Zfp213 (zinc finger protein 213) - Rat Genome Database

Name: Zfp213
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Zfp213 (zinc finger protein 213) Mus musculus

Analyze

Symbol:

Zfp213

Name:

zinc finger protein 213

RGD ID:

1615452

MGI Page

MGI

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in central nervous system and genitourinary system. Orthologous to human ZNF213 (zinc finger protein 213).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

BC038178; D17Ertd197; D17Ertd197e; zin finger protein 213

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF213 (zinc finger protein 213)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Rattus norvegicus (Norway rat):	Zfp213 (zinc finger protein 213)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znf213 (zinc finger protein 213)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF213 (zinc finger protein 213)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF213 (zinc finger protein 213)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf213 (zinc finger protein 213)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF213 (zinc finger protein 213)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF213 (zinc finger protein 213)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf213 (zinc finger protein 213)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Zfp213 (zinc finger protein 213)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZNF213 (zinc finger protein 213)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	23,775,741 - 23,783,200 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	23,775,741 - 23,783,212 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	23,556,767 - 23,564,226 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	23,556,767 - 23,564,238 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	23,693,734 - 23,701,193 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	23,284,392 - 23,291,751 (-)	NCBI		MGSCv36	mm8
Celera	17	24,060,959 - 24,068,537 (-)	NCBI		Celera
Cytogenetic Map	17	A3.3	NCBI
cM Map	17	11.67	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

epilepsy (ISO)

genetic disease (ISO)

idiopathic generalized epilepsy (ISO)

short-rib thoracic dysplasia 9 with or without polydactyly (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-palmitoylglycerol (ISO)

acrylamide (ISO)

amphetamine (ISO)

aristolochic acid A (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

carbon nanotube (EXP)

chlorpyrifos (EXP)

choline (EXP)

Cuprizon (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

folic acid (EXP)

gentamycin (ISO)

iron dichloride (ISO)

L-methionine (EXP)

ochratoxin A (ISO)

paracetamol (ISO)

sunitinib (ISO)

temozolomide (ISO)

tetrachloromethane (ISO)

thioacetamide (ISO)

titanium dioxide (EXP)

urethane (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of transcription by RNA polymerase II (IBA)

Molecular Function

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:10725249	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:14610273	PMID:15618518	PMID:15782199	PMID:16141072
PMID:16141073	PMID:17967808	PMID:18287559	PMID:18799693	PMID:21267068	PMID:21873635

Genomics

Comparative Map Data

Zfp213
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	23,775,741 - 23,783,200 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	23,775,741 - 23,783,212 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	23,556,767 - 23,564,226 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	23,556,767 - 23,564,238 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	23,693,734 - 23,701,193 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	23,284,392 - 23,291,751 (-)	NCBI		MGSCv36	mm8
Celera	17	24,060,959 - 24,068,537 (-)	NCBI		Celera
Cytogenetic Map	17	A3.3	NCBI
cM Map	17	11.67	NCBI

ZNF213
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	3,135,029 - 3,142,804 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	3,129,777 - 3,142,804 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	3,185,030 - 3,192,805 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	3,125,140 - 3,132,806 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	3,125,139 - 3,132,805	NCBI
Celera	16	3,390,538 - 3,398,418 (+)	NCBI		Celera
Cytogenetic Map	16	p13.3	NCBI
HuRef	16	3,156,584 - 3,164,469 (+)	NCBI		HuRef
CHM1_1	16	3,185,012 - 3,192,765 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	3,161,505 - 3,169,417 (+)	NCBI		T2T-CHM13v2.0

Zfp213
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	13,096,995 - 13,103,918 (-)	NCBI		GRCr8
mRatBN7.2	10	12,592,368 - 12,599,296 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	12,592,368 - 12,599,281 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	17,335,235 - 17,342,154 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	16,824,032 - 16,830,951 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	12,325,144 - 12,332,048 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	12,885,533 - 12,892,464 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	12,885,533 - 12,892,446 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	12,706,830 - 12,713,756 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	12,822,908 - 12,829,821 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	12,817,371 - 12,829,821 (-)	NCBI
Celera	10	12,288,827 - 12,295,740 (-)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

Znf213
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	14,218,810 - 14,228,151 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955442	14,217,982 - 14,228,064 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF213
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	3,679,743 - 3,687,399 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	7,464,424 - 7,472,231 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	2,076,602 - 2,084,462 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	3,255,435 - 3,263,132 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	3,255,435 - 3,263,132 (+)	Ensembl	panpan1.1		panPan2

