Tsc22d1 (TSC22 domain family, member 1) - Rat Genome Database

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Gene: Tsc22d1 (TSC22 domain family, member 1) Mus musculus
Analyze
Symbol: Tsc22d1
Name: TSC22 domain family, member 1
RGD ID: 1615941
MGI Page MGI
Description: Predicted to enable identical protein binding activity. Involved in negative regulation of hematopoietic stem cell proliferation. Located in cytoplasm and nucleus. Is expressed in several structures, including alimentary system; central nervous system; early conceptus; genitourinary system; and sensory organ. Orthologous to human TSC22D1 (TSC22 domain family member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA589566; AW105905; Egr; Egr5; Gm19597; predicted gene, 19597; regulatory protein TSC-22; regulatory protein Tsc22; Tgfb-stimulated clone 22 homolog; Tgfb1i; Tgfb1i4; transforming growth factor beta 1 induced transcript 4; TSC; TSC-2; TSC-22; Tsc22; TSC22 domain family protein 1; Tsc22-related inducible leucine zipper 1b
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391476,652,401 - 76,745,205 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1476,652,401 - 76,745,205 (+)EnsemblGRCm39 Ensembl
GRCm381476,414,961 - 76,507,765 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1476,414,961 - 76,507,765 (+)EnsemblGRCm38mm10GRCm38
MGSCv371476,815,628 - 76,907,573 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361475,149,976 - 75,241,916 (+)NCBIMGSCv36mm8
Celera1473,915,823 - 74,008,437 (+)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1440.44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(-)-demecolcine  (ISO)
(1->4)-beta-D-glucan  (EXP)
(2,4,5-trichlorophenoxy)acetic acid  (EXP)
(S)-amphetamine  (EXP)
(S)-nicotine  (EXP)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-acetamidofluorene  (ISO)
2-methylcholine  (ISO)
2-nitrofluorene  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
4-acetylaminofluorene  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
acrolein  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
albendazole  (ISO)
aldehydo-D-glucose  (EXP)
aldrin  (EXP)
alpha-pinene  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
antirheumatic drug  (ISO)
Archazolid B  (ISO)
Aroclor 1254  (EXP,ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzene  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
benzo[e]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bleomycin A5  (ISO)
Brodifacoum  (ISO)
bromobenzene  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (EXP,ISO)
calciol  (EXP)
captan  (ISO)
carbon nanotube  (EXP)
chloroethene  (EXP)
choline  (EXP)
chrysene  (EXP)
cisplatin  (ISO)
clobetasol  (EXP)
clofibrate  (ISO)
clofibric acid  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (EXP,ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
D-glucose  (EXP)
decabromodiphenyl ether  (ISO)
dexamethasone  (EXP)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (EXP)
dibutyl phthalate  (EXP,ISO)
diclofenac  (EXP)
diethyl maleate  (ISO)
diethylstilbestrol  (ISO)
diquat  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
fipronil  (ISO)
flutamide  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
fulvestrant  (ISO)
furan  (ISO)
gefitinib  (EXP)
genistein  (ISO)
gentamycin  (ISO)
glucose  (EXP)
hexachlorobenzene  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
inulin  (EXP)
ivermectin  (ISO)
L-methionine  (EXP)
lead diacetate  (EXP)
lead(0)  (ISO)
leflunomide  (ISO)
losartan  (ISO)
methapyrilene  (ISO)
methimazole  (ISO)
methyl methanesulfonate  (ISO)
mifepristone  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
naphthalene  (EXP)
nicotine  (EXP)
oxaliplatin  (ISO)
oxazepam  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP,ISO)
pinosylvin  (ISO)
piperonyl butoxide  (ISO)
pirinixic acid  (EXP,ISO)
piroxicam  (ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP,ISO)
propiconazole  (EXP)
resveratrol  (EXP,ISO)
ritodrine  (EXP)
rotenone  (ISO)
SB 203580  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP)
