Foxp2 (forkhead box P2) - Rat Genome Database

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Gene: Foxp2 (forkhead box P2) Mus musculus
Analyze
Symbol: Foxp2
Name: forkhead box P2
RGD ID: 1615752
MGI Page MGI
Description: Exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and identical protein binding activity. Involved in several processes, including animal organ development; positive regulation of cell population proliferation; and righting reflex. Predicted to localize to nucleus. Is expressed in several structures, including alimentary system; brain; genitourinary system; musculoskeletal system; and respiratory system. Human ortholog(s) of this gene implicated in several diseases, including attention deficit hyperactivity disorder; autism spectrum disorder (multiple); communication disorder (multiple); dyslexia; and major depressive disorder. Orthologous to human FOXP2 (forkhead box P2); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 2,2',4,4',5,5'-hexachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2810043D05Rik; AI449000; CAG-16; D0Kis; D0Kist7; forkhead box protein P2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39614,901,348 - 15,441,976 (+)NCBIGRCm39mm39
GRCm39 Ensembl614,901,348 - 15,441,976 (+)Ensembl
GRCm38614,901,349 - 15,441,977 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl614,901,349 - 15,441,977 (+)EnsemblGRCm38mm10GRCm38
MGSCv37614,851,349 - 15,391,977 (+)NCBIGRCm37mm9NCBIm37
MGSCv36614,851,390 - 15,391,977 (+)NCBImm8
Celera614,991,559 - 15,532,353 (+)NCBICelera
Cytogenetic Map6A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1,3-dinitrobenzene  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
avobenzone  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium dichloride  (EXP)
carbamazepine  (ISO)
casticin  (EXP)
chlordecone  (ISO)
choline  (EXP)
clozapine  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
DDT  (ISO)
diazinon  (ISO)
dichloroacetic acid  (EXP)
dorsomorphin  (ISO)
Enterolactone  (ISO)
folic acid  (EXP,ISO)
formaldehyde  (ISO)
genistein  (EXP)
hydralazine  (ISO)
L-methionine  (EXP)
lead diacetate  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
melphalan  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
paracetamol  (ISO)
PCB138  (EXP)
phencyclidine  (EXP)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP,ISO)
silver atom  (ISO)
silver(0)  (ISO)
Stanolone benzoate  (ISO)
thimerosal  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
valproic acid  (EXP,ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal branching involved in lung morphogenesis  (IAGP)
abnormal cardiovascular system physiology  (IAGP)
abnormal cerebellar foliation  (IAGP)
abnormal cerebellar Purkinje cell layer  (IAGP)
abnormal cerebellum external granule cell layer morphology  (IAGP)
abnormal cerebellum morphology  (IAGP)
abnormal circulating mineral level  (IAGP)
abnormal dendrite morphology  (IAGP)
abnormal eating behavior  (IAGP)
abnormal energy homeostasis  (IAGP)
abnormal esophageal smooth muscle morphology  (IAGP)
abnormal esophagus development  (IAGP)
abnormal long term depression  (IAGP)
abnormal lung development  (IAGP)
abnormal motor capabilities/coordination/movement  (IAGP)
abnormal motor learning  (IAGP)
abnormal neurite morphology  (IAGP)
abnormal Purkinje cell dendrite morphology  (IAGP)
abnormal radial glial cell morphology  (IAGP)
abnormal reflex  (IAGP)
abnormal respiratory conducting tube morphology  (IAGP)
abnormal response to novel object  (IAGP)
abnormal righting response  (IAGP)
abnormal synaptic plasticity  (IAGP)
abnormal vocalization  (IAGP)
bradykinesia  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased brain size  (IAGP)
decreased dopamine level  (IAGP)
decreased embryo size  (IAGP)
decreased exploration in new environment  (IAGP)
decreased lean body mass  (IAGP)
decreased lung weight  (IAGP)
decreased mesenchymal cell proliferation involved in lung development  (IAGP)
decreased QRS amplitude  (IAGP)
decreased startle reflex  (IAGP)
decreased total fat pad weight  (IAGP)
decreased vocalization  (IAGP)
delayed ear emergence  (IAGP)
delayed eyelid opening  (IAGP)
dilated esophagus  (IAGP)
dilated respiratory conducting tubes  (IAGP)
embryonic lethality, complete penetrance  (IAGP)
embryonic lethality, incomplete penetrance  (IAGP)
enhanced paired-pulse facilitation  (IAGP)
hypoactivity  (IAGP)
impaired coordination  (IAGP)
impaired lung alveolus development  (IAGP)
impaired righting response  (IAGP)
increased CD4-positive, alpha beta T cell number  (IAGP)
increased CD8-positive, alpha-beta T cell number  (IAGP)
increased circulating ferritin level  (IAGP)
increased dopamine level  (IAGP)
increased pulmonary respiratory rate  (IAGP)
increased serotonin level  (IAGP)
lethality at weaning, complete penetrance  (IAGP)
overexpanded pulmonary alveoli  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
positive geotaxis  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
premature death  (IAGP)
reduced cerebellar foliation  (IAGP)
reduced long term depression  (IAGP)
slow postnatal weight gain  (IAGP)
small cerebellum  (IAGP)
small lung  (IAGP)
thin cerebellar molecular layer  (IAGP)
References

