Armcx7-ps (armadillo repeat containing, X-linked 7, pseudogene) - Rat Genome Database

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Gene: Armcx7-ps (armadillo repeat containing, X-linked 7, pseudogene) Mus musculus
Analyze
Symbol: Armcx7-ps
Name: armadillo repeat containing, X-linked 7, pseudogene
RGD ID: 1616307
MGI Page MGI
Description: Orthologous to human ARMCX7P (armadillo repeat containing X-linked 7, pseudogene).
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG621098; Gm16397
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Related Functional Gene: Armcx6  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X133,632,243 - 133,633,531 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX133,632,320 - 133,632,813 (+)EnsemblGRCm39 Ensembl
GRCm38X134,731,494 - 134,732,782 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX134,731,571 - 134,732,064 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X131,266,033 - 131,267,321 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X131,266,034 - 131,267,322 (+)NCBIMGSCv36mm8
CeleraX117,612,661 - 117,613,949 (+)NCBICelera
Cytogenetic MapXE3NCBI
cM MapX56.25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Armcx7-ps
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X133,632,243 - 133,633,531 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX133,632,320 - 133,632,813 (+)EnsemblGRCm39 Ensembl
GRCm38X134,731,494 - 134,732,782 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX134,731,571 - 134,732,064 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X131,266,033 - 131,267,321 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X131,266,034 - 131,267,322 (+)NCBIMGSCv36mm8
CeleraX117,612,661 - 117,613,949 (+)NCBICelera
Cytogenetic MapXE3NCBI
cM MapX56.25NCBI
ARMCX7P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X101,597,480 - 101,598,268 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX101,597,510 - 101,598,071 (+)EnsemblGRCh38hg38GRCh38
GRCh37X100,852,458 - 100,853,246 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X100,739,103 - 100,740,305 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX101,371,841 - 101,372,511 (+)NCBICelera
Cytogenetic MapXq22.1NCBI
HuRefX90,660,163 - 90,660,860 (+)NCBIHuRef
CHM1_1X100,746,194 - 100,746,891 (+)NCBICHM1_1
T2T-CHM13v2.0X100,042,101 - 100,042,889 (+)NCBIT2T-CHM13v2.0

Variants

.
Variants in Armcx7-ps
23 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:223
Count of miRNA genes:206
Interacting mature miRNAs:220
Transcripts:ENSMUST00000122201
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX120993165160213038Mouse
25314309Syncl5_msynaptonemal complex length 5 (mouse)X121909697152582996Mouse
10412164Cmv2_mcytomegalovirus resistance 2 (mouse)Not determinedX125685149159685269Mouse
13824981Svwq2_mseminal vesicle weight QTL 2 (mouse)X128900749153782996Mouse
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX133540040165298595Mouse

Markers in Region
AW060994  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X134,732,542 - 134,732,654UniSTSGRCm38
GRCm38X134,748,585 - 134,748,697UniSTSGRCm38
MGSCv37X131,267,081 - 131,267,193UniSTSGRCm37
MGSCv37X131,283,124 - 131,283,236UniSTSGRCm37
CeleraX117,627,980 - 117,628,080UniSTS
CeleraX117,613,709 - 117,613,821UniSTS
Cytogenetic MapXE3UniSTS
Whitehead/MRC_RHX1503.81UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_012680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL772348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000122201
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX133,632,320 - 133,632,813 (+)Ensembl
GRCm38.p6 EnsemblX134,731,571 - 134,732,064 (+)Ensembl

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3648067 AgrOrtholog
Ensembl Genes ENSMUSG00000081972 Ensembl
MGD MGI:3648067 ENTREZGENE
NCBI Gene 100040933 ENTREZGENE
PhenoGen Armcx7-ps PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-17 Armcx7-ps  armadillo repeat containing, X-linked 7, pseudogene  Gm16397  predicted pseudogene 16397  Symbol and/or name updated 27372883 PROVISIONAL
2011-07-27 Gm16397  predicted pseudogene 16397  Gm16397  predicted gene 16397  Symbol and/or name change 5135510 APPROVED