Clgn (calmegin) - Rat Genome Database
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Gene: Clgn (calmegin) Mus musculus
Analyze
Symbol: Clgn
Name: calmegin
RGD ID: 1616006
MGI Page MGI
Description: Exhibits calcium ion binding activity and protein folding chaperone. Involved in binding activity of sperm to zona pellucida and protein-containing complex assembly. Localizes to endoplasmic reticulum and nuclear envelope. Is expressed in several structures, including alimentary system; brain; gallbladder; genitourinary system; and limb segment. Orthologous to human CLGN (calmegin).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: 4930459O04Rik; A2/; A2/6; AI528775; C; calne; calnexin-T; Cln; MEG 1 antigen
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,116,454 - 84,155,181 (+)NCBIGRCm39mm39
GRCm38883,389,790 - 83,428,552 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl883,389,867 - 83,428,552 (+)EnsemblGRCm38mm10GRCm38
MGSCv37885,913,790 - 85,950,728 (+)NCBIGRCm37mm9NCBIm37
MGSCv36886,279,996 - 86,316,934 (+)NCBImm8
Celera887,681,299 - 87,717,622 (+)NCBICelera
Cytogenetic Map8C2NCBI
cM Map839.97NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Dwarfism  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,3-dimethoxynaphthalene-1,4-dione  (ISO)
3,4-dichloroaniline  (ISO)
3,7-dihydropurine-6-thione  (ISO)
6-propyl-2-thiouracil  (ISO)
6alpha-methylprednisolone  (ISO)
8-Br-cAMP  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
ampicillin  (ISO)
antimony(0)  (ISO)
arsenous acid  (ISO)
azathioprine  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bicalutamide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
chromium atom  (ISO)
cisplatin  (ISO)
clorgyline  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
disodium selenite  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (EXP,ISO)
formaldehyde  (ISO)
irinotecan  (ISO)
lead diacetate  (EXP)
leflunomide  (ISO)
lucanthone  (ISO)
mercaptopurine  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
mitomycin C  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenylmercury acetate  (ISO)
piroxicam  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
prednisolone  (ISO)
progesterone  (ISO)
purine-6-thiol  (ISO)
quercetin  (ISO)
quinolin-8-ol  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium aurothiomalate  (ISO)
sulforaphane  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8126001   PMID:8188695   PMID:8889548   PMID:9177349   PMID:9403069   PMID:9434179   PMID:9780330   PMID:9922113   PMID:10349636   PMID:10495883   PMID:10766740   PMID:11042159  
PMID:11076861   PMID:11217851   PMID:11702780   PMID:11784061   PMID:12376108   PMID:12432070   PMID:12466851   PMID:12477932   PMID:14610273   PMID:14736746   PMID:15151931   PMID:15546883  
PMID:16141072   PMID:16141073   PMID:16264275   PMID:16292313   PMID:16870943   PMID:17507649   PMID:18199882   PMID:19538736   PMID:19735653   PMID:21072209   PMID:21267068   PMID:21873635  
PMID:22357757   PMID:22621904   PMID:24067652   PMID:24357627   PMID:24501175   PMID:28378742   PMID:29875359  


Genomics

Comparative Map Data
Clgn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,116,454 - 84,155,181 (+)NCBIGRCm39mm39
GRCm38883,389,790 - 83,428,552 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl883,389,867 - 83,428,552 (+)EnsemblGRCm38mm10GRCm38
MGSCv37885,913,790 - 85,950,728 (+)NCBIGRCm37mm9NCBIm37
MGSCv36886,279,996 - 86,316,934 (+)NCBImm8
Celera887,681,299 - 87,717,622 (+)NCBICelera
Cytogenetic Map8C2NCBI
cM Map839.97NCBI
CLGN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl4140,388,453 - 140,427,661 (-)EnsemblGRCh38hg38GRCh38
GRCh384140,388,453 - 140,427,648 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh374141,309,607 - 141,348,815 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364141,529,057 - 141,568,232 (-)NCBINCBI36hg18NCBI36
Build 344141,667,213 - 141,706,387NCBI
Celera4138,639,605 - 138,678,818 (-)NCBI
Cytogenetic Map4q31.1NCBI
HuRef4137,040,252 - 137,079,290 (-)NCBIHuRef
CHM1_14141,286,961 - 141,326,164 (-)NCBICHM1_1
Clgn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01924,545,257 - 24,578,527 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1924,545,318 - 24,576,798 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01935,523,686 - 35,556,991 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41926,404,126 - 26,436,081 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1924,238,158 - 24,269,769 (-)NCBICelera
