Tmem42 (transmembrane protein 42)

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Gene: Tmem42 (transmembrane protein 42) Mus musculus

Analyze

Symbol:

Tmem42

Name:

transmembrane protein 42

RGD ID:

1615900

MGI Page

MGI

Description:

Predicted to localize to integral component of membrane. Orthologous to human TMEM42 (transmembrane protein 42); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

0610027O18Rik; 4933429E06Rik; AV003444; D9Ertd662; D9Ertd662e; MGC29956

RGD Orthologs

Human

Rat

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMEM42 (transmembrane protein 42)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Tmem42 (transmembrane protein 42)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Pan paniscus (bonobo/pygmy chimpanzee):	TMEM42 (transmembrane protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMEM42 (transmembrane protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmem42 (transmembrane protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMEM42 (transmembrane protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	TMEM42 (transmembrane protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tmem42 (transmembrane protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Tmem42 (transmembrane protein 42)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	TMEM42 (transmembrane protein 42)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Caenorhabditis elegans (roundworm):	F40F8.3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|TreeFam)
Drosophila melanogaster (fruit fly):	CG42495	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER)
Danio rerio (zebrafish):	tmem42a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|ZFIN)

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	122,850,072 - 122,852,556 (+)	NCBI	GRCm39		mm39
GRCm38	9	123,021,007 - 123,023,491 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	123,021,326 - 123,023,705 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	122,930,444 - 122,932,609 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	122,870,024 - 122,872,181 (+)	NCBI			mm8
Celera	9	123,474,978 - 123,477,288 (+)	NCBI		Celera
Cytogenetic Map	9	F4	NCBI
cM Map	9	73.52	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (EXP)

1,2-dimethylhydrazine (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

2-methylcholine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

5-aza-2'-deoxycytidine (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

benzo[a]pyrene (EXP,ISO)

benzo[b]fluoranthene (EXP)

bisphenol A (ISO)

cadmium sulfate (EXP)

carbon nanotube (EXP)

chlordecone (EXP)

chrysene (EXP)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dibutyl phthalate (ISO)

disulfiram (ISO)

dorsomorphin (ISO)

folic acid (EXP)

glafenine (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

lead(0) (ISO)

lead(2+) (ISO)

maneb (EXP)

menadione (ISO)

methyl methanesulfonate (ISO)

paraquat (EXP)

phenylmercury acetate (ISO)

pyridaben (EXP)

SB 431542 (ISO)

sodium arsenite (ISO)

tetraphene (EXP)

triphenyl phosphate (ISO)

tunicamycin (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

integral component of membrane (IEA)

membrane (IEA)

Molecular Function

molecular_function (ND)

protein binding (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal bone mineralization (IEA)

abnormal circulating insulin level (IEA)

decreased circulating glycerol level (IEA)

increased bone mineral content (IEA)

increased bone mineral density (IEA)

References

References - curated


1.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:10725249	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:16141072	PMID:16141073	PMID:21677750

Genomics

Comparative Map Data

Tmem42
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	122,850,072 - 122,852,556 (+)	NCBI	GRCm39		mm39
GRCm38	9	123,021,007 - 123,023,491 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	123,021,326 - 123,023,705 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	122,930,444 - 122,932,609 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	122,870,024 - 122,872,181 (+)	NCBI			mm8
Celera	9	123,474,978 - 123,477,288 (+)	NCBI		Celera
Cytogenetic Map	9	F4	NCBI
cM Map	9	73.52	NCBI

TMEM42
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	3	44,861,904 - 44,865,670 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	3	44,861,912 - 44,865,664 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	3	44,903,408 - 44,907,156 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	44,878,412 - 44,882,160 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	3	44,878,411 - 44,882,156	NCBI
Celera	3	44,841,374 - 44,845,122 (+)	NCBI
Cytogenetic Map	3	p21.31	NCBI
HuRef	3	44,947,268 - 44,951,016 (+)	NCBI		HuRef
CHM1_1	3	44,853,413 - 44,857,171 (+)	NCBI		CHM1_1

Tmem42
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	8	132,105,965 - 132,108,462 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	132,105,443 - 132,108,462 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	131,260,785 - 131,263,282 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	127,767,070 - 127,769,567 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	8	127,786,495 - 127,789,190 (+)	NCBI
Celera	8	121,789,143 - 121,791,640 (+)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

