Specc1 (sperm antigen with calponin homology and coiled-coil domains 1) - Rat Genome Database

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Gene: Specc1 (sperm antigen with calponin homology and coiled-coil domains 1) Mus musculus
Analyze
Symbol: Specc1
Name: sperm antigen with calponin homology and coiled-coil domains 1
RGD ID: 1616365
MGI Page MGI
Description: Acts upstream of or within associative learning and blastocyst development. Located in apical part of cell; cytoplasm; and nucleus. Is expressed in aorta; liver; molar; and ventricular layer. Orthologous to human SPECC1 (sperm antigen with calponin homology and coiled-coil domains 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810012G08Rik; B230396K10Rik; cytospin B; cytospin-B; Cyts; Cytsb; KIAA4061; mKIAA4061; RP23-102H10.1; spectrin domain with coiled-coils 1; sperm antigen HCMOGT-1-like
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391161,847,589 - 62,113,839 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1161,847,589 - 62,113,839 (+)EnsemblGRCm39 Ensembl
GRCm381161,956,763 - 62,223,013 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,956,763 - 62,223,013 (+)EnsemblGRCm38mm10GRCm38
MGSCv371161,890,599 - 62,036,515 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361161,893,292 - 62,039,208 (+)NCBIMGSCv36mm8
Celera1169,004,409 - 69,147,561 (+)NCBICelera
Cytogenetic Map11B2NCBI
cM Map1137.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17114649   PMID:18799693  
PMID:21267068   PMID:21873635   PMID:22846151   PMID:22922362   PMID:23299920   PMID:29254152   PMID:29518331   PMID:30196744   PMID:32098917   PMID:32554809   PMID:32581705   PMID:33230847  
PMID:34166821   PMID:34321999   PMID:36384115  


Genomics

Comparative Map Data
Specc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391161,847,589 - 62,113,839 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1161,847,589 - 62,113,839 (+)EnsemblGRCm39 Ensembl
GRCm381161,956,763 - 62,223,013 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,956,763 - 62,223,013 (+)EnsemblGRCm38mm10GRCm38
MGSCv371161,890,599 - 62,036,515 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361161,893,292 - 62,039,208 (+)NCBIMGSCv36mm8
Celera1169,004,409 - 69,147,561 (+)NCBICelera
Cytogenetic Map11B2NCBI
cM Map1137.96NCBI
SPECC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381720,009,359 - 20,319,026 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1720,008,865 - 20,319,026 (+)EnsemblGRCh38hg38GRCh38
GRCh371719,912,672 - 20,222,339 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361719,930,927 - 20,158,660 (+)NCBINCBI36Build 36hg18NCBI36
Celera1717,404,264 - 17,631,972 (+)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1719,291,394 - 19,596,822 (+)NCBIHuRef
CHM1_11719,921,409 - 20,226,847 (+)NCBICHM1_1
T2T-CHM13v2.01719,958,073 - 20,267,692 (+)NCBIT2T-CHM13v2.0
Specc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81047,138,351 - 47,412,311 (+)NCBIGRCr8
mRatBN7.21046,638,947 - 46,912,989 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1046,638,809 - 46,912,802 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1051,341,923 - 51,532,654 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01050,832,455 - 51,023,191 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01046,335,869 - 46,526,600 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01048,240,291 - 48,542,171 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1048,240,127 - 48,542,292 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01048,031,413 - 48,330,676 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41048,118,178 - 48,309,501 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11048,234,661 - 48,322,851 (+)NCBI
Celera1045,885,420 - 46,075,919 (+)NCBICelera
Cytogenetic Map10q22-q23NCBI
SPECC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21955,009,280 - 55,322,630 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11759,821,096 - 60,134,390 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01730,800,973 - 31,114,322 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11735,955,207 - 36,253,178 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1735,951,060 - 36,253,178 (-)Ensemblpanpan1.1panPan2
SPECC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1539,936,851 - 40,163,249 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl539,940,165 - 40,137,627 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha540,082,543 - 40,309,634 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0540,046,544 - 40,273,530 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl540,029,538 - 40,327,157 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1540,018,605 - 40,245,168 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0539,963,873 - 40,190,657 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0540,155,296 - 40,383,379 (-)NCBIUU_Cfam_GSD_1.0