sodium arsenite  (ISO)
Soman  (ISO)
streptozocin  (ISO)
succimer  (EXP)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
tamoxifen  (EXP)
testosterone  (EXP)
tetrachloroethene  (EXP)
tetrachloromethane  (EXP,ISO)
tetraphene  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trans-pinosylvin  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
triphenyl phosphate  (ISO)
triptonide  (EXP)
troglitazone  (ISO)
urethane  (ISO)
valdecoxib  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
vincristine  (ISO)
zearalenone  (ISO)
zinc sulfate  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IDA,ISO)
cytosol  (IBA)
membrane  (IEA)
mitochondrion  (ISO)
nucleus  (IBA,IDA,ISO)
plasma membrane  (ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1587811   PMID:7901004   PMID:8651929   PMID:8889548   PMID:9022669   PMID:9371744   PMID:9787079   PMID:10349636   PMID:10381577   PMID:10473130   PMID:10725249   PMID:10906776  
PMID:10922068   PMID:11042159   PMID:11044607   PMID:11076861   PMID:11180952   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:14681479   PMID:14708594  
PMID:15317747   PMID:15368895   PMID:15618518   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16759280   PMID:17533171   PMID:17967808   PMID:18287559   PMID:18340042   PMID:18799693  
PMID:18973680   PMID:19329776   PMID:19449303   PMID:19745830   PMID:20059953   PMID:20412781   PMID:20436479   PMID:20713358   PMID:21267068   PMID:21764761   PMID:21873635   PMID:22371338  
PMID:22560297   PMID:23305244   PMID:23676271   PMID:24146773   PMID:24200680   PMID:24952961   PMID:25737280   PMID:26752201   PMID:26872059   PMID:27899360   PMID:30550785   PMID:31073041  
PMID:32325033   PMID:33601422   PMID:34321999   PMID:36759189  


Genomics

Comparative Map Data
Tsc22d1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391476,652,401 - 76,745,205 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1476,652,401 - 76,745,205 (+)EnsemblGRCm39 Ensembl
GRCm381476,414,961 - 76,507,765 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1476,414,961 - 76,507,765 (+)EnsemblGRCm38mm10GRCm38
MGSCv371476,815,628 - 76,907,573 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361475,149,976 - 75,241,916 (+)NCBIMGSCv36mm8
Celera1473,915,823 - 74,008,437 (+)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1440.44NCBI
TSC22D1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381344,432,143 - 44,577,344 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1344,432,143 - 44,577,147 (-)EnsemblGRCh38hg38GRCh38
GRCh371345,006,279 - 45,150,701 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361343,905,658 - 44,048,701 (-)NCBINCBI36Build 36hg18NCBI36
Celera1326,063,743 - 26,206,780 (-)NCBICelera
Cytogenetic Map13q14.11NCBI
HuRef1325,807,840 - 25,952,293 (-)NCBIHuRef
CHM1_11344,973,738 - 45,118,257 (-)NCBICHM1_1
T2T-CHM13v2.01343,651,902 - 43,797,110 (-)NCBIT2T-CHM13v2.0
Tsc22d1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81558,159,612 - 58,260,244 (+)NCBIGRCr8
mRatBN7.21551,750,489 - 51,850,958 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1551,749,510 - 51,850,958 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1555,889,187 - 55,989,358 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01557,007,507 - 57,107,680 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01553,826,931 - 53,926,796 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01558,554,358 - 58,658,156 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1558,554,374 - 58,658,153 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01562,249,572 - 62,348,601 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41557,404,929 - 57,502,817 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11557,515,360 - 57,518,594 (+)NCBI
Celera1551,368,663 - 51,469,040 (+)NCBICelera
Cytogenetic Map15q11NCBI
Tsc22d1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555182,321,226 - 2,450,812 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555182,322,566 - 2,451,519 (-)NCBIChiLan1.0ChiLan1.0