TMEM42
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	3	45,818,006 - 45,830,210 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	45,818,081 - 45,821,264 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	3	44,763,025 - 44,766,852 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

TMEM42
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	20	43,447,894 - 43,451,751 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	20	43,446,963 - 43,451,241 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Tmem42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936695	853,246 - 857,485 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM42
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	28,045,397 - 28,054,920 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	28,045,370 - 28,054,628 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	30,938,202 - 30,956,826 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TMEM42
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	6,334,659 - 6,338,493 (+)	NCBI
ChlSab1.1 Ensembl	22	6,334,700 - 6,338,592 (+)	Ensembl

Tmem42
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624730	75,622,212 - 75,625,426 (-)	NCBI

Position Markers

AV003444

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	9	123,023,319 - 123,023,461	UniSTS	GRCm38
MGSCv37	9	122,932,437 - 122,932,579	UniSTS	GRCm37
Celera	9	123,477,116 - 123,477,258	UniSTS
Cytogenetic Map	9	F4	UniSTS
cM Map	9	72.0	UniSTS
Whitehead/MRC_RH	9	1211.65	UniSTS

UniSTS:236296

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	9	123,019,963 - 123,020,167	UniSTS	GRCm38
MGSCv37	9	122,929,081 - 122,929,285	UniSTS	GRCm37
Celera	9	123,473,615 - 123,473,819	UniSTS
Cytogenetic Map	9	F4	UniSTS
cM Map	9	72.0	UniSTS

AU015427

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	9	123,019,931 - 123,020,051	UniSTS	GRCm38
MGSCv37	9	122,929,049 - 122,929,169	UniSTS	GRCm37
Celera	9	123,473,583 - 123,473,703	UniSTS
Cytogenetic Map	9	F4	UniSTS
cM Map	9	72.0	UniSTS
cM Map	9	72.0	UniSTS
cM Map	9	72.0	UniSTS
Whitehead/MRC_RH	9	1212.06	UniSTS

AU015427

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	9	123,019,910 - 123,020,153	UniSTS	GRCm38
MGSCv37	9	122,929,028 - 122,929,271	UniSTS	GRCm37
Celera	9	123,473,562 - 123,473,805	UniSTS
Cytogenetic Map	9	F4	UniSTS
cM Map	9	72.0	UniSTS
Whitehead/MRC_RH	9	1212.15	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10412242	Alpq8_m	alcohol preference QTL 8 (mouse)			Not determined		9	89284925	123284925	Mouse
1301649	Psl1_m	promotion susceptibility QTL 1 (mouse)			Not determined		9	89412277	123412396	Mouse
18182932	Metl3_m	metabolite locus 3, N-acetylglutamate (mouse)					9	89563342	123563342	Mouse
12910770	Splic1_m	spleen iron content 1 (mouse)					9	91413879	124595110	Mouse
12910772	Lvic6_m	liver iron content 6 (mouse)					9	91413879	124595110	Mouse
12910773	Splic3_m	spleen iron content 3 (mouse)					9	91413879	124595110	Mouse
1558767	Skmw11_m	skeletal muscle weight 11 (mouse)			Not determined		9	91641084	124595110	Mouse
13463474	Hbbcq5_m	hemoglobin concentration QTL 5 (mouse)					9	91641084	124595110	Mouse
13463475	Hctq7_m	hematocrit QTL 7 (mouse)					9	91641084	124595110	Mouse
13463477	Rbc9_m	red blood cell count 9 (mouse)					9	91641084	124595110	Mouse
13463478	Mchq18_m	mean corpuscular hemoglobin QTL 18 (mouse)					9	91641084	124595110	Mouse
13463480	Mchcq2_m	mean corpuscular hemoglobin concentration QTL 2 (mouse)					9	91641084	124595110	Mouse
12904937	Edlmmq9_m	extensor digitorum longus muscle mass QTL 9 (mouse)					9	91683173	124595110	Mouse
12904947	Tammq7_m	tibialis anterior muscle mass QTL 7 (mouse)					9	91683173	124595110	Mouse
12904961	Gmmq7_m	gastrocnemius muscle mass QTL 7 (mouse)					9	91683173	124595110	Mouse
1302001	Bdln5_m	body length 5 (mouse)			Not determined		9	93762590	124595110	Mouse
1301484	Bwq6_m	body weight (mouse)			Not determined		9	93762590	124595110	Mouse
14746992	Manh67_m	mandible shape 67 (mouse)					9	94036768	124595110	Mouse
11537364	Cnes5_m	C. neoformans susceptibility locus 5 (mouse)					9	96917590	124595110	Mouse
1301297	Lcho1_m	liver cholesterol 1 (mouse)			Not determined		9	101060861	124595110	Mouse
1357627	Tgq2_m	triglyceride QTL 2 (mouse)			Not determined		9	102000187	124595110	Mouse
1357648	Obq18_m	obesity QTL 18 (mouse)			Not determined		9	102000187	124595110	Mouse
1301789	Pbwg4_m	postnatal body weight growth 4 (mouse)			Not determined		9	103289445	124595110	Mouse
10412290	Pvacm1l_m	plasma vascular cell adhesion molecule 1 levels (mouse)			Not determined		9	103289445	124595110	Mouse
12879896	Berr3_m	berghei resistance locus 3 (mouse)					9	103289445	124595110	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	173
Count of miRNA genes:	148
Interacting mature miRNAs:	165
Transcripts:	ENSMUST00000084733
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001164823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_025339	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006512205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006512206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AA939506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC133650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK002688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK012820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC049583	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BX515032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000084733 ⟹ ENSMUSP00000081784

