Tut7 (terminal uridylyl transferase 7) - Rat Genome Database

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Gene: Tut7 (terminal uridylyl transferase 7) Mus musculus
Analyze
Symbol: Tut7
Name: terminal uridylyl transferase 7
RGD ID: 1615714
MGI Page MGI
Description: Enables uridylyltransferase activity. Involved in RNA 3' uridylation; oocyte maturation; and polyuridylation-dependent mRNA catabolic process. Predicted to be located in cytosol and nucleoplasm. Is expressed in autopod; early conceptus; genitourinary system; sensory organ; and skeleton. Orthologous to human TUT7 (terminal uridylyl transferase 7).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6030448M23Rik; AA420405; MGC38585; Tent3; Tent3b; terminal uridylyltransferase 7; TUTase 7; Zcchc6; zinc finger CCHC domain-containing protein 6; zinc finger, CCHC domain containing 6
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm18769   Gm18770   Gm18771  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391359,919,690 - 59,971,060 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1359,919,375 - 59,970,961 (-)EnsemblGRCm39 Ensembl
GRCm381359,771,876 - 59,823,169 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1359,771,561 - 59,823,147 (-)EnsemblGRCm38mm10GRCm38
MGSCv371359,873,240 - 59,924,508 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361359,781,502 - 59,832,724 (-)NCBIMGSCv36mm8
Celera1360,831,422 - 60,882,680 (-)NCBICelera
Cytogenetic Map13B2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (ISO)
nucleoplasm  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. The long and short of microRNA. Yates LA, etal., Cell. 2013 Apr 25;153(3):516-9. doi: 10.1016/j.cell.2013.04.003.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273  
PMID:15489334   PMID:15618518   PMID:16141072   PMID:16141073   PMID:18287559   PMID:20412781   PMID:20657840   PMID:21267068   PMID:21873635   PMID:22988430   PMID:28665939   PMID:28792939  
PMID:30196744   PMID:30302948   PMID:30617251   PMID:31777931   PMID:34188032  


Genomics

Comparative Map Data
Tut7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391359,919,690 - 59,971,060 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1359,919,375 - 59,970,961 (-)EnsemblGRCm39 Ensembl
GRCm381359,771,876 - 59,823,169 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1359,771,561 - 59,823,147 (-)EnsemblGRCm38mm10GRCm38
MGSCv371359,873,240 - 59,924,508 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361359,781,502 - 59,832,724 (-)NCBIMGSCv36mm8
Celera1360,831,422 - 60,882,680 (-)NCBICelera
Cytogenetic Map13B2NCBI
TUT7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38986,287,733 - 86,354,410 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl986,287,733 - 86,354,454 (-)EnsemblGRCh38hg38GRCh38
GRCh37988,902,648 - 88,969,325 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36988,092,468 - 88,159,189 (-)NCBINCBI36Build 36hg18NCBI36
Build 34986,132,203 - 86,198,923NCBI
Celera959,472,766 - 59,539,516 (-)NCBICelera
Cytogenetic Map9q21.33NCBI
HuRef958,725,479 - 58,792,201 (-)NCBIHuRef
CHM1_1989,049,089 - 89,115,852 (-)NCBICHM1_1
T2T-CHM13v2.0998,438,962 - 98,505,656 (-)NCBIT2T-CHM13v2.0
Tut7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2174,849,287 - 4,903,542 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl174,849,283 - 4,903,169 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0175,225,854 - 5,279,674 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl175,225,835 - 5,271,794 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0177,451,199 - 7,505,016 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41710,752,875 - 10,806,477 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera174,970,855 - 5,024,770 (+)NCBICelera
Cytogenetic Map17p14NCBI
Tut7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554321,268,103 - 1,329,436 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554321,268,217 - 1,330,385 (+)NCBIChiLan1.0ChiLan1.0
TUT7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1985,489,974 - 85,554,745 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl985,486,521 - 85,554,745 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0957,433,583 - 57,498,675 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
TUT7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1173,400,648 - 73,464,935 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl173,401,421 - 73,475,493 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha174,162,268 - 74,226,563 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0173,707,237 - 73,771,495 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl173,707,227 - 73,771,495 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1173,515,084 - 73,579,269 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0173,281,944 - 73,345,972 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0173,987,748 - 74,051,975 (+)NCBIUU_Cfam_GSD_1.0
