Slc25a43 (solute carrier family 25, member 43) - Rat Genome Database

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Gene: Slc25a43 (solute carrier family 25, member 43) Mus musculus
Analyze
Symbol: Slc25a43
Name: solute carrier family 25, member 43
RGD ID: 1615734
MGI Page MGI
Description: Predicted to be involved in transmembrane transport. Located in mitochondrion. Orthologous to human SLC25A43 (solute carrier family 25 member 43).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Gm8; mitochondrial solute carrier protein; novel mitochondrial carrier domain-containing protein; Slc25a37; solute carrier family 25 member 43
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X36,007,223 - 36,040,960 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX36,007,312 - 36,040,855 (+)EnsemblGRCm39 Ensembl
GRCm38X36,743,570 - 36,777,307 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX36,743,659 - 36,777,202 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X34,283,654 - 34,317,197 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X33,175,104 - 33,208,667 (+)NCBIMGSCv36mm8
CeleraX23,467,500 - 23,501,050 (+)NCBICelera
Cytogenetic MapXA3.3NCBI
cM MapX21.15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:14681479   PMID:16141072   PMID:16141073   PMID:18614015   PMID:18799693  
PMID:21267068   PMID:21677750   PMID:24194600   PMID:30973865   PMID:38355793  


Genomics

Comparative Map Data
Slc25a43
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X36,007,223 - 36,040,960 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX36,007,312 - 36,040,855 (+)EnsemblGRCm39 Ensembl
GRCm38X36,743,570 - 36,777,307 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX36,743,659 - 36,777,202 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X34,283,654 - 34,317,197 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X33,175,104 - 33,208,667 (+)NCBIMGSCv36mm8
CeleraX23,467,500 - 23,501,050 (+)NCBICelera
Cytogenetic MapXA3.3NCBI
cM MapX21.15NCBI
SLC25A43
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X119,399,336 - 119,454,478 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX119,399,336 - 119,454,478 (+)EnsemblGRCh38hg38GRCh38
GRCh37X118,533,299 - 118,588,441 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X118,417,051 - 118,472,462 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX118,987,995 - 119,043,163 (+)NCBICelera
Cytogenetic MapXq24NCBI
HuRefX108,026,280 - 108,081,595 (+)NCBIHuRef
CHM1_1X118,444,484 - 118,499,613 (+)NCBICHM1_1
T2T-CHM13v2.0X117,777,069 - 117,832,189 (+)NCBIT2T-CHM13v2.0
Slc25a43
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X120,843,181 - 120,877,515 (+)NCBIGRCr8
mRatBN7.2X115,977,437 - 116,011,789 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX115,977,510 - 116,011,205 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X123,349,836 - 123,384,798 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX123,350,346 - 123,384,846 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X123,495,546 - 123,529,964 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X8,096,134 - 8,129,172 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX115,207,320 - 115,241,851 (+)NCBICelera
Cytogenetic MapXq34NCBI
Slc25a43
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955534510,898 - 548,047 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955534513,757 - 548,027 (-)NCBIChiLan1.0ChiLan1.0
SLC25A43
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X118,783,908 - 118,833,815 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X118,787,584 - 118,838,056 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X108,435,500 - 108,485,383 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X118,861,673 - 118,910,892 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX118,861,673 - 118,910,892 (+)Ensemblpanpan1.1panPan2
SLC25A43
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X91,471,700 - 91,511,373 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX91,471,642 - 91,509,790 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX77,548,122 - 77,586,215 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X93,212,826 - 93,250,836 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX93,212,102 - 93,249,250 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X90,665,636 - 90,703,655 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X92,424,339 - 92,462,345 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X92,153,245 - 92,191,350 (+)NCBIUU_Cfam_GSD_1.0
Slc25a43
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X90,488,242 - 90,531,863 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647910,453,187 - 10,499,251 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647910,455,632 - 10,499,224 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A43
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX97,868,696 - 97,906,760 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X97,868,804 - 97,906,771 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X113,758,765 - 113,796,853 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A43
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606532,147,116 - 32,195,759 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a43
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248953,428,522 - 3,459,848 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248953,428,439 - 3,460,829 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc25a43
750 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:116
Count of miRNA genes:111
Interacting mature miRNAs:116
Transcripts:ENSMUST00000047655, ENSMUST00000133699
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208553Wght11_mweight 11 (mouse)X1186623959045360Mouse
12738418Lfibq12_mliver fibrosis QTL 12 (mouse)X2572817443635700Mouse
27226750Femd9_mfemur midshaft diameter 9, 10 week (mouse)X3333746355845360Mouse
27226780Femd12_mfemur midshaft diameter 12, 16 week (mouse)X3466365356845360Mouse
13208557Lgth13_mbody length 13 (mouse)X1186623959045360Mouse
1558721Bw1_mbody weight QTL 1 (mouse)Not determinedX2060678347179225Mouse
1301551Spha1_msperm head anomaly 1 (mouse)Not determinedX1026622539921652Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse