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	123,021,326 - 123,023,487 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000213514 ⟹ ENSMUSP00000149571

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	123,021,375 - 123,023,705 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000214077

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	123,021,418 - 123,022,120 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000214785 ⟹ ENSMUSP00000149811

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	123,021,418 - 123,022,249 (+)	Ensembl

RefSeq Acc Id:

NM_001164823 ⟹ NP_001158295

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	122,850,391 - 122,852,556 (+)	NCBI
GRCm38	9	123,021,326 - 123,023,491 (+)	NCBI
MGSCv37	9	122,930,444 - 122,932,609 (+)	RGD
Celera	9	123,474,978 - 123,477,288 (+)	RGD
cM Map	9		ENTREZGENE

Sequence:

show sequence

ACGGCGGGTGGCGGCGTGCGTGGCAGTCGGCCGTGGCGGGCGCAGCGGGCCTCATGGCGGCCGG
TCCGCAGTCCTCGGGTGCCGCCGTGTCTGCGGCCGCTTACCCTGACTCACCCGTGGAGTTACCC
GCTCGCCTACAGAAAGGCGCGATGCGGCGCCGCTTCTGGGGCGTGTTCAACTGTCTGTGCGCCG
GGGCGTTCGGGGCTCTGGCCGCCGCCGCCGCCAAGCTGGCCTTCGGGAGCCAGGTCAATATTGG
CTTATGTGTCTTAGGCATCGTTGCCATGGCAAGCGCCAATTCTCTGATGTGGACCTTCTTTAGC
CGGGGCCTCAGTTTCTCTATGTCTTCAGCCATTGCATCTGTCACAGTGACTTTCTCGAACATAC
TTTGCTCGGTGGTCCGTGATGCCTATGAATCCACAGCAAAAGAAGGGAACGTGGGCTAATAAAC
ACTTGTAAGCTAAAGCTAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_025339 ⟹ NP_079615

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	122,850,391 - 122,852,556 (+)	NCBI
GRCm38	9	123,021,326 - 123,023,491 (+)	NCBI
MGSCv37	9	122,930,444 - 122,932,609 (+)	RGD
Celera	9	123,474,978 - 123,477,288 (+)	RGD
cM Map	9		ENTREZGENE

