2810021J22Rik (RIKEN cDNA 2810021J22 gene) - Rat Genome Database

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Gene: 2810021J22Rik (RIKEN cDNA 2810021J22 gene) Mus musculus
Analyze
Symbol: 2810021J22Rik
Name: RIKEN cDNA 2810021J22 gene
RGD ID: 1615865
MGI Page MGI
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in early conceptus; inner cell mass; and oocyte.
Type: protein-coding
RefSeq Status: PREDICTED
Previously known as: AI449137; hypothetical protein LOC69944; RP23-419P16.9; uncharacterized protein LOC69944
RGD Orthologs
Human
Bonobo
Dog
Squirrel
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391158,751,310 - 58,775,164 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1158,758,042 - 58,774,114 (+)EnsemblGRCm39 Ensembl
GRCm381158,860,484 - 58,884,529 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1158,867,216 - 58,883,288 (+)EnsemblGRCm38mm10GRCm38
MGSCv371158,680,742 - 58,697,840 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361158,683,435 - 58,700,533 (+)NCBIMGSCv36mm8
Celera1163,632,838 - 63,648,335 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1136.34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15618518   PMID:16141072   PMID:16141073   PMID:20059953   PMID:20412781   PMID:21267068  
PMID:21873635   PMID:24200680   PMID:24316575   PMID:27899360  


Genomics

Comparative Map Data
2810021J22Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391158,751,310 - 58,775,164 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1158,758,042 - 58,774,114 (+)EnsemblGRCm39 Ensembl
GRCm381158,860,484 - 58,884,529 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1158,867,216 - 58,883,288 (+)EnsemblGRCm38mm10GRCm38
MGSCv371158,680,742 - 58,697,840 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361158,683,435 - 58,700,533 (+)NCBIMGSCv36mm8
Celera1163,632,838 - 63,648,335 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1136.34NCBI
ZNF33B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381042,574,169 - 42,638,570 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1042,574,185 - 42,638,570 (-)EnsemblGRCh38hg38GRCh38
GRCh371043,069,617 - 43,134,018 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361042,404,561 - 42,453,998 (-)NCBINCBI36Build 36hg18NCBI36
Build 341042,404,560 - 42,453,998NCBI
Celera1039,087,983 - 39,137,375 (-)NCBICelera
Cytogenetic Map10q11.21NCBI
HuRef1039,611,330 - 39,660,708 (-)NCBIHuRef
CHM1_11043,124,049 - 43,173,404 (-)NCBICHM1_1
T2T-CHM13v2.01043,451,702 - 43,516,055 (-)NCBIT2T-CHM13v2.0
ZNF33B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2855,303,315 - 55,350,911 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11055,306,797 - 55,356,246 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01039,561,900 - 39,611,542 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11042,749,141 - 42,796,883 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1042,751,304 - 42,795,182 (-)Ensemblpanpan1.1panPan2
LOC119871425
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha4392,520 - 442,191 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.04374,623 - 424,414 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.14368,838 - 418,477 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.04467,458 - 516,521 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.04729,123 - 778,828 (+)NCBIUU_Cfam_GSD_1.0
Znf33b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721384,295,778 - 84,328,921 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366172,454,633 - 2,488,189 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF33B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11460,884,774 - 60,905,188 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21465,658,244 - 65,742,310 (-)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in 2810021J22Rik
59 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:691
Count of miRNA genes:465
Interacting mature miRNAs:540
Transcripts:ENSMUST00000073924, ENSMUST00000132570
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5406567063319522Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115406567067078411Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
13513917Heal54_mwound healing/ regeneration 54 (mouse)115787291759879610Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115408094165103841Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse

Markers in Region
AI449137  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381158,882,936 - 58,883,173UniSTSGRCm38
MGSCv371158,696,438 - 58,696,675UniSTSGRCm37
Cytogenetic Map11B1.3UniSTS
Whitehead/MRC_RH11769.98UniSTS
UniSTS:236587  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381158,883,067 - 58,883,278UniSTSGRCm38
MGSCv371158,696,569 - 58,696,780UniSTSGRCm37
Cytogenetic Map11B1.3UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000073924   ⟹   ENSMUSP00000073579
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1158,758,042 - 58,774,114 (+)Ensembl
GRCm38.p6 Ensembl1158,867,216 - 58,883,288 (+)Ensembl
Ensembl Acc Id: ENSMUST00000132570   ⟹   ENSMUSP00000120692
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1158,758,093 - 58,768,830 (+)Ensembl
GRCm38.p6 Ensembl1158,867,267 - 58,878,004 (+)Ensembl
RefSeq Acc Id: NM_172403   ⟹   NP_765991
RefSeq Status: PREDICTED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391158,758,066 - 58,775,164 (+)NCBI
GRCm381158,867,240 - 58,884,338 (+)NCBI
MGSCv371158,680,742 - 58,697,840 (+)RGD
Celera1163,632,838 - 63,648,335 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030246292   ⟹   XP_030102152
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391158,751,310 - 58,775,164 (+)NCBI
GRCm381158,860,484 - 58,884,338 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246294   ⟹   XP_030102154
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391158,751,310 - 58,774,090 (+)NCBI
GRCm381158,860,484 - 58,883,204 (+)NCBI
Sequence:
RefSeq Acc Id: NP_765991   ⟸   NM_172403
- UniProtKB: Q8BIB6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030102152   ⟸   XM_030246292
- Peptide Label: isoform X1
- UniProtKB: Q8BIB6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030102154   ⟸   XM_030246294
- Peptide Label: isoform X2
Ensembl Acc Id: ENSMUSP00000073579   ⟸   ENSMUST00000073924
Ensembl Acc Id: ENSMUSP00000120692   ⟸   ENSMUST00000132570
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BIB6-F1-model_v2 AlphaFold Q8BIB6 1-539 view protein structure

Promoters
RGD ID:6820175
Promoter ID:MM_KWN:7599
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000063164,   ENSMUST00000093064,   OTTMUST00000012783
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361158,680,499 - 58,680,999 (+)MPROMDB
RGD ID:8674770
Promoter ID:EPDNEW_M15414
Type:initiation region
Name:2810021J22Rik_1
Description:Mus musculus RIKEN cDNA 2810021J22 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381158,867,256 - 58,867,316EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917194 AgrOrtholog
Ensembl Genes ENSMUSG00000020491 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000073924 ENTREZGENE
  ENSMUST00000073924.10 UniProtKB/TrEMBL
  ENSMUST00000132570.2 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  Krueppel_C2H2_ZnF UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report mmu:69944 UniProtKB/TrEMBL
MGD MGI:1917194 ENTREZGENE
NCBI Gene 69944 ENTREZGENE
PANTHER KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 939 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen 2810021J22Rik PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt Q5NC62_MOUSE UniProtKB/TrEMBL
  Q8BIB6 ENTREZGENE, UniProtKB/TrEMBL