References - curated
1. Fatemi SH, etal., Schizophr Res. 2008 Feb;99(1-3):56-70. doi: 10.1016/j.schres.2007.11.018. Epub 2008 Jan 9.
2. Feuk L, etal., Am J Hum Genet. 2006 Nov;79(5):965-72. Epub 2006 Sep 27.
3. Gauthier J, etal., Am J Med Genet A. 2003 Apr 15;118A(2):172-5.
4. Gong X, etal., Am J Med Genet B Neuropsychiatr Genet. 2004 May 15;127B(1):113-6.
5. Lai CS, etal., Nature. 2001 Oct 4;413(6855):519-23.
6. Li H, etal., Brain Dev. 2005 Apr;27(3):207-10.
7. Li T, etal., World J Biol Psychiatry. 2013 Mar;14(2):146-50. doi: 10.3109/15622975.2011.615860. Epub 2012 Mar 9.
8. MacDermot KD, etal., Am J Hum Genet. 2005 Jun;76(6):1074-80. Epub 2005 Apr 22.
9. Marui T, etal., Neurosci Res. 2005 Sep;53(1):91-4.
10. OMIM Disease Annotation Pipeline
11. Park Y, etal., J Child Neurol. 2014 Dec;29(12):NP207-11. doi: 10.1177/0883073813511301. Epub 2013 Dec 18.
12. RGD automated import pipeline
13. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14. RGD automated import pipeline for gene-chemical interactions
15. Ribases M, etal., Psychiatr Genet. 2012 Aug;22(4):155-60. doi: 10.1097/YPG.0b013e328353957e.
16. Sanjuan J, etal., Psychiatr Genet. 2006 Apr;16(2):67-72.
17. Tolosa A, etal., BMC Med Genet. 2010 Jul 22;11:114. doi: 10.1186/1471-2350-11-114.
18. Vernes SC, etal., Eur J Hum Genet. 2009 Oct;17(10):1354-8. doi: 10.1038/ejhg.2009.43. Epub 2009 Apr 8.
19. Vernes SC, etal., Hum Mol Genet. 2006 Nov 1;15(21):3154-67. Epub 2006 Sep 19.
20. Wassink TH, etal., Am J Med Genet. 2002 Jul 8;114(5):566-9.
21. Wilcke A, etal., Eur J Hum Genet. 2012 Feb;20(2):224-9. doi: 10.1038/ejhg.2011.160. Epub 2011 Sep 7.
22. Zhao Y, etal., Psychiatry Clin Neurosci. 2010 Oct;64(5):565-73. doi: 10.1111/j.1440-1819.2010.02123.x.
Additional References at PubMed
PMID:9367917   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11358962   PMID:11959831   PMID:12192408   PMID:12466851   PMID:12477932   PMID:12524352   PMID:12687690  
PMID:12876151   PMID:14516685   PMID:14701752   PMID:14704420   PMID:14758363   PMID:15457338   PMID:15473967   PMID:15489334   PMID:15618518   PMID:15964824   PMID:15983371   PMID:16075367  
PMID:16141072   PMID:16141073   PMID:16157277   PMID:16284245   PMID:16376864   PMID:16387638   PMID:16602821   PMID:16680166   PMID:16919269   PMID:17035521   PMID:17428829   PMID:17507397  
PMID:17589506   PMID:17619227   PMID:17706960   PMID:17959791   PMID:18206388   PMID:18239190   PMID:18287060   PMID:18287559   PMID:18328704   PMID:18430631   PMID:18662545   PMID:18794345  
PMID:18940587   PMID:18940588   PMID:18997113   PMID:19008461   PMID:19029045   PMID:19030180   PMID:19135992   PMID:19136970   PMID:19150975   PMID:19304338   PMID:19334288   PMID:19386638  
PMID:19389366   PMID:19403657   PMID:19449303   PMID:19463901   PMID:19470613   PMID:19490899   PMID:19596273   PMID:19838179   PMID:19864579   PMID:20005822   PMID:20059953   PMID:20132318  
PMID:20181597   PMID:20185820   PMID:20364144   PMID:20412781   PMID:20484636   PMID:20507551   PMID:20553735   PMID:20579107   PMID:20619750   PMID:20620871   PMID:20823249   PMID:20825492  
PMID:20932939   PMID:21104742   PMID:21111790   PMID:21124801   PMID:21192082   PMID:21267068   PMID:21315259   PMID:21368052   PMID:21382368   PMID:21386911   PMID:21435555   PMID:21440680  
PMID:21471366   PMID:21491433   PMID:21508241   PMID:21666133   PMID:21765815   PMID:21862448   PMID:21873635   PMID:21876543   PMID:21935935   PMID:21962519   PMID:21985339   PMID:22017987  
PMID:22020803   PMID:22028030   PMID:22028625   PMID:22090513   PMID:22115757   PMID:22116031   PMID:22121026   PMID:22133810   PMID:22246438   PMID:22266795   PMID:22272290   PMID:22405202  
PMID:22412993   PMID:22479190   PMID:22522401   PMID:22542185   PMID:22573669   PMID:22696295   PMID:22821687   PMID:22874921   PMID:22879516   PMID:22884324   PMID:22935140   PMID:22988430  
PMID:22991445   PMID:23028652   PMID:23226954   PMID:23283338   PMID:23283686   PMID:23308235   PMID:23382203   PMID:23395374   PMID:23404109   PMID:23451260   PMID:23602712   PMID:23643363  
PMID:23684982   PMID:23727838   PMID:23816521   PMID:23895693   PMID:24115909   PMID:24184637   PMID:24453072   PMID:24453338   PMID:24607928   PMID:24726360   PMID:24832731   PMID:24857653  
PMID:24930700   PMID:24952961   PMID:25037921   PMID:25050931   PMID:25209608   PMID:25225386   PMID:25245017   PMID:25282615   PMID:25417164   PMID:25456121   PMID:25527076   PMID:25644653  
PMID:25802080   PMID:25804738   PMID:25843402   PMID:25888505   PMID:25975775   PMID:26021489   PMID:26071365   PMID:26138486   PMID:26163006   PMID:26235615   PMID:26245956   PMID:26250064  
PMID:26329601   PMID:26527010   PMID:26566793   PMID:26620267   PMID:26659141   PMID:26758845   PMID:26830346   PMID:26889967   PMID:26903504   PMID:26921474   PMID:26930384   PMID:26949184  
