Nktr (natural killer tumor recognition sequence) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Nktr (natural killer tumor recognition sequence) Mus musculus
Analyze
Symbol: Nktr
Name: natural killer tumor recognition sequence
RGD ID: 1615172
MGI Page MGI
Description: Predicted to have cyclosporin A binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein folding and protein peptidyl-prolyl isomerization. Predicted to localize to cytoplasm and nucleus. Is expressed in extraembryonic component. Orthologous to human NKTR (natural killer cell triggering receptor); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 5330401F18Rik; cyclophilin-related protein; D9Wsu172; D9Wsu172e; natural killer tumor recognition protein; natural-killer cells cyclophilin-related protein; NK-TR protein; NK-tumor recognition protein; peptidyl-prolyl cis-trans isomerase NKTR; PPIase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399121,542,244 - 121,585,908 (+)NCBIGRCm39mm39
GRCm389121,713,881 - 121,756,842 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9121,719,169 - 121,756,843 (+)EnsemblGRCm38mm10GRCm38
MGSCv379121,628,299 - 121,665,959 (+)NCBIGRCm37mm9NCBIm37
MGSCv369121,567,879 - 121,605,539 (+)NCBImm8
Celera9122,192,346 - 122,230,008 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map972.57NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:8211130   PMID:8314596   PMID:8421688   PMID:8641130   PMID:8889548   PMID:9070924   PMID:9344657   PMID:9349522   PMID:9811942   PMID:10331949   PMID:10349636   PMID:10725249  
PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21873635   PMID:23180766  
PMID:30196744   PMID:32325033  


Genomics

Comparative Map Data
Nktr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399121,542,244 - 121,585,908 (+)NCBIGRCm39mm39
GRCm389121,713,881 - 121,756,842 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9121,719,169 - 121,756,843 (+)EnsemblGRCm38mm10GRCm38
MGSCv379121,628,299 - 121,665,959 (+)NCBIGRCm37mm9NCBIm37
MGSCv369121,567,879 - 121,605,539 (+)NCBImm8
Celera9122,192,346 - 122,230,008 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map972.57NCBI
NKTR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl342,600,655 - 42,648,735 (+)EnsemblGRCh38hg38GRCh38
GRCh38342,600,007 - 42,648,735 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37342,642,178 - 42,690,227 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37342,642,147 - 42,690,233 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36342,617,151 - 42,665,237 (+)NCBINCBI36hg18NCBI36
Build 34342,617,109 - 42,665,031NCBI
Celera342,582,557 - 42,630,629 (+)NCBI
Cytogenetic Map3p22.1NCBI
HuRef342,687,709 - 42,735,868 (+)NCBIHuRef
CHM1_1342,593,339 - 42,641,411 (+)NCBICHM1_1
Nktr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28121,380,010 - 121,420,495 (+)NCBI
Rnor_6.0 Ensembl8130,366,775 - 130,393,178 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08130,357,464 - 130,395,425 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08129,548,466 - 129,575,260 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8120,526,082 - 120,554,918 (+)NCBICelera
Cytogenetic Map8q32NCBI
Nktr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542028,150,386 - 28,193,735 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542028,148,040 - 28,193,734 (-)NCBIChiLan1.0ChiLan1.0
NKTR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1343,571,020 - 43,620,555 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl343,571,457 - 43,617,801 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0342,506,135 - 42,556,343 (+)NCBIMhudiblu_PPA_v0panPan3
NKTR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2311,728,994 - 11,778,626 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12311,728,841 - 11,780,306 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Nktr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366952,458,555 - 2,505,556 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NKTR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1326,125,072 - 26,174,540 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11326,125,064 - 26,176,395 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21328,792,191 - 28,844,107 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NKTR
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1224,055,400 - 4,104,947 (+)NCBI
ChlSab1.1 Ensembl224,056,193 - 4,102,182 (+)Ensembl
Nktr
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473077,039,359 - 77,081,204 (-)NCBI

Position Markers
RH124790  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389121,747,982 - 121,748,145UniSTSGRCm38
MGSCv379121,657,100 - 121,657,263UniSTSGRCm37
Celera9122,221,149 - 122,221,312UniSTS
Cytogenetic Map9F4UniSTS
cM Map971.0UniSTS