TSC22D1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21443,932,792 - 44,078,239 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11335,012,499 - 35,157,957 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01325,597,530 - 25,743,522 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13198,324,581 - 198,469,869 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3198,325,494 - 198,469,869 (+)Ensemblpanpan1.1panPan2
TSC22D1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1226,375,585 - 6,506,511 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl226,375,577 - 6,505,672 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha226,365,529 - 6,496,028 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0226,493,917 - 6,624,793 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl226,494,019 - 6,624,793 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1226,276,217 - 6,407,003 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0226,338,136 - 6,468,818 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0226,345,130 - 6,475,898 (+)NCBIUU_Cfam_GSD_1.0
Tsc22d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945154,776,673 - 154,890,895 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936791694,954 - 811,469 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936791697,244 - 811,463 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSC22D1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1122,518,795 - 22,634,407 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11122,518,792 - 22,634,411 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21122,821,681 - 22,853,358 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TSC22D1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1322,529,552 - 22,673,495 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605721,449,369 - 21,593,344 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tsc22d1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474810,420,659 - 10,592,135 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474810,420,584 - 10,589,366 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tsc22d1
3503 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3598
Count of miRNA genes:748
Interacting mature miRNAs:962
Transcripts:ENSMUST00000022587, ENSMUST00000048371, ENSMUST00000101618, ENSMUST00000110888, ENSMUST00000133224, ENSMUST00000134109, ENSMUST00000140251, ENSMUST00000142683, ENSMUST00000175655, ENSMUST00000175811, ENSMUST00000175984, ENSMUST00000176581, ENSMUST00000176886, ENSMUST00000177207, ENSMUST00000177333, ENSMUST00000177471
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
11039527Ccc2_mcolitis susceptibility in the Collaborative Cross 2 (mouse)145991861294138217Mouse
1300666Fembm2_mfemoral bone morphometry 2 (mouse)Not determined146239746096397680Mouse
14747006Mancz12_mmandible centroid size 12 (mouse)1470071977104071977Mouse
10054475Ossc3_mosteosarcoma susceptibility 3 (mouse)Not determined1470863768104863926Mouse
1300551Lprm3_mlymphoproliferation modifier 3 (mouse)Not determined1471221224105221344Mouse
1301844Pgia29_mproteoglycan induced arthritis 29 (mouse)Not determined1474352296108352384Mouse
1558819Ossc2_mosteosarcoma susceptibility 2 (mouse)Not determined1474394976108395093Mouse

Markers in Region
AW105905  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381476,507,414 - 76,507,544UniSTSGRCm38
MGSCv371476,907,221 - 76,907,351UniSTSGRCm37
Celera1474,008,085 - 74,008,215UniSTS
Cytogenetic Map14D3UniSTS
cM Map1442.0UniSTS
Whitehead/MRC_RH14868.04UniSTS
RH125004  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381476,507,549 - 76,507,654UniSTSGRCm38
GRCm38X91,960,406 - 91,960,511UniSTSGRCm38
MGSCv37X89,205,745 - 89,205,850UniSTSGRCm37
MGSCv371476,907,356 - 76,907,461UniSTSGRCm37
Celera1474,008,220 - 74,008,325UniSTS
CeleraX59,613,308 - 59,613,413UniSTS
Cytogenetic Map14D3UniSTS
cM Map1442.0UniSTS
Tsc22d1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14D3UniSTS
cM Map1442.0UniSTS