Sequence:

show sequence

ACGGCGGGTGGCGGCGTGCGTGGCAGTCGGCCGTGGCGGGCGCAGCGGGCCTCATGGCGGCCGG
TCCGCAGTCCTCGGGTGCCGCCGTGTCTGCGGCCGCTTACCCTGACTCACCCGTGGAGTTACCC
GCTCGCCTACAGAAAGGCGCGATGCGGCGCCGCTTCTGGGGCGTGTTCAACTGTCTGTGCGCCG
GGGCGTTCGGGGCTCTGGCCGCCGCCGCCGCCAAGCTGGCCTTCGGGAGCCAGGTCAATATTGG
CTTATGTGTCTTAGGCATCGTTGCCATGGCAAGCGCCAATTCTCTGATGTGGACCTTCTTTAGC
CGGGGCCTCAGTTTCTCTATGTCTTCAGCCATTGCATCTGTCACAGTGACTTTCTCGAACATAC
TTTGCTCGGCCATCTTAGGCTACCTGCTGTATGGAGAGTGCCAGGAGATCTTATGGTGGGGAGG
GGTGTTCCTCATCCTCTGTGGGCTCACCCTGATCCACAGGAAGTTTCCACCCACCTGGAAGGAG
AGCAAGGAGCAGTGAGGCCAGTCGGTGGATAGACCAGACCCACTGTAAAGAGAACCATGATACC
CAGCCAAGGGTTGACAAGTTGGGCTGCTTCCAGGGCGGCCTGGGAGTGCAGCCCTTAAGTGTCA
GCCACATGGAGATGGTGGACCAGCCACTGGCCTCTGACCTCCTCACAGCCTGGAAAGTTAAAGC
ATTAGCTCCTGTAAGGGGAAGCTAACCACCACAGTATGAGGCCCAAGTCCTTCAGTGTTGGTAT
AGTGCCTTGATTCTTGTGCACCAGGGAATATTGGAAGACTCTGTGATCATGGGTTACACAGCAA
CATGGCAGGTACCTGAAAAAAACAAAAAACATGTGATTAGAATCCTGCCCTTCATGTACCCCAG
CACTGGCAGTTGGCTTTCTGAAAAAACAAACAAACAAACAACAAAAAAAAAACAACTTGATGTG
TCATGCCTCAGGTGGTCCGTGATGCCTATGAATCCACAGCAAAAGAAGGGAACGTGGGCTAATA
AACACTTGTAAGCTAAAGCTAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006512205 ⟹ XP_006512268

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	122,850,137 - 122,852,556 (+)	NCBI
GRCm38	9	123,021,070 - 123,023,491 (+)	NCBI

Sequence:

show sequence

AGTTCACGTCAGCAGATTCCTCTCTCACAGTAGGTACCTCTCGGTAGCACGCTTCCTTCAGTGG
CGCACGGTCCTCGCTACCGGATTCCCATCCCCCAGGCTCGGCTCGGCTCGGCTCCGGACTCCAC
TGCAGCAGATTCGCCTCACTCGCCTGGCTCCGCCCTAGCCGGGCTCACGGCGGGTGGCGGCGTG
CGTGGCAGTCGGCCGTGGCGGGCGCAGCGGGCCTCATGGCGGCCGGTCCGCAGTCCTCGGGTGC
CGCCGTGTCTGCGGCCGCTTACCCTGACTCACCCGTGGAGTTACCCGCTCGCCTACAGAAAGGC
GCGATGCGGCGCCGCTTCTGGGGCGTGTTCAACTGTCTGTGCGCCGGGGCGTTCGGGGCTCTGG
CCGCCGCCGCCGCCAAGCTGGCCTTCGGGAGCCAGGTCAATATTGGCTTATGTGTCTTAGGCAT
CGTTGCCATGGCAAGCGCCAATTCTCTGATGTGGACCTTCTTTAGCCGGGGCCTCAGTTTCTCT
ATGTCTTCAGCCATTGCATCTGTCACAGTGACTTTCTCGAACATACTTTGCTCGGCCATCTTAG
GCTACCTGCTGTATGGAGAGTGCCAGGAGATCTTATGGTGGGGAGGGGTGTTCCTCATCCTCTG
TGGGCTCACCCTGATCCACAGGAAGTTTCCACCCACCTGGAAGGAGAGCAAGGAGCAGTGAGGC
CAGTCGGTGGATAGACCAGACCCACTGTAAAGAGAACCATGATACCCAGCCAAGGGTTGACAAG
TTGGGCTGCTTCCAGGGCGGCCTGGGAGTGCAGCCCTTAAGTGTCAGCCACATGGAGATGGTGG
ACCAGCCACTGGCCTCTGACCTCCTCACAGCCTGGAAAGTTAAAGCATTAGCTCCTGTAAGGGG
AAGCTAACCACCACAGTATGAGGCCCAAGTCCTTCAGTGTTGGTATAGTGCCTTGATTCTTGTG
CACCAGGGAATATTGGAAGACTCTGTGATCATGGGTTACACAGCAACATGGCAGGTACCTGAAA
AAAACAAAAAACATGTGATTAGAATCCTGCCCTTCATGTACCCCAGCACTGGCAGTTGGCTTTC
TGAAAAAACAAACAAACAAACAACAAAAAAAAAACAACTTGATGTGTCATGCCTCAGGTGGTCC
GTGATGCCTATGAATCCACAGCAAAAGAAGGGAACGTGGGCTAATAAACACTTGTAAGCTAAAG
CTA