Cytogenetic Map19q11NCBI
Clgn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554283,361,635 - 3,402,075 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554283,359,231 - 3,406,221 (+)NCBIChiLan1.0ChiLan1.0
CLGN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14144,061,617 - 144,099,419 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4144,060,656 - 144,099,419 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04132,756,193 - 132,794,805 (-)NCBIMhudiblu_PPA_v0panPan3
CLGN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl192,397,125 - 2,455,448 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1192,397,122 - 2,445,878 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Clgn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365357,358,960 - 7,399,535 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLGN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl886,621,178 - 86,675,796 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1886,621,120 - 86,674,994 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2892,112,922 - 92,166,804 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLGN
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl787,342,718 - 87,374,406 (-)Ensembl
ChlSab1.1787,342,185 - 87,375,051 (-)NCBI
Clgn
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462500628,014 - 88,801 (-)NCBI

Position Markers
Clgn  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37885,950,432 - 85,950,593UniSTSGRCm37
Celera887,717,332 - 87,717,487UniSTS
Cytogenetic Map8C2UniSTS
cM Map838.0UniSTS
cM Map838.0UniSTS
U08373  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38883,426,601 - 83,426,708UniSTSGRCm38
MGSCv37885,950,500 - 85,950,607UniSTSGRCm37
Celera887,717,400 - 87,717,501UniSTS
Cytogenetic Map8C2UniSTS
cM Map838.0UniSTS
Whitehead/MRC_RH8971.88UniSTS
AI528775  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38883,426,588 - 83,426,708UniSTSGRCm38
MGSCv37885,950,487 - 85,950,607UniSTSGRCm37
Celera887,717,387 - 87,717,501UniSTS
Cytogenetic Map8C2UniSTS
cM Map838.0UniSTS
Whitehead/MRC_RH8994.46UniSTS
UniSTS:235951  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38883,428,124 - 83,428,437UniSTSGRCm38
MGSCv37885,952,023 - 85,952,336UniSTSGRCm37
Celera887,718,917 - 87,719,230UniSTS
Cytogenetic Map8C2UniSTS
cM Map838.0UniSTS
mClgn  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38883,424,156 - 83,425,628UniSTSGRCm38
MGSCv37885,948,055 - 85,949,527UniSTSGRCm37
Celera887,714,954 - 87,716,428UniSTS
Cytogenetic Map8C2UniSTS
cM Map838.0UniSTS
Clgn  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38883,426,533 - 83,426,694UniSTSGRCm38
MGSCv37885,950,432 - 85,950,593UniSTSGRCm37
Celera887,717,332 - 87,717,487UniSTS
Cytogenetic Map8C2UniSTS
cM Map838.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined878518613112518703Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879082178113082403Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88006677589014359Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881092664115092664Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)881619151115619151Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:612
Count of miRNA genes:392
Interacting mature miRNAs:447
Transcripts:ENSMUST00000002259, ENSMUST00000109831
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001329627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC155304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW456491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY100733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D14117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D86323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U08373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000002259   ⟹   ENSMUSP00000002259
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl883,389,867 - 83,428,552 (+)Ensembl
RefSeq Acc Id: ENSMUST00000109831   ⟹   ENSMUSP00000105457
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl883,389,878 - 83,426,831 (+)Ensembl
RefSeq Acc Id: NM_001329627   ⟹   NP_001316556
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,116,471 - 84,155,181 (+)NCBI
GRCm38883,389,842 - 83,428,552 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001329680   ⟹   NP_001316609
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,116,471 - 84,155,181 (+)NCBI
