Krtap10-4 (keratin associated protein 10-4) - Rat Genome Database

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Gene: Krtap10-4 (keratin associated protein 10-4) Mus musculus
Analyze
No known orthologs.
Symbol: Krtap10-4
Name: keratin associated protein 10-4
RGD ID: 1615792
MGI Page MGI
Description: Predicted to enable identical protein binding activity. Orthologous to several human genes including KRTAP10-3 (keratin associated protein 10-3).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 675238; A030009A09Rik; AA589524; MGC144318; MGC144319
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391077,662,003 - 77,662,904 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1077,661,949 - 77,662,929 (-)EnsemblGRCm39 Ensembl
GRCm381077,826,169 - 77,827,070 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1077,826,115 - 77,827,095 (-)EnsemblGRCm38mm10GRCm38
MGSCv371077,288,914 - 77,289,815 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361077,213,266 - 77,214,099 (-)NCBIMGSCv36mm8
Celera1078,871,642 - 78,872,543 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12040188   PMID:12466851   PMID:12466855   PMID:12477932   PMID:16141072   PMID:16141073   PMID:18721477  


Genomics

Variants

.
Variants in Krtap10-4
30 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:188
Count of miRNA genes:181
Interacting mature miRNAs:185
Transcripts:ENSMUST00000092369
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4672040382491121Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104933801283338157Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined104984818783848412Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined104984818783848412Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined104984818783848412Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined104984822283848397Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined104984822283848397Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105109149085091639Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105109149085091639Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105149340082491121Mouse
14746991Manh68_mmandible shape 68 (mouse)105228049786280497Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105851696992517096Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106549093899491121Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106549093899491121Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106549093899491121Mouse
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106684818792258673Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073506901107507047Mouse
4142107Obrq12_mobesity resistance QTL 12 (mouse)Not determined7398721682491121Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse

Markers in Region
AA589524  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371077,316,328 - 77,316,416UniSTSGRCm37
Celera1078,899,304 - 78,899,392UniSTS
Cytogenetic Map10C1UniSTS
cM Map10 UniSTS
Whitehead/MRC_RH10878.6UniSTS
UniSTS:493141  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381077,826,169 - 77,827,070UniSTSGRCm38
MGSCv371077,288,914 - 77,289,815UniSTSGRCm37
Celera1078,871,642 - 78,872,543UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000092369   ⟹   ENSMUSP00000139550
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1077,661,949 - 77,662,929 (-)Ensembl
GRCm38.p6 Ensembl1077,826,115 - 77,827,095 (-)Ensembl
RefSeq Acc Id: NM_001135991   ⟹   NP_001129463
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391077,662,003 - 77,662,904 (-)NCBI
GRCm381077,826,169 - 77,827,070 (-)ENTREZGENE
MGSCv371077,288,914 - 77,289,815 (-)RGD
Celera1078,871,642 - 78,872,543 (-)RGD
cM Map10 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001129463 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI15500 (Get FASTA)   NCBI Sequence Viewer  
  AAI15501 (Get FASTA)   NCBI Sequence Viewer  
  EDL31777 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000139550
  ENSMUSP00000139550.2
Reference Protein Sequences
RefSeq Acc Id: NP_001129463   ⟸   NM_001135991
- UniProtKB: Q08EG8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000139550   ⟸   ENSMUST00000092369

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q08EG8-F1-model_v2 AlphaFold Q08EG8 1-221 view protein structure

Promoters
RGD ID:8672448
Promoter ID:EPDNEW_M14255
Type:single initiation site
Name:Krtap10-4_1
Description:Mus musculus keratin associated protein 10-4 (Krtap10-4), mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381077,827,095 - 77,827,155EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1925013 AgrOrtholog
Ensembl Genes ENSMUSG00000069582 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000092369 ENTREZGENE
  ENSMUST00000092369.4 UniProtKB/TrEMBL
InterPro Keratin_B2 UniProtKB/TrEMBL
KEGG Report mmu:100191037 UniProtKB/TrEMBL
MGD MGI:1925013 ENTREZGENE
NCBI Gene 100191037 ENTREZGENE
PANTHER KERATIN-ASSOCIATED PROTEIN 10-6 UniProtKB/TrEMBL
  Keratin_B2 UniProtKB/TrEMBL
Pfam Keratin_B2_2 UniProtKB/TrEMBL
PhenoGen Krtap10-4 PhenoGen
UniProt Q08EG8 ENTREZGENE, UniProtKB/TrEMBL