Specc1 (sperm antigen with calponin homology and coiled-coil domains 1) - Rat Genome Database

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Gene: Specc1 (sperm antigen with calponin homology and coiled-coil domains 1) Mus musculus
Analyze
Symbol: Specc1
Name: sperm antigen with calponin homology and coiled-coil domains 1
RGD ID: 1616365
MGI Page MGI
Description: Predicted to be involved in actin cytoskeleton organization. Predicted to localize to cytoskeleton; cytosol; and nuclear lumen. Is expressed in aorta; liver; molar; and ventricular layer. Orthologous to human SPECC1 (sperm antigen with calponin homology and coiled-coil domains 1); INTERACTS WITH 1,2-dimethylhydrazine; atrazine; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2810012G08Rik; B230396K10Rik; cytospin B; cytospin-B; Cyts; Cytsb; KIAA4061; mKIAA4061; RP23-102H10.1; spectrin domain with coiled-coils 1; sperm antigen HCMOGT-1-like
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391161,847,589 - 62,113,839 (+)NCBIGRCm39mm39
GRCm39 Ensembl1161,847,589 - 62,113,839 (+)Ensembl
GRCm381161,956,763 - 62,223,013 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,956,763 - 62,223,013 (+)EnsemblGRCm38mm10GRCm38
MGSCv371161,890,599 - 62,036,515 (+)NCBIGRCm37mm9NCBIm37
MGSCv361161,893,292 - 62,039,208 (+)NCBImm8
Celera1169,004,409 - 69,147,561 (+)NCBICelera
Cytogenetic Map11B2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17114649   PMID:18799693  
PMID:21267068   PMID:21873635   PMID:22846151   PMID:22922362   PMID:23299920   PMID:29254152   PMID:29518331   PMID:30196744   PMID:32098917   PMID:32581705  


Genomics

Comparative Map Data
Specc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391161,847,589 - 62,113,839 (+)NCBIGRCm39mm39
GRCm39 Ensembl1161,847,589 - 62,113,839 (+)Ensembl
GRCm381161,956,763 - 62,223,013 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,956,763 - 62,223,013 (+)EnsemblGRCm38mm10GRCm38
MGSCv371161,890,599 - 62,036,515 (+)NCBIGRCm37mm9NCBIm37
MGSCv361161,893,292 - 62,039,208 (+)NCBImm8
Celera1169,004,409 - 69,147,561 (+)NCBICelera
Cytogenetic Map11B2NCBI
SPECC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1720,008,865 - 20,319,026 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1720,009,344 - 20,319,026 (+)EnsemblGRCh38hg38GRCh38
GRCh381720,009,301 - 20,319,026 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371719,912,672 - 20,222,339 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361719,930,927 - 20,158,660 (+)NCBINCBI36hg18NCBI36
Celera1717,404,264 - 17,631,972 (+)NCBI
Cytogenetic Map17p11.2NCBI
HuRef1719,291,394 - 19,596,822 (+)NCBIHuRef
CHM1_11719,921,409 - 20,226,847 (+)NCBICHM1_1
Specc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21046,638,947 - 46,912,989 (+)NCBI
Rnor_6.0 Ensembl1048,240,127 - 48,542,292 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01048,240,291 - 48,542,171 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01048,031,413 - 48,330,676 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41048,118,178 - 48,309,501 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11048,234,661 - 48,322,851 (+)NCBI
Celera1045,885,420 - 46,075,919 (+)NCBICelera
Cytogenetic Map10q22-q23NCBI
SPECC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11735,955,207 - 36,253,178 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1735,951,060 - 36,253,178 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01730,800,973 - 31,114,322 (-)NCBIMhudiblu_PPA_v0panPan3
SPECC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1539,936,851 - 40,163,249 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl539,940,165 - 40,137,627 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha540,082,543 - 40,309,634 (-)NCBI
ROS_Cfam_1.0540,046,544 - 40,273,530 (-)NCBI
UMICH_Zoey_3.1540,018,605 - 40,245,168 (-)NCBI
UNSW_CanFamBas_1.0539,963,873 - 40,190,657 (-)NCBI
UU_Cfam_GSD_1.0540,155,296 - 40,383,379 (-)NCBI
Specc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560258,897,988 - 59,170,337 (+)NCBI
SpeTri2.0NW_004936821641,863 - 914,188 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPECC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1259,466,791 - 59,654,130 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11259,466,778 - 59,705,602 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SPECC1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11618,585,965 - 18,896,161 (+)NCBI
ChlSab1.1 Ensembl1618,737,158 - 18,893,994 (+)Ensembl
Specc1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248774,499,581 - 4,886,580 (-)NCBI