Specc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560258,897,988 - 59,170,337 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936821641,852 - 914,208 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936821641,863 - 914,188 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPECC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1259,466,791 - 59,654,192 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11259,466,778 - 59,705,602 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SPECC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11618,585,965 - 18,896,161 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1618,737,158 - 18,893,994 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660591,939,033 - 2,250,111 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Specc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248774,499,581 - 4,886,580 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Specc1
8702 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3894
Count of miRNA genes:897
Interacting mature miRNAs:1194
Transcripts:ENSMUST00000049836, ENSMUST00000092415, ENSMUST00000108709, ENSMUST00000136971
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5406567063319522Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115406567067078411Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115408094165103841Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115925661769482699Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse

Markers in Region
D11Mit261  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381162,151,201 - 62,151,308UniSTSGRCm38
MGSCv371161,964,703 - 61,964,810UniSTSGRCm37
Cytogenetic Map11B2UniSTS
cM Map1134.15UniSTS
Whitehead Genetic1131.7UniSTS
Whitehead_YAC11 UniSTS
D11Mit318  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381162,206,383 - 62,206,483UniSTSGRCm38
MGSCv371162,019,885 - 62,019,985UniSTSGRCm37
Celera1169,130,488 - 69,130,588UniSTS
Cytogenetic Map11B2UniSTS
cM Map1134.0UniSTS
Whitehead Genetic1131.7UniSTS
Whitehead/MRC_RH11826.78UniSTS
Whitehead_YAC11 UniSTS
UniSTS:224617  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381162,166,910 - 62,167,068UniSTSGRCm38
MGSCv371161,980,412 - 61,980,570UniSTSGRCm37
Cytogenetic Map11B2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001029936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001281818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001310526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK012725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL592080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL646042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF456202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX284675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB722803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF532211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000049836   ⟹   ENSMUSP00000063102
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1161,909,674 - 62,032,552 (+)Ensembl
GRCm38.p6 Ensembl1162,018,848 - 62,141,726 (+)Ensembl
RefSeq Acc Id: ENSMUST00000092415   ⟹   ENSMUSP00000090071
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1161,967,821 - 62,113,831 (+)Ensembl
GRCm38.p6 Ensembl1162,076,995 - 62,223,005 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108709   ⟹   ENSMUSP00000104349
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1161,920,102 - 62,113,839 (+)Ensembl
GRCm38.p6 Ensembl1162,029,276 - 62,223,013 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136971
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1161,847,636 - 61,936,310 (+)Ensembl
GRCm38.p6 Ensembl1161,956,810 - 62,045,484 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200742
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1161,967,871 - 61,969,147 (+)Ensembl
GRCm38.p6 Ensembl1162,077,045 - 62,078,321 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201015   ⟹   ENSMUSP00000144174
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1161,967,825 - 62,110,410 (+)Ensembl
GRCm38.p6 Ensembl1162,076,999 - 62,219,584 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201364   ⟹   ENSMUSP00000143853
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1161,920,079 - 62,111,955 (+)Ensembl
GRCm38.p6 Ensembl1162,029,253 - 62,221,129 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201624   ⟹   ENSMUSP00000144659
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1161,896,176 - 62,028,897 (+)Ensembl
GRCm38.p6 Ensembl1162,005,350 - 62,138,071 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201671   ⟹   ENSMUSP00000144030
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1161,847,589 - 62,028,897 (+)Ensembl
GRCm38.p6 Ensembl1161,956,763 - 62,138,071 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201723   ⟹   ENSMUSP00000144542