Egr5-rs  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381476,507,256 - 76,507,451UniSTSGRCm38
GRCm38X91,373,474 - 91,373,665UniSTSGRCm38
MGSCv37X88,618,813 - 88,619,004UniSTSGRCm37
MGSCv371476,907,063 - 76,907,258UniSTSGRCm37
Celera1474,007,927 - 74,008,122UniSTS
CeleraX59,613,509 - 59,613,700UniSTS
Cytogenetic Map14D3UniSTS
cM MapX33.0UniSTS
Tgfb1i4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381476,507,527 - 76,507,724UniSTSGRCm38
MGSCv371476,907,334 - 76,907,531UniSTSGRCm37
Celera1474,008,198 - 74,008,395UniSTS
Cytogenetic Map14D3UniSTS
cM Map1442.0UniSTS
Tsc22d1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14D3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001177751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001310646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001310647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_207652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006518799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006518800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006518801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006518803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001781104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001781105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003950835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003950836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003950837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004938375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004938376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_383154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_383156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC134842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC142266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF201285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI841546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW546174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY440762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY720238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX220910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY467708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X62940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000022587   ⟹   ENSMUSP00000022587
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1476,741,918 - 76,745,205 (+)Ensembl
GRCm38.p6 Ensembl1476,504,478 - 76,507,765 (+)Ensembl
RefSeq Acc Id: ENSMUST00000048371   ⟹   ENSMUSP00000044517
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1476,653,027 - 76,745,202 (+)Ensembl
GRCm38.p6 Ensembl1476,415,587 - 76,507,762 (+)Ensembl
RefSeq Acc Id: ENSMUST00000101618   ⟹   ENSMUSP00000099140
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1476,725,876 - 76,744,610 (+)Ensembl
GRCm38.p6 Ensembl1476,488,436 - 76,507,170 (+)Ensembl
RefSeq Acc Id: ENSMUST00000110888   ⟹   ENSMUSP00000106513
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1476,652,401 - 76,745,202 (+)Ensembl
GRCm38.p6 Ensembl1476,414,961 - 76,507,762 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133224   ⟹   ENSMUSP00000135561
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1476,742,538 - 76,744,442 (+)Ensembl
GRCm38.p6 Ensembl1476,505,098 - 76,507,002 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134109   ⟹   ENSMUSP00000135146
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1476,741,970 - 76,743,177 (+)Ensembl
GRCm38.p6 Ensembl1476,504,530 - 76,505,737 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140251   ⟹   ENSMUSP00000135806
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1476,714,357 - 76,744,370 (+)Ensembl
GRCm38.p6 Ensembl1476,476,917 - 76,506,930 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142683   ⟹   ENSMUSP00000135493
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1476,725,199 - 76,744,438 (+)Ensembl
GRCm38.p6 Ensembl1476,487,759 - 76,506,998 (+)Ensembl
RefSeq Acc Id: ENSMUST00000175655
