Cytl1 (cytokine-like 1) - Rat Genome Database

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Gene: Cytl1 (cytokine-like 1) Mus musculus
Analyze
Symbol: Cytl1
Name: cytokine-like 1
RGD ID: 1615683
MGI Page MGI
Description: Involved in several processes, including cartilage homeostasis; chondroitin sulfate proteoglycan biosynthetic process; and regulation of transcription, DNA-templated. Is expressed in several structures, including aorta; limb; respiratory system; sensory organ; and skeleton. Orthologous to human CYTL1 (cytokine like 1); INTERACTS WITH 17beta-estradiol; 3,4-methylenedioxymethamphetamine; 4-hydroxyphenyl retinamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 4930443F05Rik; 4Cytl1; C17; Cyt1; cytokine like 1; cytokine-like protein 1; Gm147
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39537,892,863 - 37,897,164 (+)NCBIGRCm39mm39
GRCm39 Ensembl537,892,863 - 37,897,164 (+)Ensembl
GRCm38537,735,519 - 37,739,820 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl537,735,519 - 37,739,820 (+)EnsemblGRCm38mm10GRCm38
MGSCv37538,126,758 - 38,131,059 (+)NCBIGRCm37mm9NCBIm37
MGSCv36538,023,768 - 38,028,069 (+)NCBImm8
Celera535,191,397 - 35,195,691 (+)NCBICelera
Cytogenetic Map5B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15031101   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17644814   PMID:20562862  
PMID:21267068   PMID:21652695   PMID:21795542   PMID:21799806   PMID:24738827   PMID:26273529   PMID:27835665   PMID:30718470   PMID:31823178   PMID:32736681  


Genomics

Comparative Map Data
Cytl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39537,892,863 - 37,897,164 (+)NCBIGRCm39mm39
GRCm39 Ensembl537,892,863 - 37,897,164 (+)Ensembl
GRCm38537,735,519 - 37,739,820 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl537,735,519 - 37,739,820 (+)EnsemblGRCm38mm10GRCm38
MGSCv37538,126,758 - 38,131,059 (+)NCBIGRCm37mm9NCBIm37
MGSCv36538,023,768 - 38,028,069 (+)NCBImm8
Celera535,191,397 - 35,195,691 (+)NCBICelera
Cytogenetic Map5B3NCBI
CYTL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl45,014,586 - 5,019,458 (-)EnsemblGRCh38hg38GRCh38
GRCh3845,014,586 - 5,019,470 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3745,016,313 - 5,021,185 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3645,067,214 - 5,072,098 (-)NCBINCBI36hg18NCBI36
Build 3445,134,387 - 5,139,269NCBI
Celera44,913,525 - 4,918,414 (-)NCBI
Cytogenetic Map4p16.2NCBI
HuRef44,952,728 - 4,957,617 (-)NCBIHuRef
CHM1_145,014,307 - 5,019,195 (-)NCBICHM1_1
Cytl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21473,053,876 - 73,058,886 (-)NCBI
Rnor_6.0 Ensembl1477,805,130 - 77,810,147 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01477,805,137 - 77,810,147 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01477,783,865 - 77,788,875 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41478,349,878 - 78,354,888 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1472,016,197 - 72,021,228 (-)NCBICelera
Cytogenetic Map14q21NCBI
Cytl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555144,826,755 - 4,831,951 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555144,826,792 - 4,831,424 (+)NCBIChiLan1.0ChiLan1.0
CYTL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.145,092,567 - 5,097,456 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl45,092,144 - 5,098,092 (-)Ensemblpanpan1.1panPan2
CYTL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1370,354,099 - 70,358,521 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl370,354,090 - 70,359,128 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha372,904,811 - 72,909,240 (-)NCBI
ROS_Cfam_1.0371,113,282 - 71,117,712 (-)NCBI
UMICH_Zoey_3.1370,384,321 - 70,388,747 (-)NCBI
UNSW_CanFamBas_1.0370,544,734 - 70,549,165 (-)NCBI
UU_Cfam_GSD_1.0370,929,545 - 70,933,976 (-)NCBI
Cytl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528563,807,132 - 63,813,091 (-)NCBI
SpeTri2.0NW_00493647717,508,833 - 17,512,608 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYTL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl85,455,671 - 5,460,866 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.185,455,576 - 5,460,861 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.285,266,914 - 5,272,133 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CYTL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12741,187,925 - 41,192,768 (-)NCBI
ChlSab1.1 Ensembl2741,187,828 - 41,192,690 (-)Ensembl
Vero_WHO_p1.0NW_02366604787,982,211 - 87,987,014 (-)NCBI
Cytl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475521,968,360 - 21,972,986 (-)NCBI