PMID:26969076   PMID:26980647   PMID:27009683   PMID:27210758   PMID:27282384   PMID:27321927   PMID:27341756   PMID:27383233   PMID:27384060   PMID:27595386   PMID:27664421   PMID:27798843  
PMID:27909010   PMID:27934886   PMID:28066179   PMID:28204507   PMID:28228269   PMID:28244870   PMID:28334242   PMID:28384713   PMID:28445456   PMID:28453519   PMID:28475893   PMID:28542916  
PMID:28584103   PMID:28591638   PMID:28671696   PMID:28768199   PMID:28838957   PMID:28921616   PMID:29127326   PMID:29138280   PMID:29255003   PMID:29311744   PMID:29343636   PMID:29343638  
PMID:29360985   PMID:29581187   PMID:29637443   PMID:29659575   PMID:29899142   PMID:29917235   PMID:30031127   PMID:30104377   PMID:30108312   PMID:30187194   PMID:30357341   PMID:30413696  
PMID:30449657   PMID:30456369   PMID:30470704   PMID:30478225   PMID:30487221   PMID:30529950   PMID:30626697   PMID:30635555   PMID:30668728   PMID:30697732   PMID:30808549   PMID:31099752  
PMID:31240265   PMID:31242446   PMID:31256239   PMID:31420539   PMID:31491374   PMID:31600191   PMID:31742552   PMID:31872525   PMID:32049024   PMID:32073401   PMID:32098764   PMID:32170006  
PMID:32187534   PMID:32238932   PMID:32561725   PMID:32621762   PMID:32675279   PMID:32780108   PMID:32868762   PMID:33020214   PMID:33055198   PMID:33073849   PMID:33137126   PMID:33238113  
PMID:33591268  


Genomics

Comparative Map Data
Foxp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39614,901,348 - 15,441,976 (+)NCBIGRCm39mm39
GRCm39 Ensembl614,901,348 - 15,441,976 (+)Ensembl
GRCm38614,901,349 - 15,441,977 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl614,901,349 - 15,441,977 (+)EnsemblGRCm38mm10GRCm38
MGSCv37614,851,349 - 15,391,977 (+)NCBIGRCm37mm9NCBIm37
MGSCv36614,851,390 - 15,391,977 (+)NCBImm8
Celera614,991,559 - 15,532,353 (+)NCBICelera
Cytogenetic Map6A1NCBI
FOXP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl7114,086,327 - 114,693,772 (+)EnsemblGRCh38hg38GRCh38
GRCh387114,086,327 - 114,693,765 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh377113,726,382 - 114,333,820 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367113,842,288 - 114,118,328 (+)NCBINCBI36hg18NCBI36
Build 347113,649,226 - 113,924,106NCBI
Celera7108,532,810 - 109,140,335 (+)NCBI
Cytogenetic Map7q31.1NCBI
HuRef7108,089,788 - 108,698,059 (+)NCBIHuRef
CHM1_17113,659,668 - 114,267,158 (+)NCBICHM1_1
CRA_TCAGchr7v27113,121,523 - 113,729,058 (+)NCBI
Foxp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2443,133,827 - 43,712,442 (+)NCBI
Rnor_6.0 Ensembl441,364,441 - 41,942,023 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0441,364,441 - 41,944,685 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0440,956,160 - 41,530,231 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4440,719,812 - 40,977,517 (+)NCBIRGSC3.4rn4RGSC3.4
Celera438,465,580 - 39,042,946 (+)NCBICelera
Cytogenetic Map4q21NCBI
Foxp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543220,334,237 - 20,589,352 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543220,205,369 - 20,589,608 (+)NCBIChiLan1.0ChiLan1.0
FOXP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17119,077,322 - 119,346,956 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7119,077,332 - 119,343,893 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v07106,040,118 - 106,648,741 (+)NCBIMhudiblu_PPA_v0panPan3
FOXP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11453,311,214 - 53,864,056 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1453,312,045 - 53,862,655 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1452,705,645 - 53,260,684 (+)NCBI
ROS_Cfam_1.01453,348,680 - 53,904,109 (+)NCBI
UMICH_Zoey_3.11453,380,738 - 53,934,984 (+)NCBI
UNSW_CanFamBas_1.01453,066,607 - 53,621,520 (+)NCBI
UU_Cfam_GSD_1.01453,439,813 - 53,995,147 (+)NCBI
Foxp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511842,028,555 - 42,570,609 (+)NCBI
SpeTri2.0NW_0049365894,120,162 - 4,661,258 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1831,336,931 - 31,888,899 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11831,335,102 - 31,890,523 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21833,665,884 - 33,729,395 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FOXP2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12182,799,147 - 83,392,568 (+)NCBI
ChlSab1.1 Ensembl2183,129,308 - 83,389,483 (+)Ensembl
Foxp2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248274,813,203 - 5,086,326 (-)NCBI

Position Markers
AI449000  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,439,185 - 15,439,325UniSTSGRCm38
MGSCv37615,389,185 - 15,389,325UniSTSGRCm37
Celera615,529,562 - 15,529,702UniSTS
Cytogenetic Map6A2UniSTS
Whitehead/MRC_RH6129.62UniSTS
D6Mit265  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,021,724 - 15,021,817UniSTSGRCm38
MGSCv37614,971,724 - 14,971,817UniSTSGRCm37