UniSTS:236288  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389121,717,516 - 121,717,848UniSTSGRCm38
MGSCv379121,626,634 - 121,626,966UniSTSGRCm37
Celera9122,190,681 - 122,191,013UniSTS
Cytogenetic Map9F4UniSTS
cM Map971.0UniSTS
UniSTS:236289  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389121,735,609 - 121,735,756UniSTSGRCm38
MGSCv379121,644,727 - 121,644,874UniSTSGRCm37
Celera9122,208,775 - 122,208,922UniSTS
Cytogenetic Map9F4UniSTS
cM Map971.0UniSTS
D9Wsu172e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389121,747,915 - 121,748,121UniSTSGRCm38
MGSCv379121,657,033 - 121,657,239UniSTSGRCm37
Celera9122,221,082 - 122,221,288UniSTS
Cytogenetic Map9F4UniSTS
cM Map972.0UniSTS
cM Map971.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2344
Count of miRNA genes:822
Interacting mature miRNAs:1147
Transcripts:ENSMUST00000035112, ENSMUST00000182076, ENSMUST00000182086, ENSMUST00000182179, ENSMUST00000182225, ENSMUST00000182311, ENSMUST00000182337, ENSMUST00000182395, ENSMUST00000182503, ENSMUST00000182607, ENSMUST00000182713, ENSMUST00000182763, ENSMUST00000182904, ENSMUST00000183070, ENSMUST00000183207, ENSMUST00000183311
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_010918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004935337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_871176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_871177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC159810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC165080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH006765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CAAA01064851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L04289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000035112   ⟹   ENSMUSP00000035112
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,719,176 - 121,756,843 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182076
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,752,527 - 121,754,356 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182086
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,731,147 - 121,742,672 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182179   ⟹   ENSMUSP00000138437
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,719,410 - 121,748,193 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182225   ⟹   ENSMUSP00000138168
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,719,444 - 121,749,840 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182311   ⟹   ENSMUSP00000138690
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,719,215 - 121,741,152 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182337   ⟹   ENSMUSP00000138164
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,719,827 - 121,731,515 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182395
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,729,398 - 121,731,583 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182503   ⟹   ENSMUSP00000138463
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,750,786 - 121,754,396 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182607
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,751,215 - 121,752,647 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182713   ⟹   ENSMUSP00000138587
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,751,667 - 121,754,857 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182763   ⟹   ENSMUSP00000138272
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,719,178 - 121,742,636 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182904
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,719,181 - 121,738,516 (+)Ensembl
RefSeq Acc Id: ENSMUST00000183070   ⟹   ENSMUSP00000138611
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,719,169 - 121,742,718 (+)Ensembl
RefSeq Acc Id: ENSMUST00000183207
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,719,298 - 121,720,012 (+)Ensembl
RefSeq Acc Id: ENSMUST00000183311
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,719,217 - 121,730,013 (+)Ensembl
RefSeq Acc Id: ENSMUST00000213351
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,750,415 - 121,752,579 (+)Ensembl
RefSeq Acc Id: ENSMUST00000216573
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,740,656 - 121,742,166 (+)Ensembl
RefSeq Acc Id: NM_010918   ⟹   NP_035048
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,548,247 - 121,585,907 (+)NCBI
GRCm389121,719,181 - 121,756,841 (+)NCBI
MGSCv379121,628,299 - 121,665,959 (+)RGD
Celera9122,192,346 - 122,230,008 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511978   ⟹   XP_006512041
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,548,243 - 121,585,903 (+)NCBI