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1161,967,917 - 62,029,348 (+)Ensembl
GRCm38.p6 Ensembl1162,077,091 - 62,138,522 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201866
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1161,847,589 - 62,010,277 (+)Ensembl
GRCm38.p6 Ensembl1161,956,763 - 62,119,451 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202178   ⟹   ENSMUSP00000144161
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1161,847,605 - 62,029,349 (+)Ensembl
GRCm38.p6 Ensembl1161,956,779 - 62,138,523 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202179   ⟹   ENSMUSP00000144300
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1161,967,923 - 62,113,839 (+)Ensembl
GRCm38.p6 Ensembl1162,077,097 - 62,223,013 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202389   ⟹   ENSMUSP00000144055
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1161,847,641 - 62,110,261 (+)Ensembl
GRCm38.p6 Ensembl1161,956,815 - 62,219,435 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202744   ⟹   ENSMUSP00000144483
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1161,967,885 - 62,028,910 (+)Ensembl
GRCm38.p6 Ensembl1162,077,059 - 62,138,084 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202869
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1161,866,944 - 61,964,533 (+)Ensembl
GRCm38.p6 Ensembl1161,976,118 - 62,073,707 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202905   ⟹   ENSMUSP00000144311
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1161,909,690 - 62,110,790 (+)Ensembl
GRCm38.p6 Ensembl1162,018,864 - 62,219,964 (+)Ensembl
RefSeq Acc Id: NM_001029936   ⟹   NP_001025107
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,967,850 - 62,113,839 (+)NCBI
GRCm381162,077,024 - 62,223,013 (+)NCBI
MGSCv371161,890,599 - 62,036,515 (+)RGD
Celera1168,970,255 - 69,147,561 (+)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001281818   ⟹   NP_001268747
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,847,589 - 62,113,839 (+)NCBI
GRCm381161,956,763 - 62,223,013 (+)NCBI
Celera1168,970,255 - 69,147,561 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001310526   ⟹   NP_001297455
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,847,589 - 62,032,552 (+)NCBI
GRCm381161,956,763 - 62,141,726 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006533656   ⟹   XP_006533719
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,896,183 - 62,113,831 (+)NCBI
GRCm381162,005,369 - 62,223,005 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017314640   ⟹   XP_017170129
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,967,815 - 62,032,553 (+)NCBI
GRCm381162,076,993 - 62,141,727 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246108   ⟹   XP_030101968
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,967,812 - 62,113,831 (+)NCBI
GRCm381162,076,986 - 62,223,005 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246109   ⟹   XP_030101969
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,967,812 - 62,032,553 (+)NCBI
GRCm381162,076,986 - 62,141,727 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246110   ⟹   XP_030101970
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,896,183 - 62,032,553 (+)NCBI
GRCm381162,005,369 - 62,141,727 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156821   ⟹   XP_036012714
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,967,825 - 62,113,831 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001025107   ⟸   NM_001029936
- Peptide Label: isoform 2
- UniProtKB: Q8BL39 (UniProtKB/Swiss-Prot),   Q8BKR3 (UniProtKB/Swiss-Prot),   Q5SXY1 (UniProtKB/Swiss-Prot),   Q5SXY0 (UniProtKB/Swiss-Prot),   Q5DTQ5 (UniProtKB/Swiss-Prot),   A0A0J9YUR2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001268747   ⟸   NM_001281818
- Peptide Label: isoform 1
- UniProtKB: Q8BL39 (UniProtKB/Swiss-Prot),   Q8BKR3 (UniProtKB/Swiss-Prot),   Q5SXY1 (UniProtKB/Swiss-Prot),   Q5SXY0 (UniProtKB/Swiss-Prot),   Q5DTQ5 (UniProtKB/Swiss-Prot),   A0A0J9YTU3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533719   ⟸   XM_006533656
- Peptide Label: isoform X2
- UniProtKB: Q8BL39 (UniProtKB/Swiss-Prot),   Q8BKR3 (UniProtKB/Swiss-Prot),   Q5SXY1 (UniProtKB/Swiss-Prot),   Q5SXY0 (UniProtKB/Swiss-Prot),   Q5DTQ5 (UniProtKB/Swiss-Prot),   A0A0J9YTU3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001297455   ⟸   NM_001310526
- Peptide Label: isoform 3
- UniProtKB: A0A0J9YUF8 (UniProtKB/TrEMBL),   A0A0J9YV86 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017170129   ⟸   XM_017314640
- Peptide Label: isoform X5
- UniProtKB: A0A0J9YV86 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030101970   ⟸   XM_030246110
- Peptide Label: isoform X4
- UniProtKB: A0A0J9YUF8 (UniProtKB/TrEMBL),   A0A0J9YV86 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030101968   ⟸   XM_030246108
- Peptide Label: isoform X1
