculus POM121 membrane glycoprotein-like 12 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381114,599,273 - 14,599,333EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1920677 AgrOrtholog
Ensembl Genes ENSMUSG00000084135 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000117584 ENTREZGENE
  ENSMUST00000117584.3 UniProtKB/TrEMBL
KEGG Report mmu:432536 UniProtKB/TrEMBL
MGD MGI:1920677 ENTREZGENE
NCBI Gene 432536 ENTREZGENE
Pfam POM121 UniProtKB/TrEMBL
PhenoGen Pom121l12 PhenoGen
UniProt A0A1B0GSJ4 ENTREZGENE, UniProtKB/TrEMBL