ZNF213
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	38,071,902 - 38,075,553 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	38,070,991 - 38,075,553 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	39,313,712 - 39,317,276 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	38,383,748 - 38,387,312 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	38,382,857 - 38,389,321 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	38,069,816 - 38,073,379 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	38,042,264 - 38,045,828 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	38,517,968 - 38,521,531 (-)	NCBI		UU_Cfam_GSD_1.0

Znf213
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	105,648,787 - 105,655,030 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936694	1,055,346 - 1,058,878 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936694	1,054,433 - 1,060,659 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF213
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	39,073,677 - 39,079,365 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	39,073,673 - 39,088,789 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	40,461,273 - 40,475,142 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF213
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	2,865,131 - 2,878,473 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	2,873,071 - 2,877,144 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666068	27,952,532 - 27,960,150 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf213
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624824	869,450 - 873,151 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624824	867,742 - 873,996 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Zfp213
244 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	417
Count of miRNA genes:	298
Interacting mature miRNAs:	332
Transcripts:	ENSMUST00000095606
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357902	Obq19_m	obesity QTL 19 (mouse)			Not determined		17	1	25662076	Mouse
12910982	Pifs2_m	peptide-induced fatal syndrome 2 (mouse)					17	1	26189355	Mouse
1357743	Lith3_m	lithogenic gene 3 (mouse)			Not determined		17	1	26194456	Mouse
1301615	Cfld3_m	cystic fibrosis lung disease 3 (mouse)			Not determined		17	1	27081639	Mouse
1300613	Pcyts4_m	plasmacytoma susceptibility 4 (mouse)			Not determined		17	1	27081639	Mouse
1302100	Circp2_m	circadian photosensitivity 2 (mouse)			Not determined		17	1	29198453	Mouse
12910527	Nrq1a_m	noise-induced hearing loss resistant QTL 1a (mouse)					17	1	29198453	Mouse
12910528	Nrq1_m	noise-induced hearing loss resistant QTL 1 (mouse)					17	1	29198453	Mouse
13524851	Asrq8_m	acoustic startle response 8 (mouse)					17	1	31030170	Mouse
10412276	Leci2_m	leukocyte endothelial cell interactions 2 (mouse)			Not determined		17	3348175	37348299	Mouse
1357680	Idd23_m	insulin dependent diabetes susceptibility 23 (mouse)			Not determined		17	3974890	26401133	Mouse
1300890	Bhr3_m	bronchial hyperresponsiveness 3 (mouse)			Not determined		17	3974890	48866091	Mouse
1301327	Lmr7_m	leishmaniasis resistance 7 (mouse)			Not determined		17	4854752	27715939	Mouse
4141215	Mnic1_m	macronutrient intake, carbohydrate 1 (mouse)			Not determined			4854752	45670266	Mouse
1300706	Alan1_m	alloantigen response 1 (mouse)			Not determined		17	4854752	46469702	Mouse
1357789	Kdnw3_m	kidney weight 3 (mouse)			Not determined		17	4854752	47885665	Mouse
4141272	Tfv1_m	total food volume 1 (mouse)			Not determined			4854752	65637357	Mouse
10043949	Pbft7_m	percent body fat 7 (mouse)			Not determined		17	6893936	40893936	Mouse
4141608	Phl1_m	progressive hearing loss 1 (mouse)			Not determined		17	7875843	29487423	Mouse
1301935	Skull24_m	skull morphology 24 (mouse)			Not determined		17	8584914	42585149	Mouse
1300787	Cd8mts5_m	CD8 memory T cell subset 5 (mouse)			Not determined		17	8584914	42585149	Mouse
1301338	Lmr1_m	leishmaniasis resistance 1 (mouse)			Not determined		17	10081340	86996400	Mouse
1302028	Asbb3_m	autoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)			Not determined		17	10878119	44878219	Mouse
4142342	Lfnq4_m	lung function QTL 4 (mouse)			Not determined			11206484	39364059	Mouse
4141067	Hbnr2_m	Heligmosomoides bakeri nematode resistance 2 (mouse)			Not determined			11885971	45886119	Mouse
14747010	Mancz14_m	mandible centroid size 14 (mouse)					17	11998184	45998184	Mouse
4142507	Obrq13_m	obesity resistance QTL 13 (mouse)			Not determined			12198329	25076769	Mouse
4142150	Stheal11_m	soft tissue heal 11 (mouse)			Not determined		17	12286211	83361768	Mouse
12904946	Tammq8_m	tibialis anterior muscle mass QTL 8 (mouse)					17	12451787	46451787	Mouse
1558807	Ceat1_m	chronic experimental autoimmune thyroiditis 1 (mouse)			Not determined		17	12636682	26401133	Mouse
13524847	Asrq8a_m	acoustic startle response 8a (mouse)					17	12646961	46646961	Mouse
11081168	Tir7_m	trypanosome infection response 7 (mouse)					17	14123372	48123496	Mouse
1300995	Fembrs4_m	femur breaking strength 4 (mouse)			Not determined		17	15061652	49061760	Mouse
1300914	Pcir4_m	periosteal circumference 4 (mouse)			Not determined		17	15061652	49061760	Mouse
1302070	Tbbmd7_m	total body bone mineral density 7 (mouse)			Not determined		17	15061652	49061760	Mouse
1558886	Lgth9_m	body length 9 (mouse)			Not determined		17	15061652	49061760	Mouse
1302140	Wta4_m	weight adult 4 (mouse)			Not determined		17	16819721	50819843	Mouse
1302152	Skull25_m	skull morphology 25 (mouse)			Not determined		17	16819721	50819843	Mouse
1302038	Radpf1_m	radiation pulmonary fibrosis 1 (mouse)			Not determined		17	16835455	33819843	Mouse
10412083	Sm2_m	susceptibility to Schistosoma mansoni infection 2 (mouse)			Not determined		17	17029943	51030078	Mouse
13452396	Leusq3_m	leucocytosis susceptibility QTL 3 (mouse)					17	17462208	51462345	Mouse
13452399	Leusq6_m	leucocytosis susceptibility QTL 6 (mouse)					17	17462208	51462345	Mouse
10412214	Sxbq3_m	SGC/Knj cross B6 QTL 3 (mouse)			Not determined		17	17462208	51462345	Mouse
1300535	Char3_m	P. chabaudi malaria resistance QTL 3 (mouse)			Not determined		17	17462208	51462345	Mouse
1301840	Ssial4_m	susceptibility to sialadenitiss 4 (mouse)			Not determined		17	18175412	52178214	Mouse
1301331	Lbw1_m	lupus NZB x NZW 1 (mouse)			Not determined		17	18418357	52420983	Mouse
1301056	Pas2_m	pulmonary adenoma susceptibility 2 (mouse)			Not determined		17	18422141	52424327	Mouse
15039354	Nmrs36_m	NAFLD-associated magnetic resonance shift 36 (mouse)					17	19145025	53145025	Mouse
12910769	Rtmq1_m	renal tumor modifier QTL 1 (mouse)					17	22900036	25721472	Mouse