- UniProtKB: Q8BL39 (UniProtKB/Swiss-Prot),   Q8BKR3 (UniProtKB/Swiss-Prot),   Q5SXY1 (UniProtKB/Swiss-Prot),   Q5SXY0 (UniProtKB/Swiss-Prot),   Q5DTQ5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030101969   ⟸   XM_030246109
- Peptide Label: isoform X3
- UniProtKB: A0A0J9YV86 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000144055   ⟸   ENSMUST00000202389
RefSeq Acc Id: ENSMUSP00000144300   ⟸   ENSMUST00000202179
RefSeq Acc Id: ENSMUSP00000144161   ⟸   ENSMUST00000202178
RefSeq Acc Id: ENSMUSP00000144483   ⟸   ENSMUST00000202744
RefSeq Acc Id: ENSMUSP00000144311   ⟸   ENSMUST00000202905
RefSeq Acc Id: ENSMUSP00000090071   ⟸   ENSMUST00000092415
RefSeq Acc Id: ENSMUSP00000063102   ⟸   ENSMUST00000049836
RefSeq Acc Id: ENSMUSP00000104349   ⟸   ENSMUST00000108709
RefSeq Acc Id: ENSMUSP00000144174   ⟸   ENSMUST00000201015
RefSeq Acc Id: ENSMUSP00000143853   ⟸   ENSMUST00000201364
RefSeq Acc Id: ENSMUSP00000144542   ⟸   ENSMUST00000201723
RefSeq Acc Id: ENSMUSP00000144659   ⟸   ENSMUST00000201624
RefSeq Acc Id: ENSMUSP00000144030   ⟸   ENSMUST00000201671
RefSeq Acc Id: XP_036012714   ⟸   XM_036156821
- Peptide Label: isoform X6
- UniProtKB: A0A0J9YUG8 (UniProtKB/TrEMBL)
Protein Domains
Calponin-homology (CH)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5SXY1-F1-model_v2 AlphaFold Q5SXY1 1-1067 view protein structure

Promoters
RGD ID:6820694
Promoter ID:MM_KWN:7805
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B6
Transcripts:NM_001029936,   OTTMUST00000013018
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361161,890,086 - 61,890,722 (+)MPROMDB
RGD ID:8674956
Promoter ID:EPDNEW_M15508
Type:multiple initiation site
Name:Specc1_2
Description:Mus musculus sperm antigen with calponin homology and coiled-coildomains 1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15509  EPDNEW_M15510  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381161,956,810 - 61,956,870EPDNEW
RGD ID:8674958
Promoter ID:EPDNEW_M15509
Type:initiation region
Name:Specc1_3
Description:Mus musculus sperm antigen with calponin homology and coiled-coildomains 1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15508  EPDNEW_M15510  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381162,005,385 - 62,005,445EPDNEW
RGD ID:8674960
Promoter ID:EPDNEW_M15510
Type:initiation region
Name:Specc1_1
Description:Mus musculus sperm antigen with calponin homology and coiled-coildomains 1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15508  EPDNEW_M15509  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381162,077,117 - 62,077,177EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2442356 AgrOrtholog
Ensembl Genes ENSMUSG00000042331 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000049836 ENTREZGENE
  ENSMUST00000049836.14 UniProtKB/Swiss-Prot
  ENSMUST00000092415.9 UniProtKB/Swiss-Prot
  ENSMUST00000108709.8 UniProtKB/Swiss-Prot
  ENSMUST00000201015 ENTREZGENE
  ENSMUST00000201015.4 UniProtKB/TrEMBL
  ENSMUST00000201364 ENTREZGENE
  ENSMUST00000201364.4 UniProtKB/TrEMBL
  ENSMUST00000201624.4 UniProtKB/Swiss-Prot
  ENSMUST00000201671.4 UniProtKB/Swiss-Prot
  ENSMUST00000201723 ENTREZGENE
  ENSMUST00000201723.4 UniProtKB/TrEMBL
  ENSMUST00000202178 ENTREZGENE
  ENSMUST00000202178.4 UniProtKB/TrEMBL
  ENSMUST00000202179 ENTREZGENE
  ENSMUST00000202179.2 UniProtKB/TrEMBL
  ENSMUST00000202389 ENTREZGENE
  ENSMUST00000202389.4 UniProtKB/Swiss-Prot
  ENSMUST00000202744.4 UniProtKB/TrEMBL
  ENSMUST00000202905.4 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CH-domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:432572 UniProtKB/TrEMBL
MGD MGI:2442356 ENTREZGENE
NCBI Gene 432572 ENTREZGENE
PANTHER CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CENTROSOMAL PROTEIN 2 UniProtKB/TrEMBL
  CYTOSPIN-B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OS04G0161100 PROTEIN UniProtKB/TrEMBL
Pfam PF00307 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Specc1 PhenoGen
PROSITE PS50021 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00033 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Myosin rod fragments UniProtKB/TrEMBL
  SSF47576 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0J9YTU3 ENTREZGENE, UniProtKB/TrEMBL
  A0A0J9YUF8 ENTREZGENE, UniProtKB/TrEMBL
  A0A0J9YUG8 ENTREZGENE, UniProtKB/TrEMBL
  A0A0J9YUR2 ENTREZGENE, UniProtKB/TrEMBL
  A0A0J9YV47_MOUSE UniProtKB/TrEMBL
  A0A0J9YV86 ENTREZGENE, UniProtKB/TrEMBL
  CYTSB_MOUSE UniProtKB/Swiss-Prot
  Q3UPB2_MOUSE UniProtKB/TrEMBL
  Q5DTQ5 ENTREZGENE
  Q5SXY0 ENTREZGENE
  Q5SXY1 ENTREZGENE
  Q8BKR3 ENTREZGENE
  Q8BL39 ENTREZGENE
UniProt Secondary Q5DTQ5 UniProtKB/Swiss-Prot
  Q5SXY0 UniProtKB/Swiss-Prot
  Q8BKR3 UniProtKB/Swiss-Prot
  Q8BL39 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Specc1  sperm antigen with calponin homology and coiled-coil domains 1  Cytsb  cytospin B  Symbol and/or name change 5135510 APPROVED