Gm5553 (predicted gene 5553) - Rat Genome Database

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Gene: Gm5553 (predicted gene 5553) Mus musculus
Analyze
Symbol: Gm5553
Name: predicted gene 5553
RGD ID: 1616355
MGI Page MGI
Description:
Type: protein-coding (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: EG433874; Gm43105; ORM1-like protein 2; predicted gene, EG433874
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39534,463,969 - 34,464,585 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl534,464,062 - 34,464,520 (-)EnsemblGRCm39 Ensembl
GRCm38534,306,625 - 34,307,241 (-)NCBIGRCm38GRCm38mm10GRCm38
MGSCv37534,649,364 - 34,649,825 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36534,623,200 - 34,624,091 (-)NCBIMGSCv36mm8
Celera531,777,241 - 31,777,702 (-)NCBICelera
Cytogenetic Map5B2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Gm5553
1 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10401122Pgia41_mproteoglycan induced arthritis 41 (mouse)Not determined582314434823280Mouse
15039371Nmrs21_mNAFLD-associated magnetic resonance shift 21 (mouse)5350482337504823Mouse
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5538452039384652Mouse
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5812411742124239Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5891594940529869Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51356315247563152Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51563408449634190Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52068699354687134Mouse
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52166729555667403Mouse
11537368Hmtb10_mhemostasis and thrombosis 10 (mouse)52210082354500318Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52210082364806579Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
1300701Cd8ts1_mCD8 T cell subset 1 (mouse)Not determined52721534861215451Mouse
1301555Alcp10_malcohol preference locus 10 (mouse)Not determined53102427565024480Mouse
1301403Alcp9_malcohol preference locus 9 (mouse)Not determined53102427565024480Mouse
11353827Hplq1_mhot plate latency 1 (mouse)53157045865570458Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
10043995Hbnr9_mHeligmosomoides bakeri nematode resistance 9 (mouse)Not determined53348866767488876Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_036165676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC104889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000202987
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl534,464,062 - 34,464,520 (-)Ensembl
RefSeq Acc Id: XM_036165676   ⟹   XP_036021569
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39534,463,969 - 34,464,585 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_036021569 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_036021569   ⟸   XM_036165676


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000107006 Ensembl
MGD MGI:3646114 ENTREZGENE
NCBI Gene 433874 ENTREZGENE
PhenoGen Gm5553 PhenoGen