Markers in Region
Slc25a43  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXA3.3UniSTS
cM MapX21.15UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000047655   ⟹   ENSMUSP00000035392
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX36,007,312 - 36,040,855 (+)Ensembl
GRCm38.p6 EnsemblX36,743,659 - 36,777,202 (+)Ensembl
Ensembl Acc Id: ENSMUST00000133699
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX36,007,364 - 36,039,938 (+)Ensembl
GRCm38.p6 EnsemblX36,743,711 - 36,776,285 (+)Ensembl
RefSeq Acc Id: NM_001085497   ⟹   NP_001078966
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X36,007,285 - 36,040,960 (+)NCBI
GRCm38X36,743,632 - 36,777,307 (+)NCBI
MGSCv37X34,283,654 - 34,317,197 (+)RGD
CeleraX23,467,473 - 23,501,155 (+)NCBI
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NR_075096
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X36,007,285 - 36,040,960 (+)NCBI
GRCm38X36,743,632 - 36,777,307 (+)NCBI
CeleraX23,467,473 - 23,501,155 (+)NCBI
Sequence:
RefSeq Acc Id: NR_075097
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X36,007,285 - 36,040,960 (+)NCBI
GRCm38X36,743,632 - 36,777,307 (+)NCBI
CeleraX23,467,473 - 23,501,155 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006541378   ⟹   XP_006541441
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X36,007,223 - 36,023,492 (+)NCBI
GRCm38X36,743,570 - 36,759,839 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006541379   ⟹   XP_006541442
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X36,007,224 - 36,023,492 (+)NCBI
GRCm38X36,743,571 - 36,759,839 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006541380   ⟹   XP_006541443
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X36,007,224 - 36,022,964 (+)NCBI
GRCm38X36,743,571 - 36,759,311 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006541381   ⟹   XP_006541444
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X36,007,224 - 36,022,964 (+)NCBI
GRCm38X36,743,571 - 36,759,311 (+)NCBI
Sequence:
RefSeq Acc Id: XR_391662
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X36,007,224 - 36,023,492 (+)NCBI
GRCm38X36,743,571 - 36,759,839 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001078966   ⟸   NM_001085497
- UniProtKB: A2A3V2 (UniProtKB/Swiss-Prot),   B2RWC0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006541441   ⟸   XM_006541378
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006541442   ⟸   XM_006541379
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006541444   ⟸   XM_006541381
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006541443   ⟸   XM_006541380
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSMUSP00000035392   ⟸   ENSMUST00000047655

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A2A3V2-F1-model_v2 AlphaFold A2A3V2 1-341 view protein structure

Promoters
RGD ID:6846372
Promoter ID:MM_KWN:60000
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   MEF_B6
Transcripts:NM_001085497,   UC009SXQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X34,283,481 - 34,283,981 (+)MPROMDB
RGD ID:13680270
Promoter ID:EPDNEW_M24284
Type:initiation region
Name:Slc25a43_1
Description:Mus musculus solute carrier family 25, member 43 , transcriptvariant 3, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X36,743,710 - 36,743,770EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2684854 AgrOrtholog
Ensembl Genes ENSMUSG00000037636 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000047655 ENTREZGENE
  ENSMUST00000047655.7 UniProtKB/Swiss-Prot
Gene3D-CATH 1.50.40.10 UniProtKB/Swiss-Prot
InterPro Mit_carrier UniProtKB/Swiss-Prot
  Mitochondrial_sb/sol_carrier UniProtKB/Swiss-Prot
  Mt_carrier_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:194744 UniProtKB/Swiss-Prot
MGD MGI:2684854 ENTREZGENE
NCBI Gene 194744 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 25 UniProtKB/Swiss-Prot
Pfam Mito_carr UniProtKB/Swiss-Prot
PhenoGen Slc25a43 PhenoGen
PRINTS MITOCARRIER UniProtKB/Swiss-Prot
PROSITE SOLCAR UniProtKB/Swiss-Prot
Superfamily-SCOP SSF103506 UniProtKB/Swiss-Prot
UniProt A2A3V2 ENTREZGENE
  B2RWC0 ENTREZGENE
  S2543_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary B2RWC0 UniProtKB/Swiss-Prot