Spaca7b (sperm acrosome associated 7B) - Rat Genome Database

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Pathways
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Gene: Spaca7b (sperm acrosome associated 7B) Mus musculus
Analyze
No known orthologs.
Symbol: Spaca7b
Name: sperm acrosome associated 7B
RGD ID: 1615812
MGI Page MGI
Description: INTERACTS WITH epoxiconazole
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700016D06Rik; GC14; hypothetical protein LOC76413; uncharacterized protein LOC76413
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39811,705,478 - 11,728,749 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl811,704,924 - 11,751,063 (-)EnsemblGRCm39 Ensembl
GRCm38811,655,478 - 11,678,749 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl811,654,924 - 11,701,063 (-)EnsemblGRCm38mm10GRCm38
MGSCv37811,654,921 - 11,678,750 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36811,654,893 - 11,678,722 (-)NCBIMGSCv36mm8
Celera811,830,117 - 11,853,837 (-)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map85.73NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12634303   PMID:14610273   PMID:16141072   PMID:16141073   PMID:21677750   PMID:31146259  


Genomics

Variants

.
Variants in Spaca7b
782 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:184
Count of miRNA genes:160
Interacting mature miRNAs:176
Transcripts:ENSMUST00000033906
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13432571Scvg1_msubcutaneous vessel growth QTL 1 (mouse)8124751082Mouse
11533914Mts5_mmammary tumor susceptibility 5 (mouse)8130447432Mouse
4140978Nilac5_mnicotine induced locomotor activity 5 (mouse)Not determined8131773288Mouse
27226756Femd2_mfemur midshaft diameter 2, 5 week (mouse)8495000035067154Mouse
1357525Pnhdlc3_mplasma non-HDL cholesterol 3 (mouse)Not determined8721249923753815Mouse
1301532Scc8_mcolon tumor susceptibility 8 (mouse)Not determined8721249935110107Mouse
1300906Ap8q_malcohol preference 8 QTL (mouse)Not determined8798418941984342Mouse
10412209Cypr7_mcytokine production 7 (mouse)Not determined8810320142103372Mouse
1301929Eae24_msusceptibility to experimental allergic encephalomyelitis 24 (mouse)Not determined8810320142103372Mouse
1301128Sluc20_msusceptibility to lung cancer 20 (mouse)Not determined8810320142103372Mouse
14700791Mencq6_mmeniscus calcification QTL 6 (mouse)81102200012200000Mouse
14697703Stsl1_mSalmonella typhimurium susceptibility locus 1 (mouse)81135000017050016Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000033906   ⟹   ENSMUSP00000033906
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl811,704,924 - 11,728,750 (-)Ensembl
GRCm38.p6 Ensembl811,654,924 - 11,678,750 (-)Ensembl
RefSeq Acc Id: ENSMUST00000190741   ⟹   ENSMUSP00000140232
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl811,705,479 - 11,751,063 (-)Ensembl
GRCm38.p6 Ensembl811,655,479 - 11,701,063 (-)Ensembl
RefSeq Acc Id: ENSMUST00000190787
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl811,705,478 - 11,710,735 (-)Ensembl
GRCm38.p6 Ensembl811,655,478 - 11,660,735 (-)Ensembl
RefSeq Acc Id: ENSMUST00000191350   ⟹   ENSMUSP00000139631
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl811,705,480 - 11,712,604 (-)Ensembl
GRCm38.p6 Ensembl811,655,480 - 11,662,604 (-)Ensembl
RefSeq Acc Id: NM_024271   ⟹   NP_077233
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39811,705,478 - 11,728,749 (-)NCBI
GRCm38811,655,478 - 11,678,749 (-)NCBI
MGSCv37811,654,921 - 11,678,750 (-)RGD
Celera811,830,117 - 11,853,837 (-)RGD
cM Map8 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_077233   ⟸   NM_024271
- Peptide Label: precursor
- UniProtKB: Q9DAA5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000139631   ⟸   ENSMUST00000191350
RefSeq Acc Id: ENSMUSP00000033906   ⟸   ENSMUST00000033906
RefSeq Acc Id: ENSMUSP00000140232   ⟸   ENSMUST00000190741

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9DAA5-F1-model_v2 AlphaFold Q9DAA5 1-166 view protein structure

Promoters
RGD ID:8666437
Promoter ID:EPDNEW_M11250
Type:initiation region
Name:1700016D06Rik_1
Description:Mus musculus RIKEN cDNA 1700016D06 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38811,678,736 - 11,678,796EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000031509 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000033906 ENTREZGENE
  ENSMUST00000033906.11 UniProtKB/TrEMBL
  ENSMUST00000190741.2 UniProtKB/TrEMBL
  ENSMUST00000191350.2 UniProtKB/TrEMBL
InterPro SPACA7 UniProtKB/TrEMBL
KEGG Report mmu:76413 UniProtKB/TrEMBL
MGD MGI:1923663 ENTREZGENE
NCBI Gene 76413 ENTREZGENE
Pfam SPACA7 UniProtKB/TrEMBL
PhenoGen Spaca7b PhenoGen
UniProt A0A087WP52_MOUSE UniProtKB/TrEMBL
  A0A087WQK3_MOUSE UniProtKB/TrEMBL
  Q9DAA5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-13 Spaca7b  sperm acrosome associated 7B  1700016D06Rik  RIKEN cDNA 1700016D06 gene  Symbol and/or name updated 27372883 PROVISIONAL