Gm16410 (predicted gene 16410) - Rat Genome Database

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Gene: Gm16410 (predicted gene 16410) Mus musculus
Analyze
Symbol: Gm16410
Name: predicted gene 16410
RGD ID: 1615369
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG630216
Related Functional Gene: Fam220a  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X133,389,671 - 133,391,761 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX133,390,119 - 133,390,892 (+)EnsemblGRCm39 Ensembl
GRCm38X134,488,922 - 134,491,012 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX134,489,370 - 134,490,143 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X131,023,461 - 131,025,554 (+)NCBIGRCm37MGSCv37mm9NCBIm37
CeleraX117,367,916 - 117,370,010 (+)NCBICelera
Cytogenetic MapXE3NCBI
cM MapX56.18NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm16410
62 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:66
Count of miRNA genes:65
Interacting mature miRNAs:66
Transcripts:ENSMUST00000094550
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX120993165160213038Mouse
25314309Syncl5_msynaptonemal complex length 5 (mouse)X121909697152582996Mouse
10412164Cmv2_mcytomegalovirus resistance 2 (mouse)Not determinedX125685149159685269Mouse
13824981Svwq2_mseminal vesicle weight QTL 2 (mouse)X128900749153782996Mouse

Markers in Region
AW047776  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385143,564,206 - 143,564,300UniSTSGRCm38
GRCm38X134,490,736 - 134,490,830UniSTSGRCm38
MGSCv375144,325,074 - 144,325,168UniSTSGRCm37
MGSCv37X131,025,275 - 131,025,369UniSTSGRCm37
Celera5140,610,825 - 140,610,919UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map5G2UniSTS
Whitehead/MRC_RH51715.08UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_013048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL672064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000094550
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX133,390,119 - 133,390,892 (+)Ensembl
GRCm38.p6 EnsemblX134,489,370 - 134,490,143 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000070641 Ensembl
MGD MGI:3648382 ENTREZGENE
NCBI Gene 674122 ENTREZGENE
PhenoGen Gm16410 PhenoGen