Position Markers
Cytl1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
cM Map5 UniSTS
cM Map5 UniSTS
Cytl1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5B3UniSTS
cM Map5 UniSTS
Cytl1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5B3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5517952239179654Mouse
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5791911941919241Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5884069387693978Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5886594940372526Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51340580847405808Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51547674049476846Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52052964954529790Mouse
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52150995255510060Mouse
11537368Hmtb10_mhemostasis and thrombosis 10 (mouse)52189582554342976Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52189582564649236Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526236236138457140Mouse
1300701Cd8ts1_mCD8 T cell subset 1 (mouse)Not determined52705800661058109Mouse
1301555Alcp10_malcohol preference locus 10 (mouse)Not determined53086693364867138Mouse
1301403Alcp9_malcohol preference locus 9 (mouse)Not determined53086693364867138Mouse
11353827Hplq1_mhot plate latency 1 (mouse)53141311665413116Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined31975890100630065Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined31975890100630065Mouse
10043995Hbnr9_mHeligmosomoides bakeri nematode resistance 9 (mouse)Not determined53333132567331534Mouse
1301845Lxw4_mlupus BXSB x NZW 4 (mouse)Not determined53553712069537252Mouse
11049558Lmr24b_mleishmaniasis resistance 24b (mouse)53553712069537252Mouse
11049559Lmr24c_mleishmaniasis resistance 24c (mouse)53553712069537252Mouse
11049561Lmr24e_mleishmaniasis resistance 24e (mouse)53553712069537252Mouse
1301223Hdlq7_mHDL QTL 7 (mouse)Not determined53569722669697372Mouse
13464252Ahl10_mage related hearing loss, early onset 10 (mouse)53569722669697372Mouse
4141647Hrvhf1_mheart rate variability, high frequency 1 (mouse)Not determined3627608170276081Mouse
1301170Lith13_mlithogenic gene 13 (mouse)Not determined53633714470337256Mouse
36049766Ars22_mantibody response to SARS-CoV 22, day 29, IgG3 (mouse)53680000045300000Mouse
36049767Ars23_mantibody response to SARS-CoV 23, day 29, Total IgG (mouse)53680000045300000Mouse
36049768Ars24_mantibody response to SARS-CoV 24, 4 days post-rechallenge, IgG3 (mouse)53680000045300000Mouse
36049769Ars13_mantibody response to SARS-CoV 13, day 7, IgG2a+IgG2c (mouse)53680000045300000Mouse
36049770Ars14_mantibody response to SARS-CoV 14, day 7, IgG3 (mouse)53680000045300000Mouse
36049771Ars15_mantibody response to SARS-CoV 15, day 7, IgM (mouse)53680000045300000Mouse
36049772Ars20_mantibody response to SARS-CoV 20, day 15, Total IgG (mouse)53680000045300000Mouse
36049773Ars21_mantibody response to SARS-CoV 21, day 29, IgG2a+IgG2c (mouse)53680000045300000Mouse
36049774Ars16_mantibody response to SARS-CoV 16, day 7, Total IgG (mouse)53680000045300000Mouse
36049775Ars17_mantibody response to SARS-CoV 17, day 15, IgG2a+IgG2c (mouse)53680000045300000Mouse
36049776Ars18_mantibody response to SARS-CoV 18, day 15, IgG3 (mouse)53680000045300000Mouse
36049777Ars19_mantibody response to SARS-CoV 19, day 15, IgM (mouse)53680000045300000Mouse
35673310Ari4_mantibody response to influenza 4, day 15-45, IgG2b (mouse)53680000045300000Mouse
1300926Hpi2_mhepatic PMN infiltration 2 (mouse)Not determined53742414464649236Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537424144112317856Mouse
13464246Ahl11_mage related hearing loss, early onset 11 (mouse)53748643571486554Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:213
Count of miRNA genes:168
Interacting mature miRNAs:189
Transcripts:ENSMUST00000073554
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000073554   ⟹   ENSMUSP00000073244
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl537,735,519 - 37,739,820 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201048
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl537,737,280 - 37,739,815 (+)Ensembl
RefSeq Acc Id: NM_001081106   ⟹   NP_001074575
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39537,892,863 - 37,897,164 (+)NCBI
GRCm38537,735,519 - 37,739,820 (+)ENTREZGENE
MGSCv37538,126,758 - 38,131,059 (+)RGD
Celera535,191,397 - 35,195,691 (+)RGD
cM Map5 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001074575 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH63103 (Get FASTA)   NCBI Sequence Viewer  
  AAI16225 (Get FASTA)   NCBI Sequence Viewer  
  AAI16226 (Get FASTA)   NCBI Sequence Viewer  
  ABL07597 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001074575   ⟸   NM_001081106
- Peptide Label: precursor
- UniProtKB: A1E5L0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000073244   ⟸   ENSMUST00000073554

Promoters
RGD ID:6886606
Promoter ID:EPDNEW_M6736
Type:multiple initiation site
Name:Cytl1_1
Description:Mus musculus cytokine-like 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38537,735,538 - 37,735,598EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2684993 AgrOrtholog
Ensembl Genes ENSMUSG00000062329 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000073244 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000073554 ENTREZGENE, UniProtKB/TrEMBL
InterPro CYTL1 UniProtKB/TrEMBL
KEGG Report mmu:231162 UniProtKB/TrEMBL
MGD MGI:2684993 ENTREZGENE
NCBI Gene 231162 ENTREZGENE
PANTHER PTHR15974 UniProtKB/TrEMBL
Pfam CYTL1 UniProtKB/TrEMBL
PhenoGen Cytl1 PhenoGen
UniProt A1E5L0 ENTREZGENE, UniProtKB/TrEMBL
  Q0VG51_MOUSE UniProtKB/TrEMBL
  Q6P536_MOUSE UniProtKB/TrEMBL