Celera615,111,460 - 15,111,553UniSTS
Cytogenetic Map6A2UniSTS
cM Map63.5UniSTS
Whitehead Genetic63.3UniSTS
D6Mit305.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,311,720 - 15,311,862UniSTSGRCm38
MGSCv37615,261,720 - 15,261,862UniSTSGRCm37
Celera615,402,228 - 15,402,370UniSTS
Cytogenetic Map6A2UniSTS
cM Map62.8UniSTS
cM Map6 UniSTS
Whitehead Genetic63.3UniSTS
Whitehead_YAC6 UniSTS
MTH1225  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,311,624 - 15,311,713UniSTSGRCm38
MGSCv37615,261,624 - 15,261,713UniSTSGRCm37
Celera615,402,132 - 15,402,221UniSTS
Cytogenetic Map6A2UniSTS
cM Map62.8UniSTS
Whitehead Genetic63.3UniSTS
BE110309  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,440,990 - 15,441,171UniSTSGRCm38
MGSCv37615,390,990 - 15,391,171UniSTSGRCm37
Celera615,531,366 - 15,531,547UniSTS
Cytogenetic Map6A2UniSTS
D6Ertd588e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,249,506 - 15,249,715UniSTSGRCm38
MGSCv37615,199,506 - 15,199,715UniSTSGRCm37
Celera615,339,984 - 15,340,193UniSTS
Cytogenetic Map6A2UniSTS
cM Map62.0UniSTS
ECD06693  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,378,069 - 15,378,779UniSTSGRCm38
MGSCv37615,328,069 - 15,328,779UniSTSGRCm37
Celera615,468,477 - 15,469,187UniSTS
Cytogenetic Map6A2UniSTS
REN101860  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,123,745 - 15,123,992UniSTSGRCm38
MGSCv37615,073,745 - 15,073,992UniSTSGRCm37
Celera615,214,408 - 15,214,655UniSTS
Cytogenetic Map6A2UniSTS
REN101856  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,122,912 - 15,123,179UniSTSGRCm38
MGSCv37615,072,912 - 15,073,179UniSTSGRCm37
Celera615,213,575 - 15,213,842UniSTS
Cytogenetic Map6A2UniSTS
REN102194  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,183,094 - 15,183,318UniSTSGRCm38
MGSCv37615,133,094 - 15,133,318UniSTSGRCm37
Celera615,273,552 - 15,273,776UniSTS
Cytogenetic Map6A2UniSTS
REN102253  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,196,196 - 15,196,448UniSTSGRCm38
MGSCv37615,146,196 - 15,146,448UniSTSGRCm37
Celera615,286,653 - 15,286,906UniSTS
Cytogenetic Map6A2UniSTS
REN102204  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,185,439 - 15,185,687UniSTSGRCm38
MGSCv37615,135,439 - 15,135,687UniSTSGRCm37
Celera615,275,897 - 15,276,145UniSTS
Cytogenetic Map6A2UniSTS
REN102215  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,188,039 - 15,188,278UniSTSGRCm38
MGSCv37615,138,039 - 15,138,278UniSTSGRCm37
Celera615,278,496 - 15,278,735UniSTS
Cytogenetic Map6A2UniSTS
REN102214  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,187,803 - 15,188,056UniSTSGRCm38
MGSCv37615,137,803 - 15,138,056UniSTSGRCm37
Celera615,278,260 - 15,278,513UniSTS
Cytogenetic Map6A2UniSTS
REN102207  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,186,156 - 15,186,380UniSTSGRCm38
MGSCv37615,136,156 - 15,136,380UniSTSGRCm37
Celera615,276,613 - 15,276,837UniSTS
Cytogenetic Map6A2UniSTS
REN102203  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,185,139 - 15,185,444UniSTSGRCm38
MGSCv37615,135,139 - 15,135,444UniSTSGRCm37
Celera615,275,597 - 15,275,902UniSTS
Cytogenetic Map6A2UniSTS
REN102218  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,188,663 - 15,188,920UniSTSGRCm38
MGSCv37615,138,663 - 15,138,920UniSTSGRCm37
Celera615,279,120 - 15,279,377UniSTS
Cytogenetic Map6A2UniSTS
REN102585  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,257,699 - 15,257,949UniSTSGRCm38
MGSCv37615,207,699 - 15,207,949UniSTSGRCm37
Celera615,348,177 - 15,348,427UniSTS
Cytogenetic Map6A2UniSTS
REN102875  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,323,227 - 15,323,477UniSTSGRCm38
MGSCv37615,273,227 - 15,273,477UniSTSGRCm37
Celera615,413,735 - 15,413,985UniSTS
Cytogenetic Map6A2UniSTS
REN102278  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,201,842 - 15,202,077UniSTSGRCm38
MGSCv37615,151,842 - 15,152,077UniSTSGRCm37
Celera615,292,305 - 15,292,540UniSTS
Cytogenetic Map6A2UniSTS
REN102277  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,201,636 - 15,201,865UniSTSGRCm38
MGSCv37615,151,636 - 15,151,865UniSTSGRCm37
Celera615,292,099 - 15,292,328UniSTS
Cytogenetic Map6A2UniSTS
REN102254  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,196,437 - 15,196,698UniSTSGRCm38
MGSCv37615,146,437 - 15,146,698UniSTSGRCm37
Celera615,286,895 - 15,287,156UniSTS
Cytogenetic Map6A2UniSTS
REN102255  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,196,680 - 15,196,920UniSTSGRCm38
MGSCv37615,146,680 - 15,146,920UniSTSGRCm37
Celera615,287,138 - 15,287,378UniSTS
Cytogenetic Map6A2UniSTS
REN103256  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,404,973 - 15,405,223UniSTSGRCm38
MGSCv37615,354,973 - 15,355,223UniSTSGRCm37
Celera615,495,395 - 15,495,645UniSTS
Cytogenetic Map6A2UniSTS
REN103238  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,400,831 - 15,401,070UniSTSGRCm38