Position Markers
D11Mit261  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381162,151,201 - 62,151,308UniSTSGRCm38
MGSCv371161,964,703 - 61,964,810UniSTSGRCm37
Cytogenetic Map11B2UniSTS
cM Map1134.15UniSTS
Whitehead Genetic1131.7UniSTS
Whitehead_YAC11 UniSTS
D11Mit318  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381162,206,383 - 62,206,483UniSTSGRCm38
MGSCv371162,019,885 - 62,019,985UniSTSGRCm37
Celera1169,130,488 - 69,130,588UniSTS
Cytogenetic Map11B2UniSTS
cM Map1134.0UniSTS
Whitehead Genetic1131.7UniSTS
Whitehead/MRC_RH11826.78UniSTS
Whitehead_YAC11 UniSTS
UniSTS:224617  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381162,166,910 - 62,167,068UniSTSGRCm38
MGSCv371161,980,412 - 61,980,570UniSTSGRCm37
Cytogenetic Map11B2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11330000063000000Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111160000068600000Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111180000066100000Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1231863768609504Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111231863768609504Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111231863768609504Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1231863768609504Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1231863768609504Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111231863768609504Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1231863768609504Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1231863768609504Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1231863768609504Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111231863768609504Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111231863768609504Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111231863769794121Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111710617567187585Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111783196668609504Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112827504662275149Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112867832062678320Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112881775462817873Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113111738265117382Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113220975066209867Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113568778969794161Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113661246070618665Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113672273870723028Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5417484463428696Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115417484467187585Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115419011565213015Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5539415972319101Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115936579169591873Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3894
Count of miRNA genes:897
Interacting mature miRNAs:1194
Transcripts:ENSMUST00000049836, ENSMUST00000092415, ENSMUST00000108709, ENSMUST00000136971
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001029936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001281818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001310526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK012725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL592080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL646042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF456202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX284675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB722803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF532211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000049836   ⟹   ENSMUSP00000063102
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1162,018,848 - 62,141,726 (+)Ensembl
RefSeq Acc Id: ENSMUST00000092415   ⟹   ENSMUSP00000090071
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1162,076,995 - 62,223,005 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108709   ⟹   ENSMUSP00000104349
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1162,029,276 - 62,223,013 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136971
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1161,956,810 - 62,045,484 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200742
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1162,077,045 - 62,078,321 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201015   ⟹   ENSMUSP00000144174
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1162,076,999 - 62,219,584 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201364   ⟹   ENSMUSP00000143853
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1162,029,253 - 62,221,129 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201624   ⟹   ENSMUSP00000144659
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1162,005,350 - 62,138,071 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201671   ⟹   ENSMUSP00000144030
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1161,956,763 - 62,138,071 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201723   ⟹   ENSMUSP00000144542
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1162,077,091 - 62,138,522 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201866
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1161,956,763 - 62,119,451 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202178   ⟹   ENSMUSP00000144161
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1161,956,779 - 62,138,523 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202179   ⟹   ENSMUSP00000144300
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1162,077,097 - 62,223,013 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202389   ⟹   ENSMUSP00000144055
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1161,956,815 - 62,219,435 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202744   ⟹   ENSMUSP00000144483
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1162,077,059 - 62,138,084 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202869
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1161,976,118 - 62,073,707 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202905   ⟹   ENSMUSP00000144311
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1162,018,864 - 62,219,964 (+)Ensembl
RefSeq Acc Id: NM_001029936   ⟹   NP_001025107
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,967,850 - 62,113,839 (+)NCBI
GRCm381162,077,024 - 62,223,013 (+)NCBI
MGSCv371161,890,599 - 62,036,515 (+)RGD
Celera1168,970,255 - 69,147,561 (+)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001281818   ⟹   NP_001268747
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,847,589 - 62,113,839 (+)NCBI
GRCm381161,956,763 - 62,223,013 (+)NCBI
Celera1168,970,255 - 69,147,561 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001310526   ⟹   NP_001297455
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,847,589 - 62,032,552 (+)NCBI
GRCm381161,956,763 - 62,141,726 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006533656   ⟹   XP_006533719
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,896,183 - 62,113,831 (+)NCBI
GRCm381162,005,369 - 62,223,005 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017314640   ⟹   XP_017170129
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,967,815 - 62,032,553 (+)NCBI
GRCm381162,076,993 - 62,141,727 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246108   ⟹   XP_030101968
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,967,812 - 62,113,831 (+)NCBI
GRCm381162,076,986 - 62,223,005 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246109   ⟹   XP_030101969
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,967,812 - 62,032,553 (+)NCBI
GRCm381162,076,986 - 62,141,727 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246110   ⟹   XP_030101970
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,896,183 - 62,032,553 (+)NCBI
GRCm381162,005,369 - 62,141,727 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156821   ⟹   XP_036012714
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,967,825 - 62,113,831 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001025107   ⟸   NM_001029936
- Peptide Label: isoform 2
- UniProtKB: A0A0J9YUR2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001268747   ⟸   NM_001281818
- Peptide Label: isoform 1
- UniProtKB: A0A0J9YTU3 (UniProtKB/TrEMBL),   Q3UPB2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533719   ⟸   XM_006533656
- Peptide Label: isoform X2
- UniProtKB: A0A0J9YTU3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001297455   ⟸   NM_001310526
- Peptide Label: isoform 3
- UniProtKB: A0A0J9YUF8 (UniProtKB/TrEMBL),   Q3UPB2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017170129   ⟸   XM_017314640
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_030101970   ⟸   XM_030246110
- Peptide Label: isoform X4
RefSeq Acc Id: XP_030101968   ⟸   XM_030246108
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030101969   ⟸   XM_030246109
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000144055   ⟸   ENSMUST00000202389
RefSeq Acc Id: ENSMUSP00000144300   ⟸   ENSMUST00000202179
RefSeq Acc Id: ENSMUSP00000144161   ⟸   ENSMUST00000202178
RefSeq Acc Id: ENSMUSP00000144483   ⟸   ENSMUST00000202744
RefSeq Acc Id: ENSMUSP00000144311   ⟸   ENSMUST00000202905
RefSeq Acc Id: ENSMUSP00000090071   ⟸   ENSMUST00000092415
RefSeq Acc Id: ENSMUSP00000063102   ⟸   ENSMUST00000049836
RefSeq Acc Id: ENSMUSP00000104349   ⟸   ENSMUST00000108709
RefSeq Acc Id: ENSMUSP00000144174   ⟸   ENSMUST00000201015
RefSeq Acc Id: ENSMUSP00000143853   ⟸   ENSMUST00000201364
RefSeq Acc Id: ENSMUSP00000144542   ⟸   ENSMUST00000201723
RefSeq Acc Id: ENSMUSP00000144659   ⟸   ENSMUST00000201624
RefSeq Acc Id: ENSMUSP00000144030   ⟸   ENSMUST00000201671
RefSeq Acc Id: XP_036012714   ⟸   XM_036156821
- Peptide Label: isoform X6
Protein Domains
Calponin-homology (CH)