hide sequence

RefSeq Acc Id:

XM_006512206 ⟹ XP_006512269

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	122,850,072 - 122,852,556 (+)	NCBI
GRCm38	9	123,021,007 - 123,023,491 (+)	NCBI

Sequence:

show sequence

CTTTCAGAAACAAGGTTACTTCCGCCGCAGGTTCTCCTCGGAGATAAACTCCCCTCCTCCCCAA
GTTCACGTCAGCAGATTCCTCTCTCACAGCTCGGCTCGGCTCGGCTCCGGACTCCACTGCAGCA
GATTCGCCTCACTCGCCTGGCTCCGCCCTAGCCGGGCTCACGGCGGGTGGCGGCGTGCGTGGCA
GTCGGCCGTGGCGGGCGCAGCGGGCCTCATGGCGGCCGGTCCGCAGTCCTCGGGTGCCGCCGTG
TCTGCGGCCGCTTACCCTGACTCACCCGTGGAGTTACCCGCTCGCCTACAGAAAGGCGCGATGC
GGCGCCGCTTCTGGGGCGTGTTCAACTGTCTGTGCGCCGGGGCGTTCGGGGCTCTGGCCGCCGC
CGCCGCCAAGCTGGCCTTCGGGAGCCAGGTCAATATTGGCTTATGTGTCTTAGGCATCGTTGCC
ATGGCAAGCGCCAATTCTCTGATGTGGACCTTCTTTAGCCGGGGCCTCAGTTTCTCTATGTCTT
CAGCCATTGCATCTGTCACAGTGACTTTCTCGAACATACTTTGCTCGGCCATCTTAGGCTACCT
GCTGTATGGAGAGTGCCAGGAGATCTTATGGTGGGGAGGGGTGTTCCTCATCCTCTGTGGGCTC
ACCCTGATCCACAGGAAGTTTCCACCCACCTGGAAGGAGAGCAAGGAGCAGTGAGGCCAGTCGG
TGGATAGACCAGACCCACTGTAAAGAGAACCATGATACCCAGCCAAGGGTTGACAAGTTGGGCT
GCTTCCAGGGCGGCCTGGGAGTGCAGCCCTTAAGTGTCAGCCACATGGAGATGGTGGACCAGCC
ACTGGCCTCTGACCTCCTCACAGCCTGGAAAGTTAAAGCATTAGCTCCTGTAAGGGGAAGCTAA
CCACCACAGTATGAGGCCCAAGTCCTTCAGTGTTGGTATAGTGCCTTGATTCTTGTGCACCAGG
GAATATTGGAAGACTCTGTGATCATGGGTTACACAGCAACATGGCAGGTACCTGAAAAAAACAA
AAAACATGTGATTAGAATCCTGCCCTTCATGTACCCCAGCACTGGCAGTTGGCTTTCTGAAAAA
ACAAACAAACAAACAACAAAAAAAAAACAACTTGATGTGTCATGCCTCAGGTGGTCCGTGATGC
CTATGAATCCACAGCAAAAGAAGGGAACGTGGGCTAATAAACACTTGTAAGCTAAAGCTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001158295	(Get FASTA)	NCBI Sequence Viewer
	NP_079615	(Get FASTA)	NCBI Sequence Viewer
	XP_006512268	(Get FASTA)	NCBI Sequence Viewer
	XP_006512269	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH49583	(Get FASTA)	NCBI Sequence Viewer
	BAB22284	(Get FASTA)	NCBI Sequence Viewer
	BAB28493	(Get FASTA)	NCBI Sequence Viewer
	EDL09082	(Get FASTA)	NCBI Sequence Viewer
	EDL09083	(Get FASTA)	NCBI Sequence Viewer
	EDL09084	(Get FASTA)	NCBI Sequence Viewer
	EDL09085	(Get FASTA)	NCBI Sequence Viewer
	Q9CR22	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_079615 ⟸ NM_025339
- Peptide Label:	isoform 1
- UniProtKB:	Q9CR22 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAAGPQSSGAAVSAAAYPDSPVELPARLQKGAMRRRFWGVFNCLCAGAFGALAAAAAKLAFGSQ VNIGLCVLGIVAMASANSLMWTFFSRGLSFSMSSAIASVTVTFSNILCSAILGYLLYGECQEIL WWGGVFLILCGLTLIHRKFPPTWKESKEQ hide sequence