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1476,676,373 - 76,677,822 (+)Ensembl
GRCm38.p6 Ensembl1476,438,933 - 76,440,382 (+)Ensembl
RefSeq Acc Id: ENSMUST00000175811
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1476,675,206 - 76,677,822 (+)Ensembl
GRCm38.p6 Ensembl1476,437,766 - 76,440,382 (+)Ensembl
RefSeq Acc Id: ENSMUST00000175984   ⟹   ENSMUSP00000135307
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1476,656,091 - 76,677,780 (+)Ensembl
GRCm38.p6 Ensembl1476,418,651 - 76,440,340 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176581   ⟹   ENSMUSP00000135789
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1476,656,088 - 76,676,439 (+)Ensembl
GRCm38.p6 Ensembl1476,418,648 - 76,438,999 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176886   ⟹   ENSMUSP00000135202
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1476,655,794 - 76,679,068 (+)Ensembl
GRCm38.p6 Ensembl1476,418,354 - 76,441,628 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177207   ⟹   ENSMUSP00000135296
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1476,741,654 - 76,745,203 (+)Ensembl
GRCm38.p6 Ensembl1476,504,214 - 76,507,763 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177333
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1476,653,554 - 76,654,083 (+)Ensembl
GRCm38.p6 Ensembl1476,416,114 - 76,416,643 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177471   ⟹   ENSMUSP00000134792
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1476,656,268 - 76,677,852 (+)Ensembl
GRCm38.p6 Ensembl1476,418,828 - 76,440,412 (+)Ensembl
RefSeq Acc Id: NM_001177751   ⟹   NP_001171222
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391476,725,876 - 76,745,205 (+)NCBI
GRCm381476,488,436 - 76,507,765 (+)NCBI
MGSCv371476,815,628 - 76,907,573 (+)RGD
Celera1473,915,823 - 74,008,437 (+)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001310646   ⟹   NP_001297575
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391476,652,401 - 76,745,205 (+)NCBI
GRCm381476,414,961 - 76,507,765 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001310647   ⟹   NP_001297576
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391476,741,666 - 76,745,205 (+)NCBI
GRCm381476,504,226 - 76,507,765 (+)NCBI
Sequence:
RefSeq Acc Id: NM_009366   ⟹   NP_033392
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391476,741,950 - 76,745,205 (+)NCBI
GRCm381476,504,510 - 76,507,765 (+)NCBI
MGSCv371476,815,628 - 76,907,573 (+)RGD
Celera1473,915,823 - 74,008,437 (+)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_207652   ⟹   NP_997535
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391476,653,261 - 76,745,205 (+)NCBI
GRCm381476,415,821 - 76,507,765 (+)NCBI
MGSCv371476,815,628 - 76,907,573 (+)RGD
Celera1473,915,823 - 74,008,437 (+)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006518799   ⟹   XP_006518862
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391476,653,071 - 76,679,060 (+)NCBI
GRCm381476,415,631 - 76,441,620 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006518800   ⟹   XP_006518863
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391476,653,071 - 76,679,060 (+)NCBI
GRCm381476,415,631 - 76,441,620 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006518801   ⟹   XP_006518864
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391476,653,071 - 76,679,060 (+)NCBI
GRCm381476,415,631 - 76,441,620 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006518803   ⟹   XP_006518866
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391476,653,071 - 76,745,203 (+)NCBI
GRCm381476,415,631 - 76,507,763 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017315942   ⟹   XP_017171431
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391476,653,071 - 76,745,203 (+)NCBI
GRCm381476,415,631 - 76,507,763 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017315943   ⟹   XP_017171432
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391476,653,065 - 76,745,203 (+)NCBI
GRCm381476,415,625 - 76,507,763 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017315945   ⟹   XP_017171434