Tut7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947119,984,394 - 120,043,816 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366801,705,691 - 1,752,423 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049366801,693,815 - 1,753,641 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TUT7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1028,995,565 - 29,061,176 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11028,995,564 - 29,061,179 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21033,038,194 - 33,103,962 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TUT7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11296,920,632 - 96,987,114 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1296,920,021 - 96,986,165 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603885,271,931 - 85,337,399 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tut7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480911,031,693 - 11,084,723 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480911,030,422 - 11,094,754 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:266
Count of miRNA genes:222
Interacting mature miRNAs:238
Transcripts:ENSMUST00000071703
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132061551272385189Mouse
10401111Pgia40_mproteoglycan induced arthritis 40 (mouse)Not determined132791846961918560Mouse
1300710Pcd4ts2_mp-glycoprotein positive CD4 T cell subset 2 (mouse)Not determined132821044262210544Mouse
1357802Vtbt15_mvertebral trabecular bone trait 15 (mouse)Not determined132821737962217515Mouse
10045621Heal21_mwound healing/regeneration 21 (mouse)Not determined132821737962217515Mouse
10755533Chol18_mcholesterol 18 (mouse)133096946764969467Mouse
10755517Chol15_mcholesterol 15 (mouse)133096946764969467Mouse
12738439Twq4_mtestis weight QTL 4 (mouse)133112911065129110Mouse
14696729Kidlq2_mkidney weight, left QTL 2 (mouse)133134473665344736Mouse
1301299Sluc23_msusceptibility to lung cancer 23 (mouse)Not determined133492194368922081Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
1357587Pfat3_mpredicted fat percentage 3 (mouse)Not determined133610153070101640Mouse
1301734Acsns2_mAngiostrongylus costaricensis nematode susceptibility 2 (mouse)Not determined133610153070101640Mouse
1300561Heal7_mwound healing/regeneration 7 (mouse)Not determined133614482070144904Mouse
1300862Cfbw5_mcystic fibrosis body weight 5 (mouse)Not determined133872035872720517Mouse
1300985Bmd13_mbone mineral density 13 (mouse)Not determined133962924973629397Mouse
1302157Bwem2_mbody weight day 30 males 2 (mouse)Not determined133962924973629397Mouse
1301801Cpfd5_mcerebellum pattern fissures (mouse)Not determined133962924973629397Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse
26884396Humsd4_mhumerus midshaft diameter 4, 10 week (mouse)134785347673148119Mouse
4142372Moo2_mmodifier of Odc2 (mouse)Not determinedX5031841184318559Mouse
1301666Eae13_msusceptibility to experimental allergic encephalomyelitis 13 (mouse)Not determined135031841184318559Mouse
1300573Elsgp2_melevated serum gp70 2 (mouse)Not determined135061682884617027Mouse
14746975Manh74_mmandible shape 74 (mouse)135247726986477269Mouse
1302073Pgct1_mprimordial germ cell tumor locus 1 (mouse)Not determined135382078387820897Mouse
1357563Bmch6_mbone mechanical trait 6 (mouse)Not determined135538498089385140Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
1558850Sgp3_mserum gp70 production 3 (mouse)Not determined135647045676971314Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135662924996239162Mouse
10412163Wra1_mwheel running activity 1 (mouse)Not determined135913260093132738Mouse

Markers in Region
C88041  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381359,820,289 - 59,820,431UniSTSGRCm38
MGSCv371359,921,650 - 59,921,792UniSTSGRCm37
Celera1360,879,822 - 60,879,964UniSTS
Cytogenetic Map13B2UniSTS
Whitehead/MRC_RH13614.94UniSTS
AW491659  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381359,771,697 - 59,771,808UniSTSGRCm38
MGSCv371359,873,058 - 59,873,169UniSTSGRCm37
Celera1360,831,240 - 60,831,351UniSTS
Cytogenetic Map13B2UniSTS
Whitehead/MRC_RH13630.57UniSTS
RH125558  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381359,820,656 - 59,820,933UniSTSGRCm38
MGSCv371359,922,017 - 59,922,294UniSTSGRCm37
Celera1360,880,189 - 60,880,466UniSTS
