Gm12592 (predicted gene 12592) - Rat Genome Database

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Gene: Gm12592 (predicted gene 12592) Mus musculus
Analyze
Symbol: Gm12592
Name: predicted gene 12592
RGD ID: 1615217
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39113,255,420 - 3,281,190 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl113,255,426 - 3,281,178 (-)EnsemblGRCm39 Ensembl
GRCm38113,305,420 - 3,331,190 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl113,305,426 - 3,331,178 (-)EnsemblGRCm38mm10GRCm38
MGSCv37113,204,830 - 3,231,181 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera113,795,761 - 3,822,120 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:16141073  


Genomics

Variants

.
Variants in Gm12592
604 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:215
Count of miRNA genes:185
Interacting mature miRNAs:199
Transcripts:ENSMUST00000155332
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse

Markers in Region
AI447519  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38113,308,924 - 3,309,025UniSTSGRCm38
MGSCv37113,208,927 - 3,209,028UniSTSGRCm37
Celera113,799,858 - 3,799,959UniSTS
Cytogenetic Map11A1UniSTS
Whitehead/MRC_RH117.65UniSTS
D11Dcr1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38113,315,493 - 3,315,591UniSTSGRCm38
MGSCv37113,215,496 - 3,215,594UniSTSGRCm37
Celera113,806,431 - 3,806,529UniSTS
Cytogenetic Map11A1UniSTS
cM Map11 UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000155332
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl113,255,426 - 3,281,178 (-)Ensembl
GRCm38.p6 Ensembl113,305,426 - 3,331,178 (-)Ensembl
RefSeq Acc Id: NR_165248
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39113,255,420 - 3,281,190 (-)NCBI
GRCm38113,305,420 - 3,331,190 (-)NCBI
Sequence:
Protein Sequences
GenBank Protein BAC26235 (Get FASTA)   NCBI Sequence Viewer  


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000053263 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000155332 ENTREZGENE
MGD MGI:3649892 ENTREZGENE
NCBI Gene 791413 ENTREZGENE
PhenoGen Gm12592 PhenoGen
RNAcentral URS0001980E48 RNACentral
UniProt Q8CE53_MOUSE UniProtKB/TrEMBL