GRCm389121,719,177 - 121,754,397 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011242939   ⟹   XP_011241241
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,542,244 - 121,585,903 (+)NCBI
GRCm389121,713,881 - 121,754,397 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244109   ⟹   XP_030099969
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,542,244 - 121,585,903 (+)NCBI
GRCm389121,713,881 - 121,754,397 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244110   ⟹   XP_030099970
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,542,244 - 121,585,903 (+)NCBI
GRCm389121,713,881 - 121,754,397 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244112   ⟹   XP_030099972
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,548,224 - 121,585,903 (+)NCBI
GRCm389121,719,169 - 121,754,397 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244113   ⟹   XP_030099973
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,548,249 - 121,585,903 (+)NCBI
GRCm389121,719,183 - 121,754,397 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244114   ⟹   XP_030099974
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,548,196 - 121,585,903 (+)NCBI
GRCm389121,719,130 - 121,754,397 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244115   ⟹   XP_030099975
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,548,283 - 121,585,903 (+)NCBI
GRCm389121,719,217 - 121,754,397 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244116   ⟹   XP_030099976
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,548,235 - 121,585,903 (+)NCBI
GRCm389121,719,169 - 121,754,397 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244119   ⟹   XP_030099979
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,548,322 - 121,585,903 (+)NCBI
GRCm389121,719,256 - 121,754,397 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244120   ⟹   XP_030099980
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,548,196 - 121,585,903 (+)NCBI
GRCm389121,719,130 - 121,754,397 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244121   ⟹   XP_030099981
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,567,550 - 121,585,903 (+)NCBI
GRCm389121,738,484 - 121,754,397 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244122   ⟹   XP_030099982
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,542,244 - 121,560,631 (+)NCBI
GRCm389121,713,881 - 121,731,565 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036154680   ⟹   XP_036010573
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,542,244 - 121,585,704 (+)NCBI
RefSeq Acc Id: XM_036154681   ⟹   XP_036010574
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,548,226 - 121,585,903 (+)NCBI
RefSeq Acc Id: XM_036154682   ⟹   XP_036010575
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,567,550 - 121,585,903 (+)NCBI
RefSeq Acc Id: XR_003947811
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,542,244 - 121,578,912 (+)NCBI
GRCm389121,713,881 - 121,748,220 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003947812
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,542,244 - 121,573,086 (+)NCBI
GRCm389121,713,881 - 121,744,020 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004935337
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,542,244 - 121,578,912 (+)NCBI
RefSeq Acc Id: XR_871176
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,548,490 - 121,585,908 (+)NCBI
GRCm389121,719,424 - 121,756,842 (+)NCBI
Sequence:
RefSeq Acc Id: XR_871177
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,548,490 - 121,585,908 (+)NCBI
GRCm389121,719,424 - 121,756,842 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_035048 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512041 (Get FASTA)   NCBI Sequence Viewer  
  XP_011241241 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099969 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099970 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099972 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099973 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099974 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099975 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099976 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099979 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099980 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099981 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099982 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010573 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010574 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010575 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA37500 (Get FASTA)   NCBI Sequence Viewer  
  AAC53053 (Get FASTA)   NCBI Sequence Viewer  
  BAC29113 (Get FASTA)   NCBI Sequence Viewer  
  BAE25777 (Get FASTA)   NCBI Sequence Viewer  