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391476,653,071 - 76,679,060 (+)NCBI
GRCm381476,415,631 - 76,441,620 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036158535   ⟹   XP_036014428
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391476,653,071 - 76,679,060 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001781104
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391476,653,071 - 76,679,060 (+)NCBI
GRCm381476,415,631 - 76,441,620 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001781105
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391476,653,071 - 76,679,060 (+)NCBI
GRCm381476,415,631 - 76,441,620 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003950835
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391476,653,071 - 76,679,060 (+)NCBI
GRCm381476,415,631 - 76,441,620 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003950836
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391476,653,071 - 76,679,060 (+)NCBI
GRCm381476,415,631 - 76,441,620 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003950837
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391476,653,071 - 76,679,060 (+)NCBI
GRCm381476,415,631 - 76,441,620 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004938375
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391476,653,071 - 76,679,060 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004938376
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391476,652,445 - 76,679,060 (+)NCBI
Sequence:
RefSeq Acc Id: XR_383154
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391476,653,071 - 76,679,060 (+)NCBI
GRCm381476,415,631 - 76,441,620 (+)NCBI
Sequence:
RefSeq Acc Id: XR_383156
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391476,653,071 - 76,679,060 (+)NCBI
GRCm381476,415,631 - 76,441,620 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001171222 (Get FASTA)   NCBI Sequence Viewer  
  NP_001297575 (Get FASTA)   NCBI Sequence Viewer  
  NP_001297576 (Get FASTA)   NCBI Sequence Viewer  
  NP_033392 (Get FASTA)   NCBI Sequence Viewer  
  NP_997535 (Get FASTA)   NCBI Sequence Viewer  
  XP_006518862 (Get FASTA)   NCBI Sequence Viewer  
  XP_006518863 (Get FASTA)   NCBI Sequence Viewer  
  XP_006518864 (Get FASTA)   NCBI Sequence Viewer  
  XP_006518866 (Get FASTA)   NCBI Sequence Viewer  
  XP_017171431 (Get FASTA)   NCBI Sequence Viewer  
  XP_017171432 (Get FASTA)   NCBI Sequence Viewer  
  XP_017171434 (Get FASTA)   NCBI Sequence Viewer  
  XP_036014428 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG41218 (Get FASTA)   NCBI Sequence Viewer  
  AAH58660 (Get FASTA)   NCBI Sequence Viewer  
  BAD32600 (Get FASTA)   NCBI Sequence Viewer  
  BAE22470 (Get FASTA)   NCBI Sequence Viewer  
  BAE22473 (Get FASTA)   NCBI Sequence Viewer  
  BAE22560 (Get FASTA)   NCBI Sequence Viewer  
  BAE22878 (Get FASTA)   NCBI Sequence Viewer  
  BAE26295 (Get FASTA)   NCBI Sequence Viewer  
  BAE27628 (Get FASTA)   NCBI Sequence Viewer  
  BAE28650 (Get FASTA)   NCBI Sequence Viewer  
  CAA44712 (Get FASTA)   NCBI Sequence Viewer  
  EDL35807 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000022587
  ENSMUSP00000022587.10
  ENSMUSP00000044517
  ENSMUSP00000044517.9
  ENSMUSP00000099140
  ENSMUSP00000099140.3
  ENSMUSP00000106513
  ENSMUSP00000106513.2
  ENSMUSP00000134792.2
  ENSMUSP00000135146.2
  ENSMUSP00000135202.2
  ENSMUSP00000135296
  ENSMUSP00000135296.2
  ENSMUSP00000135307.2
  ENSMUSP00000135493.2
  ENSMUSP00000135561.2
  ENSMUSP00000135789.2
  ENSMUSP00000135806.2
GenBank Protein P62500 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_997535   ⟸   NM_207652
- Peptide Label: isoform 1
- UniProtKB: Q9EQN4 (UniProtKB/Swiss-Prot),   Q6PDK1 (UniProtKB/Swiss-Prot),   Q69Z44 (UniProtKB/Swiss-Prot),   Q00992 (UniProtKB/Swiss-Prot),   P62500 (UniProtKB/Swiss-Prot),   E9QLZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_033392   ⟸   NM_009366
- Peptide Label: isoform 2