Markers in Region

RH126597

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	17	23,556,876 - 23,557,078	UniSTS	GRCm38
MGSCv37	17	23,693,843 - 23,694,045	UniSTS	GRCm37
Celera	17	24,061,068 - 24,061,270	UniSTS
Cytogenetic Map	17	A3.3	UniSTS
cM Map	17	11.0	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001033496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC154766	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK133902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK147992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK171979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK183714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK185602	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK186649	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK211717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK216787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC038178	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC150777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BX528154	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466606	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CJ184116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000095606 ⟹ ENSMUSP00000093266

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	23,775,741 - 23,783,212 (-)	Ensembl
GRCm38.p6 Ensembl	17	23,556,767 - 23,564,238 (-)	Ensembl

RefSeq Acc Id:

NM_001033496 ⟹ NP_001028668

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	17	23,775,741 - 23,783,200 (-)	NCBI
GRCm38	17	23,556,767 - 23,564,226 (-)	ENTREZGENE
MGSCv37	17	23,693,734 - 23,701,193 (-)	RGD
Celera	17	24,060,959 - 24,068,537 (-)	RGD
cM Map	17		ENTREZGENE

Sequence:

show sequence

TGCCCCGGGCGCTGCTGGGGAAGCGCCGAGCTCCCGCGCGGCTCTGGGCGGTGTGTCCTGGGGG
CGGGACCGGCGCGTTGCGCAGACCGGATCCTGCGGATTCGGCGCTCGAGGCGCCTGCGGGAGAG
GACAAGTTCCTGGGAGCAGCGCGGGCTGCCGGCGCCTCCGGGTTCTCCGGGTCTGCCACGCGGA
GCCCGGCCACCCTCACCAGGCTGCTGGGGACCGTCCCCATTTCCCACGTCCTGCCGAGCGACCC
TGGCAAGTGTGTCCTGATGCCAACCCACTCGTCACAGAGAATCCCTCTAGGACACTGAAAGGCT
CAGCTCTGGAGCCTCAAGCTAAGGCTGACCAGCCCTGAGCCTTAGGCCAGGGGCATGGCATCCC
TCCAGGAGCTCCAAGACCCTGCTCCCGGGGAGGAGGAAGGACTCATGATTGTGAAGGTGGAAGA
CTGCTCCTGGGAACAGGAGCCTGTCCAGCCGGTGGACAGCCGGGATTCCGAAGCCTGCCGCCAG
CGGTTCCGACAGTTCTGCTTCAGGGATGCGGGTGGACCACACGAAGCCTTCAGCCAGCTGTGGG
AGCTCTGTTGCCGCTGGCTGCGGCCTGAGCTGCACAGCAAGGAGCAGATCCTGGAATTGCTGGT