Cytogenetic Map13B2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001373962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001373963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001373964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_153538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003950441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003950442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003950443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004938010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004938011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004938012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC125350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC134869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB526652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ054882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000071703   ⟹   ENSMUSP00000071623
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1359,919,375 - 59,970,961 (-)Ensembl
GRCm38.p6 Ensembl1359,771,561 - 59,823,147 (-)Ensembl
RefSeq Acc Id: ENSMUST00000224320
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1359,919,694 - 59,933,188 (-)Ensembl
GRCm38.p6 Ensembl1359,771,880 - 59,785,374 (-)Ensembl
RefSeq Acc Id: ENSMUST00000224480   ⟹   ENSMUSP00000153376
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1359,919,690 - 59,957,320 (-)Ensembl
GRCm38.p6 Ensembl1359,771,876 - 59,809,506 (-)Ensembl
RefSeq Acc Id: ENSMUST00000224845
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1359,920,091 - 59,928,434 (-)Ensembl
GRCm38.p6 Ensembl1359,772,277 - 59,780,620 (-)Ensembl
RefSeq Acc Id: ENSMUST00000225179   ⟹   ENSMUSP00000153353
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1359,969,445 - 59,970,928 (-)Ensembl
GRCm38.p6 Ensembl1359,821,631 - 59,823,114 (-)Ensembl
RefSeq Acc Id: ENSMUST00000225241   ⟹   ENSMUSP00000153412
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1359,948,150 - 59,957,292 (-)Ensembl
GRCm38.p6 Ensembl1359,800,336 - 59,809,478 (-)Ensembl
RefSeq Acc Id: ENSMUST00000225576   ⟹   ENSMUSP00000153310
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1359,967,927 - 59,970,947 (-)Ensembl
GRCm38.p6 Ensembl1359,820,113 - 59,823,133 (-)Ensembl
RefSeq Acc Id: ENSMUST00000225607
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1359,920,448 - 59,932,654 (-)Ensembl
GRCm38.p6 Ensembl1359,772,634 - 59,784,840 (-)Ensembl
RefSeq Acc Id: ENSMUST00000225944
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1359,942,850 - 59,944,944 (-)Ensembl
GRCm38.p6 Ensembl1359,795,036 - 59,797,130 (-)Ensembl
RefSeq Acc Id: ENSMUST00000225987   ⟹   ENSMUSP00000153202
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1359,969,622 - 59,970,402 (-)Ensembl
GRCm38.p6 Ensembl1359,821,808 - 59,822,588 (-)Ensembl
RefSeq Acc Id: NM_001373962   ⟹   NP_001360891
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391359,919,690 - 59,970,924 (-)NCBI
GRCm381359,771,876 - 59,823,110 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001373963   ⟹   NP_001360892
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391359,919,690 - 59,970,924 (-)NCBI
GRCm381359,771,876 - 59,823,110 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001373964   ⟹   NP_001360893
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391359,919,690 - 59,970,924 (-)NCBI
GRCm381359,771,876 - 59,823,110 (-)NCBI
Sequence:
RefSeq Acc Id: NM_153538   ⟹   NP_705766
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391359,919,693 - 59,970,961 (-)NCBI
GRCm381359,771,879 - 59,823,147 (-)NCBI
MGSCv371359,873,240 - 59,924,508 (-)RGD
Celera1360,831,422 - 60,882,680 (-)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006517207   ⟹   XP_006517270
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391359,919,690 - 59,970,967 (-)NCBI
GRCm381359,771,876 - 59,823,103 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006517209   ⟹   XP_006517272
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391359,919,690 - 59,970,967 (-)NCBI
GRCm381359,771,876 - 59,823,103 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157971   ⟹   XP_036013864
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391359,919,690 - 59,971,060 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157972   ⟹   XP_036013865
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391359,919,690 - 59,971,060 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157973   ⟹   XP_036013866
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391359,919,690 - 59,970,940 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003950441
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391359,919,690 - 59,970,967 (-)NCBI
GRCm381359,771,876 - 59,823,103 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003950442
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391359,919,690 - 59,970,940 (-)NCBI
GRCm381359,771,876 - 59,823,126 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003950443
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391359,919,690 - 59,971,060 (-)NCBI
GRCm381359,771,876 - 59,823,169 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004938010