MGSCv37615,350,831 - 15,351,070UniSTSGRCm37
Celera615,491,255 - 15,491,494UniSTS
Cytogenetic Map6A2UniSTS
REN103155  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,378,348 - 15,378,610UniSTSGRCm38
MGSCv37615,328,348 - 15,328,610UniSTSGRCm37
Celera615,468,756 - 15,469,018UniSTS
Cytogenetic Map6A2UniSTS
REN103156  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,378,585 - 15,378,828UniSTSGRCm38
MGSCv37615,328,585 - 15,328,828UniSTSGRCm37
Celera615,468,993 - 15,469,236UniSTS
Cytogenetic Map6A2UniSTS
REN103240  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,401,278 - 15,401,526UniSTSGRCm38
MGSCv37615,351,278 - 15,351,526UniSTSGRCm37
Celera615,491,702 - 15,491,950UniSTS
Cytogenetic Map6A2UniSTS
REN103285  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,411,623 - 15,411,867UniSTSGRCm38
MGSCv37615,361,623 - 15,361,867UniSTSGRCm37
Celera615,502,045 - 15,502,289UniSTS
Cytogenetic Map6A2UniSTS
REN103287  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,412,104 - 15,412,353UniSTSGRCm38
MGSCv37615,362,104 - 15,362,353UniSTSGRCm37
Celera615,502,526 - 15,502,775UniSTS
Cytogenetic Map6A2UniSTS
REN103286  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,411,836 - 15,412,109UniSTSGRCm38
MGSCv37615,361,836 - 15,362,109UniSTSGRCm37
Celera615,502,258 - 15,502,531UniSTS
Cytogenetic Map6A2UniSTS
REN103265  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,406,923 - 15,407,163UniSTSGRCm38
MGSCv37615,356,923 - 15,357,163UniSTSGRCm37
Celera615,497,345 - 15,497,585UniSTS
Cytogenetic Map6A2UniSTS
REN103407  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,435,321 - 15,435,559UniSTSGRCm38
MGSCv37615,385,321 - 15,385,559UniSTSGRCm37
Celera615,525,698 - 15,525,936UniSTS
Cytogenetic Map6A2UniSTS
REN103413  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,436,698 - 15,436,933UniSTSGRCm38
MGSCv37615,386,698 - 15,386,933UniSTSGRCm37
Celera615,527,075 - 15,527,310UniSTS
Cytogenetic Map6A2UniSTS
REN103408  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,435,558 - 15,435,809UniSTSGRCm38
MGSCv37615,385,558 - 15,385,809UniSTSGRCm37
Celera615,525,935 - 15,526,186UniSTS
Cytogenetic Map6A2UniSTS
REN103414  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,436,881 - 15,437,125UniSTSGRCm38
MGSCv37615,386,881 - 15,387,125UniSTSGRCm37
Celera615,527,258 - 15,527,502UniSTS
Cytogenetic Map6A2UniSTS
REN103423  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,438,721 - 15,438,970UniSTSGRCm38
MGSCv37615,388,721 - 15,388,970UniSTSGRCm37
Celera615,529,098 - 15,529,347UniSTS
Cytogenetic Map6A2UniSTS
REN103422  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,438,471 - 15,438,723UniSTSGRCm38
MGSCv37615,388,471 - 15,388,723UniSTSGRCm37
Celera615,528,848 - 15,529,100UniSTS
Cytogenetic Map6A2UniSTS
REN103425  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,439,172 - 15,439,388UniSTSGRCm38
MGSCv37615,389,172 - 15,389,388UniSTSGRCm37
Celera615,529,549 - 15,529,765UniSTS
Cytogenetic Map6A2UniSTS
REN103424  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,438,944 - 15,439,195UniSTSGRCm38
MGSCv37615,388,944 - 15,389,195UniSTSGRCm37
Celera615,529,321 - 15,529,572UniSTS
Cytogenetic Map6A2UniSTS
REN103427  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,439,600 - 15,439,851UniSTSGRCm38
MGSCv37615,389,600 - 15,389,851UniSTSGRCm37
Celera615,529,977 - 15,530,228UniSTS
Cytogenetic Map6A2UniSTS
REN103428  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,439,827 - 15,440,076UniSTSGRCm38
MGSCv37615,389,827 - 15,390,076UniSTSGRCm37
Celera615,530,204 - 15,530,453UniSTS
Cytogenetic Map6A2UniSTS
REN103429  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,440,069 - 15,440,382UniSTSGRCm38
MGSCv37615,390,069 - 15,390,382UniSTSGRCm37
Celera615,530,446 - 15,530,758UniSTS
Cytogenetic Map6A2UniSTS
REN103432  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,440,811 - 15,441,034UniSTSGRCm38
MGSCv37615,390,811 - 15,391,034UniSTSGRCm37
Celera615,531,187 - 15,531,410UniSTS
Cytogenetic Map6A2UniSTS
REN103431  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,440,591 - 15,440,836UniSTSGRCm38
MGSCv37615,390,591 - 15,390,836UniSTSGRCm37
Celera615,530,967 - 15,531,212UniSTS
Cytogenetic Map6A2UniSTS
REN103433  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,440,986 - 15,441,232UniSTSGRCm38
MGSCv37615,390,986 - 15,391,232UniSTSGRCm37
Celera615,531,362 - 15,531,608UniSTS
Cytogenetic Map6A2UniSTS
D6Mit1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,144,274 - 15,144,496UniSTSGRCm38
MGSCv37615,094,274 - 15,094,496UniSTSGRCm37
Celera615,234,937 - 15,235,159UniSTS
Cytogenetic Map6A2UniSTS
cM Map62.8UniSTS
Whitehead Genetic63.3UniSTS
Whitehead_YAC6 UniSTS
stSG611314  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,202,508 - 15,203,543UniSTSGRCm38
MGSCv37615,152,508 - 15,153,543UniSTSGRCm37
Celera615,292,971 - 15,294,006UniSTS