RefSeq Acc Id:	NP_001158295 ⟸ NM_001164823
- Peptide Label:	isoform 2
- UniProtKB:	Q9CR22 (UniProtKB/Swiss-Prot), A0A1L1SRQ7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAGPQSSGAAVSAAAYPDSPVELPARLQKGAMRRRFWGVFNCLCAGAFGALAAAAAKLAFGSQ VNIGLCVLGIVAMASANSLMWTFFSRGLSFSMSSAIASVTVTFSNILCSVVRDAYESTAKEGNV G hide sequence

RefSeq Acc Id:	XP_006512269 ⟸ XM_006512206
- Peptide Label:	isoform X1
- UniProtKB:	Q9CR22 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAAGPQSSGAAVSAAAYPDSPVELPARLQKGAMRRRFWGVFNCLCAGAFGALAAAAAKLAFGSQ VNIGLCVLGIVAMASANSLMWTFFSRGLSFSMSSAIASVTVTFSNILCSAILGYLLYGECQEIL WWGGVFLILCGLTLIHRKFPPTWKESKEQ hide sequence

RefSeq Acc Id:	XP_006512268 ⟸ XM_006512205
- Peptide Label:	isoform X1
- UniProtKB:	Q9CR22 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAAGPQSSGAAVSAAAYPDSPVELPARLQKGAMRRRFWGVFNCLCAGAFGALAAAAAKLAFGSQ VNIGLCVLGIVAMASANSLMWTFFSRGLSFSMSSAIASVTVTFSNILCSAILGYLLYGECQEIL WWGGVFLILCGLTLIHRKFPPTWKESKEQ hide sequence

RefSeq Acc Id:

ENSMUSP00000081784 ⟸ ENSMUST00000084733

RefSeq Acc Id:

ENSMUSP00000149571 ⟸ ENSMUST00000213514

RefSeq Acc Id:

ENSMUSP00000149811 ⟸ ENSMUST00000214785

Promoters

RGD ID:

6845259

Promoter ID:

MM_KWN:59258

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day2, 3T3L1_Day3, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour

Transcripts:

NM_001164823, NM_025339

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	9	122,929,951 - 122,930,602 (+)	MPROMDB

RGD ID:

8671322

Promoter ID:

EPDNEW_M13691

Type:

multiple initiation site

Name:

Tmem42_1

Description:

Mus musculus transmembrane protein 42 , transcript variant 1,mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	9	123,021,350 - 123,021,410	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1277176	AgrOrtholog
Ensembl Genes	ENSMUSG00000066233	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000081784	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000149571	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUSP00000149811	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000084733	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000213514	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUST00000214785	UniProtKB/TrEMBL
InterPro	TMEM42	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:66079	UniProtKB/Swiss-Prot
MGD	MGI:1277176	ENTREZGENE
NCBI Gene	66079	ENTREZGENE
PANTHER	PTHR31965	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Tmem42	PhenoGen
UniGene	Mm.482265	ENTREZGENE
UniProt	A0A1L1SRQ7	ENTREZGENE, UniProtKB/TrEMBL
	A0A1L1SS99_MOUSE	UniProtKB/TrEMBL
	Q9CR22	ENTREZGENE, UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)