GRCm38883,389,842 - 83,428,552 (+)NCBI
Sequence:
RefSeq Acc Id: NM_009904   ⟹   NP_034034
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,116,471 - 84,155,181 (+)NCBI
GRCm38883,389,842 - 83,428,552 (+)NCBI
MGSCv37885,913,790 - 85,950,728 (+)RGD
Celera887,681,299 - 87,717,622 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006530636   ⟹   XP_006530699
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,116,457 - 84,154,564 (+)NCBI
GRCm38883,389,792 - 83,427,935 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011248296   ⟹   XP_011246598
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,116,454 - 84,155,181 (+)NCBI
GRCm38883,389,790 - 83,428,552 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011248297   ⟹   XP_011246599
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,116,634 - 84,154,564 (+)NCBI
GRCm38883,389,984 - 83,427,935 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011248298   ⟹   XP_011246600
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,116,454 - 84,154,564 (+)NCBI
GRCm38883,389,790 - 83,427,935 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017312554   ⟹   XP_017168043
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,116,483 - 84,154,564 (+)NCBI
GRCm38883,389,854 - 83,427,935 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243275   ⟹   XP_030099135
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,116,485 - 84,154,564 (+)NCBI
GRCm38883,389,856 - 83,427,935 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243276   ⟹   XP_030099136
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,116,457 - 84,154,564 (+)NCBI
GRCm38883,389,792 - 83,427,935 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_034034   ⟸   NM_009904
- Peptide Label: isoform 1 precursor
- UniProtKB: P52194 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006530699   ⟸   XM_006530636
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011246598   ⟸   XM_011248296
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011246600   ⟸   XM_011248298
- Peptide Label: isoform X2
- UniProtKB: P52194 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011246599   ⟸   XM_011248297
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017168043   ⟸   XM_017312554
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_030099136   ⟸   XM_030243276
- Peptide Label: isoform X4
RefSeq Acc Id: NP_001316609   ⟸   NM_001329680
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001316556   ⟸   NM_001329627
- Peptide Label: isoform 1 precursor
- UniProtKB: P52194 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030099135   ⟸   XM_030243275
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000002259   ⟸   ENSMUST00000002259
RefSeq Acc Id: ENSMUSP00000105457   ⟸   ENSMUST00000109831

Promoters
RGD ID:8667597
Promoter ID:EPDNEW_M11830
Type:initiation region
Name:Clgn_1
Description:Mus musculus calmegin , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38883,389,864 - 83,389,924EPDNEW
RGD ID:6842945
Promoter ID:MM_KWN:55000
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000052719,   UC009MKD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36885,913,606 - 85,914,106 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107472 AgrOrtholog
Ensembl Genes ENSMUSG00000002190 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000002259 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000105457 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000002259 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000109831 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 2.10.250.10 UniProtKB/Swiss-Prot
InterPro Calret/calnex UniProtKB/Swiss-Prot
  Calret/calnex_CS UniProtKB/Swiss-Prot
  Calreticulin/calnexin_P_dom_sf UniProtKB/Swiss-Prot
  ConA-like_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:12745 UniProtKB/Swiss-Prot
MGD MGI:107472 ENTREZGENE
NCBI Gene 12745 ENTREZGENE
PANTHER PTHR11073 UniProtKB/Swiss-Prot
Pfam Calreticulin UniProtKB/Swiss-Prot
PhenoGen Clgn PhenoGen
PRINTS CALRETICULIN UniProtKB/Swiss-Prot
PROSITE CALRETICULIN_1 UniProtKB/Swiss-Prot
  CALRETICULIN_2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49899 UniProtKB/Swiss-Prot
  SSF63887 UniProtKB/Swiss-Prot
UniGene Mm.358581 ENTREZGENE
  Mm.426481 ENTREZGENE
UniProt CLGN_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q80YU3 UniProtKB/Swiss-Prot
  Q9D2K5 UniProtKB/Swiss-Prot