GCTGGAGCAGTTCCTGGCTGTGCTACCAGGGGAGATCCAAGCCCAGCTTCAGAGACAGCACCTT
GGGAGCGGTGAGGAAGCTGTCGCTTTGGTGGAAGACATACAGAATCAGTCGTTGAAAGCCTGGC
CACAGGATGAGCTCTCAGAGGCGGAGCCGAAGGCAGCAGTCCAGGGACTCCAAGCCACAGGGTC
TCCCCAGAAGACAGGGGTCCAGAAGCAACTCCCTGCACTCCAAGGGCAGCGCAGCCATGCCCAG
CTCCCTGTTCTTAAAGAGCGACAGACAGGAGAGGTGTTGGATGGCTGCTTTGACTCTGCAGTTG
ATCTGCCTGGGAGACCCGAGCTGGGTCGTATCTCCCCATTCCAAAAATCTGGGTCATTGGGAGA
CATCCCTTTCTATTGTTCCCGAGAAGAATGGAGCTCCCTGGACCCTGCTCAGAGGAACCTCTTC
TGGAACATCAAGAGAAAGAACTCGAGGGATGCTGCCCTTGGTTTGAGACCCAAAAGCCAAAAGC
CCCCTGCAGAGGAGGCAGCGACAGCATTGTTGGGACAGACTGAAGTGCCTATGTCCTGGAATCC
CGAGGAGGCTGAGACCGAGGTCTGGGAGAGCGAGAACCCAATGAGGACAGCCCTGGACCCGCTG
GTGGGAGCGCGTCGGGGGCGGCCGCCCACTCACAGGCGCCAGTTTCAGAACTTATTGGCGGAGA
AGCCCCACAGCTGCGCGCAGTGCGGGAAGCGCTTCCGCTGGGGTTCAGACCTCGCCAGGCACCA
GCGCACACACACCGGGGAGAAGCCACACAAGTGCCCTGAATGCGACAAGAGCTTCCGCAGCTCT
TCTGACCTAGTGCGCCACCAGGGCGTGCACACGGGCGAGAAGCCCTTCTCCTGTTCCGAATGTG
GCAAGAGCTTTAGCCGGAGCGCCTACCTGGCTGACCACCAGCGCATCCACACGGGCGAGAAGCC
CTTCAGCTGCAGCGAGTGTGGCAAGAGCTTCGCACTGCGCTCCTACCTGCTAGACCACAGGCGT
GTGCACACGGGTGAGCGGCCATTCGGCTGTGGGGAGTGTGACAAGAGTTTCAAGCAGCGTGCAC
ACCTCATTGCGCACCAGAGCTTACACTCAAAGATGGCCCAACCTGTGGGGTGAGCCGATGGTGG
GACCTGAGCAGCACCCCCCACCTGCCCGTACCCCGGCCCTCCAGGGGGACACTTCCTGTGACTC
TCACAGAATCTTTTCCTTCCCCCTGGGGATTCATCGCTCACCTGTGACCACTGCCAGCCTGTCA
AAGGGACACAAGGCCCCCTTTACTTTGACCTGGCCTGCCTGCTCCCAGGATCCTGCCACACGTC
TCTCCCTTTCCTGCTCTGGATTTCTTTTACTTGGTTCCTGGAGCTGCAGTTGCCCTTTGAGGAT
CACGTGATATTTGGGCTCAGGCAGGACCTAGGGTTTTCCAGAACCCTCCAGCCTTGCTTGGGCA
GAGGCTCTTTGTTTTCTACTTTCTTATGTGGACCCATCAGCCTGGCTAAGCCTCTGCTCAGCCT
ACTTGTGCCTTCCAGTGGGGACTGGCCTCCATCCTCAGGGCCTGCTGTGGTTTGGCCTTGGGAA
GGACTAGGCTCACACTAATGGGGATTTAGGTCCTGGGTTCCAGCACAGTGGCTTCTTGGCCGTC
AGTGTTATCCAGTACCCTTCATACTTCCAACCTGTGACCACTCTGTCATGCCCTGACCCTGGGA
AGCTACCTACTTGTCCTGCTCTGAGCCCCCGAGATACACTGCAGGTCTGGAGGTTAGTGGAGGT
GGTGGCTGTAGCAGCAGGCTGACCAGAGAACATGCAGTCCTCCAGATGTGTGGTTTTTGTTGTA
CTTAACACTACCACTCCATCAGCACTTTGAAGCTGACTCCTCAAGCACTGTATTTCCATGTTTT
TAATCTGCATTGTGTGCAGATTCACATTAACATGGACAGACCATGGACCTTCCGAAAGGGCTCA
GCCCAATGGGTTTCGGAAGAGTTTGAATAAACATGGAAAATTTCCTCTAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001028668	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI50778	(Get FASTA)	NCBI Sequence Viewer
	BAE28274	(Get FASTA)	NCBI Sequence Viewer
	BAE42758	(Get FASTA)	NCBI Sequence Viewer
	EDL22248	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000093266
	ENSMUSP00000093266.4