Promoters
RGD ID:6820694
Promoter ID:MM_KWN:7805
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B6
Transcripts:NM_001029936,   OTTMUST00000013018
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361161,890,086 - 61,890,722 (+)MPROMDB
RGD ID:8674956
Promoter ID:EPDNEW_M15508
Type:multiple initiation site
Name:Specc1_2
Description:Mus musculus sperm antigen with calponin homology and coiled-coildomains 1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15509  EPDNEW_M15510  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381161,956,810 - 61,956,870EPDNEW
RGD ID:8674958
Promoter ID:EPDNEW_M15509
Type:initiation region
Name:Specc1_3
Description:Mus musculus sperm antigen with calponin homology and coiled-coildomains 1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15508  EPDNEW_M15510  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381162,005,385 - 62,005,445EPDNEW
RGD ID:8674960
Promoter ID:EPDNEW_M15510
Type:initiation region
Name:Specc1_1
Description:Mus musculus sperm antigen with calponin homology and coiled-coildomains 1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15508  EPDNEW_M15509  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381162,077,117 - 62,077,177EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2442356 AgrOrtholog
Ensembl Genes ENSMUSG00000042331 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000063102 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000090071 UniProtKB/Swiss-Prot
  ENSMUSP00000104349 UniProtKB/Swiss-Prot
  ENSMUSP00000143853 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000144030 UniProtKB/Swiss-Prot
  ENSMUSP00000144055 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000144161 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000144174 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000144300 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000144311 UniProtKB/Swiss-Prot
  ENSMUSP00000144483 UniProtKB/TrEMBL
  ENSMUSP00000144542 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000144659 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000049836 UniProtKB/Swiss-Prot
  ENSMUST00000092415 UniProtKB/Swiss-Prot
  ENSMUST00000108709 UniProtKB/Swiss-Prot
  ENSMUST00000201015 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000201364 UniProtKB/TrEMBL
  ENSMUST00000201624 UniProtKB/Swiss-Prot
  ENSMUST00000201671 UniProtKB/Swiss-Prot
  ENSMUST00000201723 UniProtKB/TrEMBL
  ENSMUST00000202178 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000202179 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000202389 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000202744 UniProtKB/TrEMBL
  ENSMUST00000202905 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CH-domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:432572 UniProtKB/TrEMBL
MGD MGI:2442356 ENTREZGENE
NCBI Gene 432572 ENTREZGENE
Pfam PF00307 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Specc1 PhenoGen
PROSITE PS50021 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00033 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47576 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0J9YTU3 ENTREZGENE, UniProtKB/TrEMBL
  A0A0J9YUF8 ENTREZGENE, UniProtKB/TrEMBL
  A0A0J9YUG8_MOUSE UniProtKB/TrEMBL
  A0A0J9YUR2 ENTREZGENE, UniProtKB/TrEMBL
  A0A0J9YV47_MOUSE UniProtKB/TrEMBL
  A0A0J9YV86_MOUSE UniProtKB/TrEMBL
  CYTSB_MOUSE UniProtKB/Swiss-Prot
  Q3UPB2 ENTREZGENE, UniProtKB/TrEMBL
  Q5SXY1 ENTREZGENE
UniProt Secondary Q5DTQ5 UniProtKB/Swiss-Prot
  Q5SXY0 UniProtKB/Swiss-Prot
  Q8BKR3 UniProtKB/Swiss-Prot
  Q8BL39 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Specc1  sperm antigen with calponin homology and coiled-coil domains 1  Cytsb  cytospin B  Symbol and/or name change 5135510 APPROVED