Gm6548 (predicted gene 6548) - Rat Genome Database

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Gene: Gm6548 (predicted gene 6548) Mus musculus
Analyze
Symbol: Gm6548
Name: predicted gene 6548
RGD ID: 1615402
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: PROVISIONAL
Previously known as: EG625054
Related Functional Gene: Eef1a1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391779,157,933 - 79,159,973 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1779,158,221 - 79,159,385 (-)EnsemblGRCm39 Ensembl
GRCm381778,850,504 - 78,852,544 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1778,850,792 - 78,851,956 (-)EnsemblGRCm38mm10GRCm38
MGSCv371779,249,844 - 79,251,884 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361778,755,557 - 78,757,463 (-)NCBIMGSCv36mm8
MGSCv361560,899,238 - 60,900,842 (+)NCBIMGSCv36mm8
Celera1783,167,092 - 83,169,181 (-)NCBICelera
Cytogenetic Map17E3NCBI
cM Map1749.56NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12477932   PMID:15782199   PMID:16944949  


Genomics

Variants

.
Variants in Gm6548
108 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:99
Count of miRNA genes:99
Interacting mature miRNAs:99
Transcripts:ENSMUST00000167498
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
26884428Cvht3_mcranial vault height 3, 5 week (mouse)174651092682407429Mouse
1357754Ahl3_mage related hearing loss 3 (mouse)Not determined175020395784204103Mouse
4141879Chlq9_mcirculating hormone level QTL 9 (mouse)Not determined175175842585758612Mouse
1357532Bmch7_mbone mechanical trait 7 (mouse)Not determined175175842585758612Mouse
1357447Heal13_mwound healing/regeneration 13 (mouse)Not determined175710765191107803Mouse
4141758Pstc5_mperiosteal circumference 5 (mouse)Not determined175710765191107803Mouse
4141011Bmd26_mbone mineral density 26 (mouse)Not determined175710765191107803Mouse
1300735Pgia20_mproteoglycan induced arthritis 20 (mouse)Not determined175710765191107803Mouse
12910536Nrq8a_mnoise-induced hearing loss resistant QTL 8a (mouse)175710765191107803Mouse
12910537Nrq8_mnoise-induced hearing loss resistant QTL 8 (mouse)175710765191107803Mouse
4142201Obrq15_mobesity resistance QTL 15 (mouse)Not determined5753444780885776Mouse
4142414Pregq4_mpregnancy QTL 4 (mouse)Not determined175753444793507179Mouse
4141040Hmtb9_mhemostasis and thrombosis rebleeding time 9 (mouse)Not determined5758908991589197Mouse
1301107Scc4_mcolon tumor susceptibility 4 (mouse)Not determined176230101095294699Mouse
11528551Sluc32_msusceptibility to lung cancer 32 (mouse)176230101095294699Mouse
1302017Aliq3_macute lung injury QTL 3 (mouse)Not determined176388554895294699Mouse
1301728Ffal1_mfree fatty acid level 1 (mouse)Not determined176521493895294699Mouse
14928308Manh82_mmandible shape 82 (mouse)176631524395294699Mouse
13464254Ifvrq3_minfluenza virus resistance QTL 3 (mouse)176795765583908089Mouse
4142256Nilac12_mnicotine induced locomotor activity 12 (mouse)Not determined176894131995294699Mouse
11039500Ltpr7c_mLeishmania tropica response 7c (mouse)177070119895294699Mouse
11039498Ltpr7b_mLeishmania tropica response 7b (mouse)177070119895294699Mouse
11039499Ltpr7a_mLeishmania tropica response 7a (mouse)177070119895294699Mouse
11039514Ltpr7_mLeishmania tropica response 7 (mouse)177070119895294699Mouse
1357528Nhdlq3_mnon-HDL QTL 3 (mouse)Not determined177339513295294699Mouse
4141195Nilac11_mnicotine induced locomotor activity 11 (mouse)Not determined177339513295294699Mouse
4141697Hbnr3_mHeligmosomoides bakeri nematode resistance 3 (mouse)Not determined7410765193507179Mouse
1357646Axtq3_manxiety QTL 3 (mouse)Not determined177458908990395270Mouse
1357552Aaj4_manxiety in A/J 4 (mouse)Not determined177458908990395270Mouse

Markers in Region
AI467567  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381778,852,698 - 78,852,806UniSTSGRCm38
MGSCv371779,252,038 - 79,252,146UniSTSGRCm37
Celera1783,169,335 - 83,169,443UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map17E2UniSTS
cM Map1740.0UniSTS
Whitehead/MRC_RH17934.76UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000167498
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1779,158,221 - 79,159,385 (-)Ensembl
GRCm38.p6 Ensembl1778,850,792 - 78,851,956 (-)Ensembl
RefSeq Acc Id: NR_003363
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391779,157,933 - 79,159,973 (-)NCBI
GRCm381778,850,504 - 78,852,544 (-)ENTREZGENE
MGSCv371779,249,844 - 79,251,884 (-)RGD
Celera1783,167,092 - 83,169,181 (-)RGD
cM Map17 ENTREZGENE
Sequence:
Promoters
RGD ID:6828167
Promoter ID:MM_KWN:24234
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:NR_003363
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361779,251,406 - 79,252,272 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000091549 Ensembl
MGD MGI:3644071 ENTREZGENE
NCBI Gene 625054 ENTREZGENE
PhenoGen Gm6548 PhenoGen