Cytogenetic Map6A2UniSTS
stSG611484  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,400,227 - 15,401,477UniSTSGRCm38
MGSCv37615,350,227 - 15,351,477UniSTSGRCm37
Celera615,490,651 - 15,491,901UniSTS
Cytogenetic Map6A2UniSTS
stSG611494  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,411,703 - 15,412,845UniSTSGRCm38
MGSCv37615,361,703 - 15,362,845UniSTSGRCm37
Celera615,502,125 - 15,503,267UniSTS
Cytogenetic Map6A2UniSTS
stSG611518  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,435,544 - 15,435,787UniSTSGRCm38
MGSCv37615,385,544 - 15,385,787UniSTSGRCm37
Celera615,525,921 - 15,526,164UniSTS
Cytogenetic Map6A2UniSTS
stSG611521  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,438,430 - 15,439,808UniSTSGRCm38
MGSCv37615,388,430 - 15,389,808UniSTSGRCm37
Celera615,528,807 - 15,530,185UniSTS
Cytogenetic Map6A2UniSTS
stSG611519  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,435,793 - 15,437,033UniSTSGRCm38
MGSCv37615,385,793 - 15,387,033UniSTSGRCm37
Celera615,526,170 - 15,527,410UniSTS
Cytogenetic Map6A2UniSTS
stSG611520  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,437,014 - 15,438,440UniSTSGRCm38
MGSCv37615,387,014 - 15,388,440UniSTSGRCm37
Celera615,527,391 - 15,528,817UniSTS
Cytogenetic Map6A2UniSTS
MARC_13931-13932:1007579490:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,440,512 - 15,440,991UniSTSGRCm38
MGSCv37615,390,512 - 15,390,991UniSTSGRCm37
Celera615,530,888 - 15,531,367UniSTS
Cytogenetic Map6A2UniSTS
ECD00202  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,410,699 - 15,411,642UniSTSGRCm38
MGSCv37615,360,699 - 15,361,642UniSTSGRCm37
Celera615,501,121 - 15,502,064UniSTS
Cytogenetic Map6A2UniSTS
ECD00361  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,412,686 - 15,413,630UniSTSGRCm38
MGSCv37615,362,686 - 15,363,630UniSTSGRCm37
Celera615,503,108 - 15,504,052UniSTS
Cytogenetic Map6A2UniSTS
ECD01298  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,411,689 - 15,412,587UniSTSGRCm38
MGSCv37615,361,689 - 15,362,587UniSTSGRCm37
Celera615,502,111 - 15,503,009UniSTS
Cytogenetic Map6A2UniSTS
ECD02531  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,439,233 - 15,440,064UniSTSGRCm38
MGSCv37615,389,233 - 15,390,064UniSTSGRCm37
Celera615,529,610 - 15,530,441UniSTS
Cytogenetic Map6A2UniSTS
ECD02857  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,438,366 - 15,439,195UniSTSGRCm38
MGSCv37615,388,366 - 15,389,195UniSTSGRCm37
Celera615,528,743 - 15,529,572UniSTS
Cytogenetic Map6A2UniSTS
ECD03612  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,185,435 - 15,186,260UniSTSGRCm38
MGSCv37615,135,435 - 15,136,260UniSTSGRCm37
Celera615,275,893 - 15,276,717UniSTS
Cytogenetic Map6A2UniSTS
ECD04224  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,440,187 - 15,440,957UniSTSGRCm38
MGSCv37615,390,187 - 15,390,957UniSTSGRCm37
Celera615,530,563 - 15,531,333UniSTS
Cytogenetic Map6A2UniSTS
ECD04612  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38615,188,038 - 15,188,797UniSTSGRCm38
MGSCv37615,138,038 - 15,138,797UniSTSGRCm37
Celera615,278,495 - 15,279,254UniSTS
Cytogenetic Map6A2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
14746985Manh59_mmandible shape 59 (mouse)6120847193Mouse
1357503Nhdlq5_mnon-HDL QTL 5 (mouse)Not determined6121465015Mouse
1301178Lith10_mlithogenic gene 10 (mouse)Not determined6121465015Mouse
10043884Bhr8_mbronchial hyperresponsiveness 8 (mouse)Not determined6121465015Mouse
10044000Mobq9_mmultigenetic obesity QTL 9 (mouse)Not determined6121465015Mouse
12904934Edlmmq4_mextensor digitorum longus muscle mass QTL 4 (mouse)6125514064Mouse
12904942Tammq3_mtibialis anterior muscle mass QTL 3 (mouse)6125514064Mouse
12904955Gmmq3_mgastrocnemius muscle mass QTL 3 (mouse)6125514064Mouse
1301131Chol2_mcholesterol 2 (mouse)Not determined6132144496Mouse
5491191Mobq2_mmultigenic obesity QTL 2 (mouse)Not determined6132144496Mouse
1302024Skull7_mskull morphology 7 (mouse)Not determined6132144496Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
15039372Nmrs22_mNAFLD-associated magnetic resonance shift 22 (mouse)6147633535476335Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300731Smdq3_msegregation of mitochondrial DNA QTL 3 (mouse)Not determined6424920738249326Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
11353836Bmiq1_mbody mass index QTL 1 (mouse)6450382329751334Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345314181Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348726677Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348726677Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348726677Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080600000Mouse
1302051Sluc7_msusceptibility to lung cancer 7 (mouse)Not determined6929707543297169Mouse
10043869Cia6a_mcollagen induced arthritis QTL 6a (mouse)Not determined61211797246118070Mouse
