Samt4 (spermatogenesis associated multipass transmembrane protein 4) - Rat Genome Database

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Gene: Samt4 (spermatogenesis associated multipass transmembrane protein 4) Mus musculus
Analyze
Symbol: Samt4
Name: spermatogenesis associated multipass transmembrane protein 4
RGD ID: 1615816
MGI Page MGI
Description: Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be active in bicellular tight junction and plasma membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4930542N07Rik; hypothetical protein LOC75185; RP23-228N14.4; uncharacterized protein LOC75185
RGD Orthologs
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X153,264,998 - 153,267,678 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX153,264,998 - 153,267,678 (+)EnsemblGRCm39 Ensembl
GRCm38X154,482,002 - 154,484,682 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX154,482,002 - 154,484,682 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X150,916,545 - 150,919,225 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X149,822,718 - 149,825,398 (+)NCBIMGSCv36mm8
CeleraX137,815,293 - 137,817,973 (+)NCBICelera
Cytogenetic MapXF3NCBI
cM MapX72.38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (ISO)
Cuprizon  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21873635   PMID:22075566  


Genomics

Comparative Map Data
Samt4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X153,264,998 - 153,267,678 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX153,264,998 - 153,267,678 (+)EnsemblGRCm39 Ensembl
GRCm38X154,482,002 - 154,484,682 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX154,482,002 - 154,484,682 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X150,916,545 - 150,919,225 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X149,822,718 - 149,825,398 (+)NCBIMGSCv36mm8
CeleraX137,815,293 - 137,817,973 (+)NCBICelera
Cytogenetic MapXF3NCBI
cM MapX72.38NCBI
Samt4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X26,173,282 - 26,176,055 (-)NCBIGRCr8
mRatBN7.2X22,676,830 - 22,679,573 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX22,676,825 - 22,679,569 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X24,362,079 - 24,364,320 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX24,362,076 - 24,364,322 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X24,776,551 - 24,782,744 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X43,197,794 - 43,199,857 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX23,056,998 - 23,059,239 (-)NCBICelera
Cytogenetic MapXq13NCBI

Variants

.
Variants in Samt4
45 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:59
Count of miRNA genes:59
Interacting mature miRNAs:59
Transcripts:ENSMUST00000026029
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX120993165160213038Mouse
10412164Cmv2_mcytomegalovirus resistance 2 (mouse)Not determinedX125685149159685269Mouse
13824981Svwq2_mseminal vesicle weight QTL 2 (mouse)X128900749153782996Mouse
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX133540040165298595Mouse
10401118Pgia39_mproteoglycan induced arthritis 39 (mouse)Not determinedX144474380169476592Mouse
1302000Pgia25_mproteoglycan induced arthritis 2 (mouse)Not determinedX144474380169476592Mouse
12738421Lfibq17_mliver fibrosis QTL 17 (mouse)X148148453164945064Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000026029   ⟹   ENSMUSP00000026029
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX153,264,998 - 153,267,678 (+)Ensembl
GRCm38.p6 EnsemblX154,482,002 - 154,484,682 (+)Ensembl
RefSeq Acc Id: NM_029199   ⟹   NP_083475
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X153,264,998 - 153,267,678 (+)NCBI
GRCm38X154,482,002 - 154,484,682 (+)ENTREZGENE
MGSCv37X150,916,545 - 150,919,225 (+)RGD
CeleraX137,815,293 - 137,817,973 (+)RGD
cM MapX ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_083475 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAB30084 (Get FASTA)   NCBI Sequence Viewer  
  EDL40861 (Get FASTA)   NCBI Sequence Viewer  
  EDL40862 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000026029
  ENSMUSP00000026029.2
Reference Protein Sequences
RefSeq Acc Id: NP_083475   ⟸   NM_029199
- UniProtKB: Q9D4X6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000026029   ⟸   ENSMUST00000026029

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D4X6-F1-model_v2 AlphaFold Q9D4X6 1-233 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1922435 AgrOrtholog
Ensembl Genes ENSMUSG00000025051 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000026029 ENTREZGENE
  ENSMUST00000026029.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro Claudin UniProtKB/TrEMBL
KEGG Report mmu:75185 UniProtKB/TrEMBL
MGD MGI:1922435 ENTREZGENE
NCBI Gene 75185 ENTREZGENE
PANTHER PTHR12002 UniProtKB/TrEMBL
  SPERMATOGENESIS-ASSOCIATED MULTIPASS TRANSMEMBRANE PROTEIN 4 UniProtKB/TrEMBL
PhenoGen Samt4 PhenoGen
UniProt Q9D4X6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-05-15 Samt4  spermatogenesis associated multipass transmembrane protein 4  4930542N07Rik  RIKEN cDNA 4930542N07 gene  Symbol and/or name change 5135510 APPROVED