- UniProtKB: Q3UXU0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171222   ⟸   NM_001177751
- Peptide Label: isoform 3
- UniProtKB: D3YW86 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006518866   ⟸   XM_006518803
- Peptide Label: isoform X6
- UniProtKB: Q9EQN4 (UniProtKB/Swiss-Prot),   Q6PDK1 (UniProtKB/Swiss-Prot),   Q69Z44 (UniProtKB/Swiss-Prot),   P62500 (UniProtKB/Swiss-Prot),   Q00992 (UniProtKB/Swiss-Prot),   D3Z0V7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006518862   ⟸   XM_006518799
- Peptide Label: isoform X1
- UniProtKB: Q9EQN4 (UniProtKB/Swiss-Prot),   Q6PDK1 (UniProtKB/Swiss-Prot),   Q69Z44 (UniProtKB/Swiss-Prot),   P62500 (UniProtKB/Swiss-Prot),   Q00992 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006518864   ⟸   XM_006518801
- Peptide Label: isoform X4
- UniProtKB: Q9EQN4 (UniProtKB/Swiss-Prot),   Q6PDK1 (UniProtKB/Swiss-Prot),   Q69Z44 (UniProtKB/Swiss-Prot),   P62500 (UniProtKB/Swiss-Prot),   Q00992 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006518863   ⟸   XM_006518800
- Peptide Label: isoform X3
- UniProtKB: Q9EQN4 (UniProtKB/Swiss-Prot),   Q6PDK1 (UniProtKB/Swiss-Prot),   Q69Z44 (UniProtKB/Swiss-Prot),   P62500 (UniProtKB/Swiss-Prot),   Q00992 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017171432   ⟸   XM_017315943
- Peptide Label: isoform X2
- UniProtKB: Q9EQN4 (UniProtKB/Swiss-Prot),   Q6PDK1 (UniProtKB/Swiss-Prot),   Q69Z44 (UniProtKB/Swiss-Prot),   P62500 (UniProtKB/Swiss-Prot),   Q00992 (UniProtKB/Swiss-Prot),   E9QLZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001297575   ⟸   NM_001310646
- Peptide Label: isoform 4
- UniProtKB: Q9EQN4 (UniProtKB/Swiss-Prot),   Q6PDK1 (UniProtKB/Swiss-Prot),   Q69Z44 (UniProtKB/Swiss-Prot),   P62500 (UniProtKB/Swiss-Prot),   Q00992 (UniProtKB/Swiss-Prot),   D3Z0V7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017171434   ⟸   XM_017315945
- Peptide Label: isoform X5
- UniProtKB: Q9EQN4 (UniProtKB/Swiss-Prot),   Q6PDK1 (UniProtKB/Swiss-Prot),   Q69Z44 (UniProtKB/Swiss-Prot),   P62500 (UniProtKB/Swiss-Prot),   Q00992 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017171431   ⟸   XM_017315942
- Peptide Label: isoform X2
- UniProtKB: Q9EQN4 (UniProtKB/Swiss-Prot),   Q6PDK1 (UniProtKB/Swiss-Prot),   Q69Z44 (UniProtKB/Swiss-Prot),   P62500 (UniProtKB/Swiss-Prot),   Q00992 (UniProtKB/Swiss-Prot),   E9QLZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001297576   ⟸   NM_001310647
- Peptide Label: isoform 5
- UniProtKB: H3BLI9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000106513   ⟸   ENSMUST00000110888
RefSeq Acc Id: ENSMUSP00000135296   ⟸   ENSMUST00000177207
RefSeq Acc Id: ENSMUSP00000134792   ⟸   ENSMUST00000177471
RefSeq Acc Id: ENSMUSP00000135561   ⟸   ENSMUST00000133224
RefSeq Acc Id: ENSMUSP00000044517   ⟸   ENSMUST00000048371
RefSeq Acc Id: ENSMUSP00000099140   ⟸   ENSMUST00000101618
RefSeq Acc Id: ENSMUSP00000022587   ⟸   ENSMUST00000022587
RefSeq Acc Id: ENSMUSP00000135806   ⟸   ENSMUST00000140251
RefSeq Acc Id: ENSMUSP00000135146   ⟸   ENSMUST00000134109
RefSeq Acc Id: ENSMUSP00000135202   ⟸   ENSMUST00000176886
RefSeq Acc Id: ENSMUSP00000135789   ⟸   ENSMUST00000176581
RefSeq Acc Id: ENSMUSP00000135493   ⟸   ENSMUST00000142683
RefSeq Acc Id: ENSMUSP00000135307   ⟸   ENSMUST00000175984
RefSeq Acc Id: XP_036014428   ⟸   XM_036158535
- Peptide Label: isoform X7
- UniProtKB: Q9EQN4 (UniProtKB/Swiss-Prot),   Q6PDK1 (UniProtKB/Swiss-Prot),   Q69Z44 (UniProtKB/Swiss-Prot),   P62500 (UniProtKB/Swiss-Prot),   Q00992 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62500-F1-model_v2 AlphaFold P62500 1-1077 view protein structure

Promoters
RGD ID:8683022
Promoter ID:EPDNEW_M19542
Type:initiation region
Name:Tsc22d1_4
Description:Mus musculus TSC22 domain family, member 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19543  EPDNEW_M19544  EPDNEW_M19545  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381476,414,993 - 76,415,053EPDNEW
RGD ID:8683024
Promoter ID:EPDNEW_M19543
Type:single initiation site
Name:Tsc22d1_2