1301998Bts2_mbladder tumor susceptibility 2 (mouse)Not determined61275122246751334Mouse
4141749Obrq2_mobesity resistance QTL 2 (mouse)Not determined1275122246751334Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5920
Count of miRNA genes:982
Interacting mature miRNAs:1502
Transcripts:ENSMUST00000031545, ENSMUST00000115469, ENSMUST00000115470, ENSMUST00000115472, ENSMUST00000115474, ENSMUST00000115475, ENSMUST00000115477, ENSMUST00000118133, ENSMUST00000128567, ENSMUST00000131414, ENSMUST00000137628, ENSMUST00000138273, ENSMUST00000140557, ENSMUST00000151060, ENSMUST00000151301, ENSMUST00000152563, ENSMUST00000154448, ENSMUST00000156883, ENSMUST00000159788
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001286607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_053242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_212435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC127320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC147053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC150746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC163724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF339106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY079003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC062926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN526766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U80894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000031545   ⟹   ENSMUSP00000031545
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl615,185,506 - 15,441,201 (+)Ensembl
RefSeq Acc Id: ENSMUST00000115469   ⟹   ENSMUSP00000111129
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl615,196,964 - 15,405,675 (+)Ensembl
RefSeq Acc Id: ENSMUST00000115470   ⟹   ENSMUSP00000111130
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl615,184,647 - 15,199,344 (+)Ensembl
RefSeq Acc Id: ENSMUST00000115472   ⟹   ENSMUSP00000111132
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl615,185,506 - 15,438,304 (+)Ensembl
RefSeq Acc Id: ENSMUST00000115474   ⟹   ENSMUSP00000111134
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl615,185,506 - 15,438,023 (+)Ensembl
RefSeq Acc Id: ENSMUST00000115475   ⟹   ENSMUSP00000111135
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl615,376,689 - 15,439,048 (+)Ensembl
RefSeq Acc Id: ENSMUST00000115477   ⟹   ENSMUSP00000111137
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl614,901,349 - 15,441,977 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128567   ⟹   ENSMUSP00000123067
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl614,901,477 - 15,286,770 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131414   ⟹   ENSMUSP00000123007
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl615,196,951 - 15,405,675 (+)Ensembl
RefSeq Acc Id: ENSMUST00000137628   ⟹   ENSMUSP00000116650
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl615,185,563 - 15,394,815 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138273
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl614,901,478 - 15,287,752 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140557   ⟹   ENSMUSP00000121503
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl615,196,951 - 15,379,819 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151060
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl614,901,388 - 15,411,938 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151301
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl615,196,949 - 15,397,843 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152563
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl615,376,689 - 15,378,088 (+)Ensembl
RefSeq Acc Id: ENSMUST00000154448   ⟹   ENSMUSP00000116017
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl615,185,203 - 15,197,075 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156883
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl614,903,457 - 15,196,959 (+)Ensembl
RefSeq Acc Id: ENSMUST00000159788
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl615,254,283 - 15,286,770 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203227
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl615,324,288 - 15,325,465 (+)Ensembl
RefSeq Acc Id: ENSMUST00000204869
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl614,901,451 - 14,992,517 (+)Ensembl
RefSeq Acc Id: NM_001286607   ⟹   NP_001273536
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39615,185,505 - 15,441,976 (+)NCBI
GRCm38615,185,506 - 15,441,977 (+)NCBI
Celera614,991,559 - 15,532,353 (+)NCBI
Sequence:
RefSeq Acc Id: NM_053242   ⟹   NP_444472
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39614,901,348 - 15,441,976 (+)NCBI
GRCm38614,901,349 - 15,441,977 (+)NCBI
MGSCv37614,851,349 - 15,391,977 (+)RGD
Celera614,991,559 - 15,532,353 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_212435   ⟹   NP_997600
