Or4c106 (olfactory receptor family 4 subfamily C member 106) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Or4c106 (olfactory receptor family 4 subfamily C member 106) Mus musculus
Analyze
No known orthologs.
Symbol: Or4c106
Name: olfactory receptor family 4 subfamily C member 106
RGD ID: 1615606
MGI Page MGI
Description: Predicted to enable olfactory receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GA_x6K02T2Q125-50322618-50323547; MOR232; MOR232-6; olfactory receptor 1204; olfactory receptor MOR232-6; Olfr1204
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39288,682,296 - 88,683,225 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl288,679,636 - 88,688,264 (+)EnsemblGRCm39 Ensembl
GRCm38288,851,952 - 88,852,881 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl288,849,292 - 88,857,920 (+)EnsemblGRCm38mm10GRCm38
MGSCv37288,692,109 - 88,693,038 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36288,652,791 - 88,653,720 (+)NCBIMGSCv36mm8
Celera290,427,324 - 90,428,253 (+)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11802173   PMID:11875048   PMID:14611657   PMID:21873635   PMID:32295537  


Genomics

Variants

.
Variants in Or4c106
18 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:91
Count of miRNA genes:88
Interacting mature miRNAs:88
Transcripts:ENSMUST00000078631
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
4141406Alpq2_malcohol preference QTL 2 (mouse)Not determined25752411791524288Mouse
12738429Lfibq18_mliver fibrosis QTL 18 (mouse)25791999191919991Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
10044002Hdl7_mHDL level 7 (mouse)Not determined26300595497006113Mouse
10053681Lith24_mlithogenic gene 24 (mouse)Not determined26300595497006113Mouse
1301405Etohr_methanol response acute (mouse)Not determined26300595497006113Mouse
1301703Bomd3_mbone mineral density 3 (mouse)Not determined26300595497006113Mouse
1300662Etohila_methanol induced locomotor activity (mouse)Not determined26300595497006113Mouse
1301048Actre2_mactivity response to ethanol 2 (mouse)Not determined26300595497006113Mouse
1301873Hsl1_mhyperoxia susceptibility locus 1 (mouse)Not determined26357015497570301Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
1301660Iba1_minduction of brown adipocytes 1 (mouse)Not determined267647887101648142Mouse
13463482Mchq17_mmean corpuscular hemoglobin QTL 17 (mouse)267647887101648142Mouse
1301882Etohc2_methanol consumption 2 (mouse)Not determined268724269102724407Mouse
1301948Elsgp3_melevated serum gp70 3 (mouse)Not determined268724269102724407Mouse
4142088Parms1_mpatched associated RMS 1 (mouse)Not determined74524117114123532Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
1301374Cplaq7_mcircadian period of locomotor activity 7 (mouse)Not determined276421483110421651Mouse
4141657Mohg1_mmodifier of hg 1 (mouse)Not determined276678758103095823Mouse
10043894Bw22_mbody weight QTL 22 (mouse)Not determined280895334114895334Mouse
15092054Egrme5_mearly growth rate, maternal effect 5 (mouse)282190187118004745Mouse
1558901Skmw8_mskeletal muscle weight 8 (mouse)Not determined284008488118008593Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
1301897Scc2_mcolon tumor susceptibility 2 (mouse)Not determined28572426990410991Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
11049565Lmr28g_mleishmaniasis resistance 28g (mouse)286095716120095823Mouse
11038697Ltpr2d_mLeishmania tropica response 2d (mouse)286095716120095823Mouse
11038698Ltpr2c_mLeishmania tropica response 2c (mouse)286095716120095823Mouse
1300852Lmr14_mleishmaniasis resistance 14 (mouse)Not determined286095716120095823Mouse
1301834Bits1_mbitterness sensitivity 1 (mouse)Not determined287440643121440778Mouse
11532731Sluc31a_msusceptibility to lung cancer 31a (mouse)288015003122015170Mouse
4142223Femwf4_mfemur work to failure 4 (mouse)Not determined88143423122143570Mouse

Markers in Region
UniSTS:489356  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38288,851,952 - 88,852,881UniSTSGRCm38
GRCm38288,817,173 - 88,818,102UniSTSGRCm38
MGSCv37288,692,109 - 88,693,038UniSTSGRCm37
MGSCv37288,657,330 - 88,658,259UniSTSGRCm37
Celera290,395,073 - 90,396,002UniSTS
Celera290,427,324 - 90,428,253UniSTS
Cytogenetic Map2E1UniSTS
UniSTS:491642  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38288,851,918 - 88,852,941UniSTSGRCm38
GRCm38288,817,139 - 88,818,162UniSTSGRCm38
MGSCv37288,692,075 - 88,693,098UniSTSGRCm37
MGSCv37288,657,296 - 88,658,319UniSTSGRCm37
Celera290,395,039 - 90,396,062UniSTS
Celera290,427,290 - 90,428,313UniSTS
Cytogenetic Map2E1UniSTS
UniSTS:495602  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38288,851,899 - 88,852,941UniSTSGRCm38
MGSCv37288,692,056 - 88,693,098UniSTSGRCm37
Celera290,427,271 - 90,428,313UniSTS
Cytogenetic Map2E1UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000078631   ⟹   ENSMUSP00000077701
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl288,682,296 - 88,683,225 (+)Ensembl
GRCm38.p6 Ensembl288,851,952 - 88,852,881 (+)Ensembl
RefSeq Acc Id: ENSMUST00000213283   ⟹   ENSMUSP00000150111
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl288,679,636 - 88,688,264 (+)Ensembl
GRCm38.p6 Ensembl288,849,292 - 88,857,920 (+)Ensembl
RefSeq Acc Id: NM_146463   ⟹   NP_666674
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39288,682,296 - 88,683,225 (+)NCBI
GRCm38288,851,952 - 88,852,881 (+)ENTREZGENE
MGSCv37288,692,109 - 88,693,038 (+)RGD
Celera290,427,324 - 90,428,253 (+)RGD
cM Map2 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_666674 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAL61298 (Get FASTA)   NCBI Sequence Viewer  
  AAP71608 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000077701
  ENSMUSP00000077701.2
  ENSMUSP00000150111.2
Reference Protein Sequences
RefSeq Acc Id: NP_666674   ⟸   NM_146463
- UniProtKB: Q7TR10 (UniProtKB/TrEMBL),   Q8VF99 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000150111   ⟸   ENSMUST00000213283
RefSeq Acc Id: ENSMUSP00000077701   ⟸   ENSMUST00000078631
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TR10-F1-model_v2 AlphaFold Q7TR10 1-309 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3031038 AgrOrtholog
Ensembl Genes ENSMUSG00000061798 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000078631 ENTREZGENE
  ENSMUST00000078631.2 UniProtKB/TrEMBL
  ENSMUST00000213283.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report mmu:258455 UniProtKB/TrEMBL
MGD MGI:3031038 ENTREZGENE
NCBI Gene 258455 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or4c106 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt Q7TR10 ENTREZGENE, UniProtKB/TrEMBL
  Q8VF99 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-24 Or4c106  olfactory receptor family 4 subfamily C member 106  Olfr1204  olfactory receptor 1204  Symbol and/or name change 5135510 APPROVED