RefSeq Acc Id:

NP_001028668 ⟸ NM_001033496

- UniProtKB:

E9QAW0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASLQELQDPAPGEEEGLMIVKVEDCSWEQEPVQPVDSRDSEACRQRFRQFCFRDAGGPHEAFS
QLWELCCRWLRPELHSKEQILELLVLEQFLAVLPGEIQAQLQRQHLGSGEEAVALVEDIQNQSL
KAWPQDELSEAEPKAAVQGLQATGSPQKTGVQKQLPALQGQRSHAQLPVLKERQTGEVLDGCFD
SAVDLPGRPELGRISPFQKSGSLGDIPFYCSREEWSSLDPAQRNLFWNIKRKNSRDAALGLRPK
SQKPPAEEAATALLGQTEVPMSWNPEEAETEVWESENPMRTALDPLVGARRGRPPTHRRQFQNL
LAEKPHSCAQCGKRFRWGSDLARHQRTHTGEKPHKCPECDKSFRSSSDLVRHQGVHTGEKPFSC
SECGKSFSRSAYLADHQRIHTGEKPFSCSECGKSFALRSYLLDHRRVHTGERPFGCGECDKSFK
QRAHLIAHQSLHSKMAQPVG

hide sequence

RefSeq Acc Id:

ENSMUSP00000093266 ⟸ ENSMUST00000095606

Protein Domains

C2H2-type KRAB SCAN box

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-E9QAW0-F1-model_v2	AlphaFold	E9QAW0	1-468	view protein structure

Promoters

RGD ID:

13674920

Promoter ID:

EPDNEW_M21609

Type:

multiple initiation site

Name:

Zfp213_1

Description:

Mus musculus zinc finger protein 213 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	17	23,564,129 - 23,564,189	EPDNEW

RGD ID:

6828912

Promoter ID:

MM_KWN:22427

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

NM_001033496

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	17	23,700,909 - 23,701,409 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:3053094	AgrOrtholog
Ensembl Genes	ENSMUSG00000071256	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000095606	ENTREZGENE
	ENSMUST00000095606.5	UniProtKB/TrEMBL
Gene3D-CATH	1.10.4020.10	UniProtKB/TrEMBL
	6.10.140.140	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	KRAB_dom_sf	UniProtKB/TrEMBL
	Krueppel-associated_box	UniProtKB/TrEMBL
	SCAN_sf	UniProtKB/TrEMBL
	Tscrpt_reg_SCAN	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	mmu:449521	UniProtKB/TrEMBL
MGD	MGI:3053094	ENTREZGENE
NCBI Gene	449521	ENTREZGENE
PANTHER	GENE 12845-RELATED	UniProtKB/TrEMBL
	TRANSCRIPTIONAL REPRESSOR PROTEIN YY	UniProtKB/TrEMBL
	ZINC FINGER AND SCAN DOMAIN-CONTAINING	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 213	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	SCAN	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
	zf-H2C2_2	UniProtKB/TrEMBL
PhenoGen	Zfp213	PhenoGen
PROSITE	KRAB	UniProtKB/TrEMBL
	SCAN_BOX	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	KRAB	UniProtKB/TrEMBL
	SCAN	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	Krueppel-associated_box	UniProtKB/TrEMBL
	Retrovirus capsid dimerization domain-like	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	B2RX03_MOUSE	UniProtKB/TrEMBL
	E9QAW0	ENTREZGENE, UniProtKB/TrEMBL
	Q3TAB1_MOUSE	UniProtKB/TrEMBL
	Q3UGD5_MOUSE	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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