  BAE37534 (Get FASTA)   NCBI Sequence Viewer  
  EDL09134 (Get FASTA)   NCBI Sequence Viewer  
  EDL09135 (Get FASTA)   NCBI Sequence Viewer  
  EDL09136 (Get FASTA)   NCBI Sequence Viewer  
  EDL09137 (Get FASTA)   NCBI Sequence Viewer  
  EDL09138 (Get FASTA)   NCBI Sequence Viewer  
  P30415 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_035048   ⟸   NM_010918
- UniProtKB: P30415 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006512041   ⟸   XM_006511978
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011241241   ⟸   XM_011242939
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030099969   ⟸   XM_030244109
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030099970   ⟸   XM_030244110
- Peptide Label: isoform X4
RefSeq Acc Id: XP_030099982   ⟸   XM_030244122
- Peptide Label: isoform X10
RefSeq Acc Id: XP_030099980   ⟸   XM_030244120
- Peptide Label: isoform X7
RefSeq Acc Id: XP_030099974   ⟸   XM_030244114
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030099972   ⟸   XM_030244112
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030099976   ⟸   XM_030244116
- Peptide Label: isoform X6
RefSeq Acc Id: XP_030099973   ⟸   XM_030244113
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030099975   ⟸   XM_030244115
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030099979   ⟸   XM_030244119
- Peptide Label: isoform X7
RefSeq Acc Id: XP_030099981   ⟸   XM_030244121
- Peptide Label: isoform X8
RefSeq Acc Id: ENSMUSP00000138611   ⟸   ENSMUST00000183070
RefSeq Acc Id: ENSMUSP00000138587   ⟸   ENSMUST00000182713
RefSeq Acc Id: ENSMUSP00000138272   ⟸   ENSMUST00000182763
RefSeq Acc Id: ENSMUSP00000035112   ⟸   ENSMUST00000035112
RefSeq Acc Id: ENSMUSP00000138168   ⟸   ENSMUST00000182225
RefSeq Acc Id: ENSMUSP00000138437   ⟸   ENSMUST00000182179
RefSeq Acc Id: ENSMUSP00000138690   ⟸   ENSMUST00000182311
RefSeq Acc Id: ENSMUSP00000138164   ⟸   ENSMUST00000182337
RefSeq Acc Id: ENSMUSP00000138463   ⟸   ENSMUST00000182503
RefSeq Acc Id: XP_036010573   ⟸   XM_036154680
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036010574   ⟸   XM_036154681
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036010575   ⟸   XM_036154682
- Peptide Label: isoform X9
Protein Domains
PPIase cyclophilin-type

Promoters
RGD ID:6844878
Promoter ID:MM_KWN:59206
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000035112,   UC009SDP.1,   UC009SDQ.1,   UC009SDS.1,   UC009SDT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369121,627,941 - 121,628,442 (+)MPROMDB
RGD ID:8671260
Promoter ID:EPDNEW_M13661
Type:initiation region
Name:Nktr_1
Description:Mus musculus natural killer tumor recognition sequence , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389121,719,240 - 121,719,300EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97346 AgrOrtholog
Ensembl Genes ENSMUSG00000032525 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000035112 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000138164 UniProtKB/TrEMBL
  ENSMUSP00000138168 UniProtKB/TrEMBL
  ENSMUSP00000138272 UniProtKB/TrEMBL
  ENSMUSP00000138437 UniProtKB/TrEMBL
  ENSMUSP00000138463 UniProtKB/TrEMBL
  ENSMUSP00000138587 UniProtKB/TrEMBL
  ENSMUSP00000138611 UniProtKB/TrEMBL
  ENSMUSP00000138690 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000035112 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000182179 UniProtKB/TrEMBL
  ENSMUST00000182225 UniProtKB/TrEMBL
  ENSMUST00000182311 UniProtKB/TrEMBL
  ENSMUST00000182337 UniProtKB/TrEMBL
  ENSMUST00000182503 UniProtKB/TrEMBL
  ENSMUST00000182713 UniProtKB/TrEMBL
  ENSMUST00000182763 UniProtKB/TrEMBL
  ENSMUST00000183070 UniProtKB/TrEMBL
Gene3D-CATH 2.40.100.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cyclophilin-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclophilin-type_PPIase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclophilin-type_PPIase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18087 UniProtKB/Swiss-Prot
MGD MGI:97346 ENTREZGENE
NCBI Gene 18087 ENTREZGENE
Pfam Pro_isomerase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nktr PhenoGen
PRINTS CSAPPISMRASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CSA_PPIASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CSA_PPIASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50891 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt NKTR_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TQ51_MOUSE UniProtKB/TrEMBL
  Q8CBP6_MOUSE UniProtKB/TrEMBL
  S4R1C3_MOUSE UniProtKB/TrEMBL
  S4R1L7_MOUSE UniProtKB/TrEMBL
  S4R220_MOUSE UniProtKB/TrEMBL
  S4R2C2_MOUSE UniProtKB/TrEMBL
  S4R2L3_MOUSE UniProtKB/TrEMBL
UniProt Secondary D3Z303 UniProtKB/TrEMBL
  F8VPR8 UniProtKB/Swiss-Prot
  Q3UNH0 UniProtKB/Swiss-Prot