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391359,919,690 - 59,963,449 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004938011
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391359,919,690 - 59,970,967 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004938012
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391359,919,690 - 59,970,967 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_705766   ⟸   NM_153538
- Peptide Label: isoform 2
- UniProtKB: Q5BLK4 (UniProtKB/Swiss-Prot),   E9PUA2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006517272   ⟸   XM_006517209
- Peptide Label: isoform X3
- UniProtKB: E9PUA2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006517270   ⟸   XM_006517207
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001360892   ⟸   NM_001373963
- Peptide Label: isoform 3
- UniProtKB: Q8CIH3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001360893   ⟸   NM_001373964
- Peptide Label: isoform 1
RefSeq Acc Id: NP_001360891   ⟸   NM_001373962
- Peptide Label: isoform 3
- UniProtKB: Q8CIH3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000071623   ⟸   ENSMUST00000071703
RefSeq Acc Id: ENSMUSP00000153412   ⟸   ENSMUST00000225241
RefSeq Acc Id: ENSMUSP00000153353   ⟸   ENSMUST00000225179
RefSeq Acc Id: ENSMUSP00000153202   ⟸   ENSMUST00000225987
RefSeq Acc Id: ENSMUSP00000153310   ⟸   ENSMUST00000225576
RefSeq Acc Id: ENSMUSP00000153376   ⟸   ENSMUST00000224480
RefSeq Acc Id: XP_036013865   ⟸   XM_036157972
- Peptide Label: isoform X2
- UniProtKB: Q8CIH3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036013864   ⟸   XM_036157971
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036013866   ⟸   XM_036157973
- Peptide Label: isoform X3
- UniProtKB: E9PUA2 (UniProtKB/TrEMBL)
Protein Domains
CCHC-type   PAP-associated

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5BLK4-F1-model_v2 AlphaFold Q5BLK4 1-1491 view protein structure

Promoters
RGD ID:8680568
Promoter ID:EPDNEW_M18315
Type:initiation region
Name:Zcchc6_1
Description:Mus musculus zinc finger, CCHC domain containing 6 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381359,823,110 - 59,823,170EPDNEW
RGD ID:6824490
Promoter ID:MM_KWN:14354
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Liver
Transcripts:UC007QVF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361359,911,386 - 59,911,886 (-)MPROMDB
RGD ID:6824492
Promoter ID:MM_KWN:14355
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000079643,   NM_153538,   UC007QVH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361359,924,136 - 59,924,797 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2387179 AgrOrtholog
Ensembl Genes ENSMUSG00000035248 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000071623 ENTREZGENE
  ENSMUSP00000071623.5 UniProtKB/TrEMBL
  ENSMUSP00000153202.2 UniProtKB/TrEMBL
  ENSMUSP00000153310.2 UniProtKB/TrEMBL
  ENSMUSP00000153353.2 UniProtKB/TrEMBL
  ENSMUSP00000153376.2 UniProtKB/TrEMBL
  ENSMUSP00000153412.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000071703 ENTREZGENE
  ENSMUST00000071703.6 UniProtKB/TrEMBL
  ENSMUST00000224480 ENTREZGENE
  ENSMUST00000224480.2 UniProtKB/TrEMBL
  ENSMUST00000225179.2 UniProtKB/TrEMBL
  ENSMUST00000225241.2 UniProtKB/TrEMBL
  ENSMUST00000225576.2 UniProtKB/TrEMBL
  ENSMUST00000225987.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.460.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro NT_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAP_assoc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUTase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CCHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CCHC_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:214290 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2387179 ENTREZGENE
NCBI Gene 214290 ENTREZGENE
Pfam PAP_assoc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUTase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-CCHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tut7 PhenoGen
PROSITE ZF_CCHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
SMART ZnF_C2HC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57756 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81301 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A286YCY9_MOUSE UniProtKB/TrEMBL
  A0A286YD79_MOUSE UniProtKB/TrEMBL
  A0A286YDD7_MOUSE UniProtKB/TrEMBL
  A0A286YDH2_MOUSE UniProtKB/TrEMBL
  A0A286YDR9_MOUSE UniProtKB/TrEMBL
  E9PUA2 ENTREZGENE, UniProtKB/TrEMBL
  Q5BLK4 ENTREZGENE
  Q8CD38_MOUSE UniProtKB/TrEMBL
  Q8CIH3 ENTREZGENE
  TUT7_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary A1A4B1 UniProtKB/Swiss-Prot
  Q3V3V7 UniProtKB/Swiss-Prot
  Q8CIH3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-29 Tut7  terminal uridylyl transferase 7  Zcchc6  zinc finger, CCHC domain containing 6  Symbol and/or name change 5135510 APPROVED