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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Chemical and Drug Induced Liver Injury | | ISO | RGD:1316534 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:25231249 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Chemical and Drug Induced Liver Injury | | ISO | RGD:1316534 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:25231249 | |
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1. | Pipeline to import KEGG annotations from KEGG into RGD |
2. | RGD automated import pipeline for gene-chemical interactions |
PMID:8889548 | PMID:10349636 | PMID:11042159 | PMID:11076861 | PMID:11217851 | PMID:12466851 | PMID:12477932 | PMID:14610273 | PMID:14681479 | PMID:15489334 | PMID:15782199 | PMID:16141072 |
PMID:16141073 | PMID:21267068 | PMID:21873635 | PMID:31666509 | PMID:32325033 |
Xylb (Mus musculus - house mouse) |
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XYLB (Homo sapiens - human) |
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Xylb (Rattus norvegicus - Norway rat) |
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Xylb (Chinchilla lanigera - long-tailed chinchilla) |
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XYLB (Pan paniscus - bonobo/pygmy chimpanzee) |
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XYLB (Canis lupus familiaris - dog) |
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Xylb (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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XYLB (Sus scrofa - pig) |
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XYLB (Chlorocebus sabaeus - African green monkey) |
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Xylb (Heterocephalus glaber - naked mole-rat) |
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AI327421 |
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AI132223 |
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The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
RefSeq Transcripts | NM_001033209 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001199568 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001359699 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_030243939 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_030243940 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC128702 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AC166052 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK143476 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK164186 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK165440 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK165518 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK165759 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK167735 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK170197 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK180117 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC025442 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC026406 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC080743 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC138244 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC138247 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000039610 ⟹ ENSMUSP00000047254 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000213383 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000215305 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000215822 ⟹ ENSMUSP00000150659 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000216838 ⟹ ENSMUSP00000151179 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001033209 ⟹ NP_001028381 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001199568 ⟹ NP_001186497 | ||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001359699 ⟹ NP_001346628 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_030243939 ⟹ XP_030099799 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_030243940 ⟹ XP_030099800 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001028381 | (Get FASTA) | NCBI Sequence Viewer |
NP_001186497 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001346628 | (Get FASTA) | NCBI Sequence Viewer | |
XP_030099799 | (Get FASTA) | NCBI Sequence Viewer | |
XP_030099800 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH25442 | (Get FASTA) | NCBI Sequence Viewer |
AAH26406 | (Get FASTA) | NCBI Sequence Viewer | |
AAH80743 | (Get FASTA) | NCBI Sequence Viewer | |
AAI38245 | (Get FASTA) | NCBI Sequence Viewer | |
AAI38248 | (Get FASTA) | NCBI Sequence Viewer | |
BAE25393 | (Get FASTA) | NCBI Sequence Viewer | |
BAE37670 | (Get FASTA) | NCBI Sequence Viewer | |
BAE38188 | (Get FASTA) | NCBI Sequence Viewer | |
BAE38233 | (Get FASTA) | NCBI Sequence Viewer | |
BAE38368 | (Get FASTA) | NCBI Sequence Viewer | |
Q3TNA1 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001028381 ⟸ NM_001033209 |
- Peptide Label: | isoform 1 |
- UniProtKB: | Q3TNA1 (UniProtKB/Swiss-Prot), Q3TMS3 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | NP_001186497 ⟸ NM_001199568 |
- Peptide Label: | isoform 2 |
- UniProtKB: | Q3TNA1 (UniProtKB/Swiss-Prot), Q3TMS3 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | NP_001346628 ⟸ NM_001359699 |
- Peptide Label: | isoform 3 |
RefSeq Acc Id: | XP_030099799 ⟸ XM_030243939 |
- Peptide Label: | isoform X1 |
RefSeq Acc Id: | XP_030099800 ⟸ XM_030243940 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | ENSMUSP00000151179 ⟸ ENSMUST00000216838 |
RefSeq Acc Id: | ENSMUSP00000047254 ⟸ ENSMUST00000039610 |
RefSeq Acc Id: | ENSMUSP00000150659 ⟸ ENSMUST00000215822 |
RGD ID: | 6845336 | ||||||||
Promoter ID: | MM_KWN:59133 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | 3T3L1_Day0, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung | ||||||||
Transcripts: | ENSMUST00000039610, UC009SAU.1, UC009SAV.1 | ||||||||
Position: |
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RGD ID: | 6845340 | ||||||||
Promoter ID: | MM_KWN:59134 | ||||||||
Type: | Non-CpG | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | Kidney, Liver | ||||||||
Transcripts: | UC009SAW.1 | ||||||||
Position: |
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RGD ID: | 8671192 | ||||||||
Promoter ID: | EPDNEW_M13627 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Xylb_1 | ||||||||
Description: | Mus musculus xylulokinase homolog , transcript variant 3, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M13628 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 8671194 | ||||||||
Promoter ID: | EPDNEW_M13628 | ||||||||
Type: | single initiation site | ||||||||
Name: | Xylb_2 | ||||||||
Description: | Mus musculus xylulokinase homolog , transcript variant 3, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M13627 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:2142985 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000035769 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Protein | ENSMUSP00000047254 | ENTREZGENE, UniProtKB/Swiss-Prot |
ENSMUSP00000150659 | UniProtKB/TrEMBL | |
ENSMUSP00000151179 | UniProtKB/TrEMBL | |
Ensembl Transcript | ENSMUST00000039610 | ENTREZGENE, UniProtKB/Swiss-Prot |
ENSMUST00000213383 | ENTREZGENE | |
ENSMUST00000215822 | UniProtKB/TrEMBL | |
ENSMUST00000216838 | UniProtKB/TrEMBL | |
InterPro | ATPase_NBD | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Carb_kinase_FGGY | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Carb_kinase_FGGY_C | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Carb_kinase_FGGY_N | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
D-XK_euk | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | mmu:102448 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
MGD | MGI:2142985 | ENTREZGENE |
NCBI Gene | 102448 | ENTREZGENE |
Pfam | FGGY_C | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
FGGY_N | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Xylb | PhenoGen |
PIRSF | GlpK | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Superfamily-SCOP | SSF53067 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniGene | Mm.219497 | ENTREZGENE |
UniProt | A0A1L1SUA8_MOUSE | UniProtKB/TrEMBL |
Q3TMS3 | ENTREZGENE, UniProtKB/TrEMBL | |
Q3TNA1 | ENTREZGENE | |
Q66JV3_MOUSE | UniProtKB/TrEMBL | |
Q8R0U8_MOUSE | UniProtKB/TrEMBL | |
XYLB_MOUSE | UniProtKB/Swiss-Prot | |
UniProt Secondary | B2RR66 | UniProtKB/Swiss-Prot |
Q8R156 | UniProtKB/Swiss-Prot |