Description:Mus musculus TSC22 domain family, member 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19542  EPDNEW_M19544  EPDNEW_M19545  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381476,415,738 - 76,415,798EPDNEW
RGD ID:8683026
Promoter ID:EPDNEW_M19544
Type:multiple initiation site
Name:Tsc22d1_3
Description:Mus musculus TSC22 domain family, member 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19542  EPDNEW_M19543  EPDNEW_M19545  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381476,488,562 - 76,488,622EPDNEW
RGD ID:8683028
Promoter ID:EPDNEW_M19545
Type:initiation region
Name:Tsc22d1_1
Description:Mus musculus TSC22 domain family, member 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19542  EPDNEW_M19543  EPDNEW_M19544  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381476,504,514 - 76,504,574EPDNEW
RGD ID:6825191
Promoter ID:MM_KWN:17500
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000048371,   ENSMUST00000110888,   UC007URH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361476,813,936 - 76,818,562 (+)MPROMDB
RGD ID:6825502
Promoter ID:MM_KWN:17503
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:UC007URJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361476,887,761 - 76,888,261 (+)MPROMDB
RGD ID:6825501
Promoter ID:MM_KWN:17504
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000100376,   OTTMUST00000064451,   OTTMUST00000064455,   OTTMUST00000064476,   OTTMUST00000064477
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361476,903,456 - 76,904,887 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109127 AgrOrtholog
Ensembl Genes ENSMUSG00000022010 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000022587 ENTREZGENE
  ENSMUST00000022587.10 UniProtKB/Swiss-Prot
  ENSMUST00000048371 ENTREZGENE
  ENSMUST00000048371.15 UniProtKB/TrEMBL
  ENSMUST00000101618 ENTREZGENE
  ENSMUST00000101618.9 UniProtKB/TrEMBL
  ENSMUST00000110888 ENTREZGENE
  ENSMUST00000110888.8 UniProtKB/TrEMBL
  ENSMUST00000133224.2 UniProtKB/TrEMBL
  ENSMUST00000134109.2 UniProtKB/TrEMBL
  ENSMUST00000140251.9 UniProtKB/TrEMBL
  ENSMUST00000142683.8 UniProtKB/TrEMBL
  ENSMUST00000175984.2 UniProtKB/TrEMBL
  ENSMUST00000176581.2 UniProtKB/TrEMBL
  ENSMUST00000176886.2 UniProtKB/TrEMBL
  ENSMUST00000177207 ENTREZGENE
  ENSMUST00000177207.2 UniProtKB/TrEMBL
  ENSMUST00000177471.2 UniProtKB/TrEMBL
Gene3D-CATH Single helix bin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro TSC-22_Dip_Bun UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TSC22/BUN_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:21807 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:109127 ENTREZGENE
NCBI Gene 21807 ENTREZGENE
PANTHER TSC22 UniProtKB/TrEMBL
  TSC22 DOMAIN FAMILY PROTEIN 1 UniProtKB/Swiss-Prot
  TSC22 DOMAIN FAMILY PROTEIN 1 UniProtKB/Swiss-Prot
  TSC22 DOMAIN FAMILY PROTEIN 1 UniProtKB/TrEMBL
  TSC22 DOMAIN FAMILY PROTEIN 1 UniProtKB/TrEMBL
  TSC22 DOMAIN FAMILY PROTEIN 1 UniProtKB/TrEMBL
Pfam TSC22 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tsc22d1 PhenoGen
PROSITE TSC22 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Delta-sleep-inducing peptide immunoreactive peptide UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3YW86 ENTREZGENE, UniProtKB/TrEMBL
  D3Z0V7 ENTREZGENE, UniProtKB/TrEMBL
  E9QLZ1 ENTREZGENE, UniProtKB/TrEMBL
  H3BJ00_MOUSE UniProtKB/TrEMBL
  H3BJV9_MOUSE UniProtKB/TrEMBL
  H3BK07_MOUSE UniProtKB/TrEMBL
  H3BK98_MOUSE UniProtKB/TrEMBL
  H3BLH4_MOUSE UniProtKB/TrEMBL
  H3BLI9 ENTREZGENE, UniProtKB/TrEMBL
  P62500 ENTREZGENE
  Q00992 ENTREZGENE
  Q3UWN6_MOUSE UniProtKB/TrEMBL
  Q3UXU0 ENTREZGENE, UniProtKB/TrEMBL
  Q69Z44 ENTREZGENE
  Q6PDK1 ENTREZGENE
  Q9EQN4 ENTREZGENE
  T22D1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q00992 UniProtKB/Swiss-Prot
  Q69Z44 UniProtKB/Swiss-Prot
  Q6PDK1 UniProtKB/Swiss-Prot
  Q9EQN4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-01 Tsc22d1  TSC22 domain family, member 1  Gm19597  predicted gene, 19597  Data merged from RGD:5140822 737654 PROVISIONAL