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39615,185,505 - 15,441,976 (+)NCBI
GRCm38615,185,506 - 15,441,977 (+)NCBI
MGSCv37614,851,349 - 15,391,977 (+)RGD
Celera614,991,559 - 15,532,353 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036165752   ⟹   XP_036021645
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39615,196,950 - 15,441,896 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_444472   ⟸   NM_053242
- Peptide Label: isoform 1
- UniProtKB: P58463 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_997600   ⟸   NM_212435
- Peptide Label: isoform 1
- UniProtKB: P58463 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001273536   ⟸   NM_001286607
- Peptide Label: isoform 2
- UniProtKB: P58463 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000031545   ⟸   ENSMUST00000031545
RefSeq Acc Id: ENSMUSP00000123007   ⟸   ENSMUST00000131414
RefSeq Acc Id: ENSMUSP00000116017   ⟸   ENSMUST00000154448
RefSeq Acc Id: ENSMUSP00000111129   ⟸   ENSMUST00000115469
RefSeq Acc Id: ENSMUSP00000111137   ⟸   ENSMUST00000115477
RefSeq Acc Id: ENSMUSP00000111135   ⟸   ENSMUST00000115475
RefSeq Acc Id: ENSMUSP00000111134   ⟸   ENSMUST00000115474
RefSeq Acc Id: ENSMUSP00000111132   ⟸   ENSMUST00000115472
RefSeq Acc Id: ENSMUSP00000111130   ⟸   ENSMUST00000115470
RefSeq Acc Id: ENSMUSP00000121503   ⟸   ENSMUST00000140557
RefSeq Acc Id: ENSMUSP00000123067   ⟸   ENSMUST00000128567
RefSeq Acc Id: ENSMUSP00000116650   ⟸   ENSMUST00000137628
RefSeq Acc Id: XP_036021645   ⟸   XM_036165752
- Peptide Label: isoform X1
Protein Domains
Fork-head   FOXP-CC

Promoters
RGD ID:6839311
Promoter ID:MM_KWN:45203
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B4,   MEF_B6
Transcripts:NM_053242,   OTTMUST00000054225,   UC009AYX.1,   UC009AYY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36614,850,456 - 14,850,956 (+)MPROMDB
RGD ID:6889102
Promoter ID:EPDNEW_M7970
Type:initiation region
Name:Foxp2_1
Description:Mus musculus forkhead box P2 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7971  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38614,901,326 - 14,901,386EPDNEW
RGD ID:6889040
Promoter ID:EPDNEW_M7971
Type:initiation region
Name:Foxp2_2
Description:Mus musculus forkhead box P2 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7970  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38614,901,505 - 14,901,565EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2148705 AgrOrtholog
Ensembl Genes ENSMUSG00000029563 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000031545 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000111129 UniProtKB/TrEMBL
  ENSMUSP00000111130 UniProtKB/TrEMBL
  ENSMUSP00000111132 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000111134 UniProtKB/TrEMBL
  ENSMUSP00000111135 UniProtKB/TrEMBL
  ENSMUSP00000111137 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000116017 UniProtKB/TrEMBL
  ENSMUSP00000116650 UniProtKB/TrEMBL
  ENSMUSP00000121503 UniProtKB/TrEMBL
  ENSMUSP00000123007 UniProtKB/TrEMBL
  ENSMUSP00000123067 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000031545 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000115469 UniProtKB/TrEMBL
  ENSMUST00000115470 UniProtKB/TrEMBL
  ENSMUST00000115472 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000115474 UniProtKB/TrEMBL
  ENSMUST00000115475 UniProtKB/TrEMBL
  ENSMUST00000115477 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000128567 UniProtKB/TrEMBL
  ENSMUST00000131414 UniProtKB/TrEMBL
  ENSMUST00000137628 UniProtKB/TrEMBL
  ENSMUST00000140557 UniProtKB/TrEMBL
  ENSMUST00000154448 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Fork_head_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FOXP-CC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_fork_head_CS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:114142 UniProtKB/Swiss-Prot
MGD MGI:2148705 ENTREZGENE
NCBI Gene 114142 ENTREZGENE
Pfam Forkhead UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FOXP-CC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Foxp2 PhenoGen
PRINTS FORKHEAD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FORK_HEAD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FORK_HEAD_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
SMART SM00339 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3YUM2_MOUSE UniProtKB/TrEMBL
  D3YUQ7_MOUSE UniProtKB/TrEMBL
  D3Z142_MOUSE UniProtKB/TrEMBL
  D3Z146_MOUSE UniProtKB/TrEMBL
  D3Z2Q6_MOUSE UniProtKB/TrEMBL
  D3Z4F4_MOUSE UniProtKB/TrEMBL
  D3Z7E9_MOUSE UniProtKB/TrEMBL
  F6UMM1_MOUSE UniProtKB/TrEMBL
  FOXP2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TPK1_MOUSE UniProtKB/TrEMBL
  Q8BQ27_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q6PD37 UniProtKB/Swiss-Prot
  Q8C4F0 UniProtKB/Swiss-Prot
  Q8R441 UniProtKB/Swiss-Prot