Snapin (SNAP-associated protein) - Rat Genome Database

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Gene: Snapin (SNAP-associated protein) Mus musculus
Analyze
Symbol: Snapin
Name: SNAP-associated protein
RGD ID: 1615164
MGI Page MGI
Description: Predicted to have SNARE binding activity. Involved in several processes, including axonal transport; lysosomal lumen acidification; and vesicle organization. Localizes to BLOC-1 complex; acrosomal vesicle; and manchette. Is expressed in several structures, including alimentary system; brain; cardiovascular system; genitourinary system; and immune system. Orthologous to human SNAPIN (SNAP associated protein); INTERACTS WITH 1,2-dimethylhydrazine; 2,2',4,4',5,5'-hexachlorobiphenyl; 2,2',5,5'-tetrachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 25kDa; AA407989; AV026596; biogenesis of lysosome-related organelles complex 1 subunit 7; Bloc; BLOC-1 subunit 7; Bloc1s7; Sna; Snap25bp; Snapap; SNARE-associated protein Snapin; synaptosomal-associated protein 25 binding protein; synaptosomal-associated protein 25-binding protein; synaptosomal-associated protein, 25 kDa, binding protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,395,333 - 90,398,320 (-)NCBIGRCm39mm39
GRCm39 Ensembl390,395,333 - 90,398,340 (-)Ensembl
GRCm38390,488,026 - 90,491,013 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,488,026 - 90,491,033 (-)EnsemblGRCm38mm10GRCm38
MGSCv37390,291,948 - 90,294,935 (-)NCBIGRCm37mm9NCBIm37
MGSCv36390,573,961 - 90,576,931 (-)NCBImm8
Celera390,525,872 - 90,528,858 (-)NCBICelera
Cytogenetic Map3F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function
protein binding  (IPI,ISO)
SNARE binding  (IBA,ISO)

References

References - curated
1. RGD automated import pipeline
2. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10195194   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11283605   PMID:12466851   PMID:12477932   PMID:12877659   PMID:12887314  
PMID:14610273   PMID:15102850   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16280592   PMID:16595180   PMID:16602821   PMID:16980328   PMID:17101137   PMID:17110384  
PMID:17595323   PMID:17947242   PMID:18167355   PMID:19217378   PMID:19335339   PMID:19546860   PMID:20696250   PMID:20920792   PMID:20946101   PMID:21233602   PMID:21267068   PMID:21356520  
PMID:21677750   PMID:21873635   PMID:21986494   PMID:21998198   PMID:22797916   PMID:22840395   PMID:23726552   PMID:23949442   PMID:24039861   PMID:24194600   PMID:24373968   PMID:26108535  
PMID:27626380   PMID:27915047   PMID:28085665   PMID:28905875   PMID:31146259   PMID:32325033  


Genomics

Comparative Map Data
Snapin
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,395,333 - 90,398,320 (-)NCBIGRCm39mm39
GRCm39 Ensembl390,395,333 - 90,398,340 (-)Ensembl
GRCm38390,488,026 - 90,491,013 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,488,026 - 90,491,033 (-)EnsemblGRCm38mm10GRCm38
MGSCv37390,291,948 - 90,294,935 (-)NCBIGRCm37mm9NCBIm37
MGSCv36390,573,961 - 90,576,931 (-)NCBImm8
Celera390,525,872 - 90,528,858 (-)NCBICelera
Cytogenetic Map3F1NCBI
SNAPIN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1153,658,703 - 153,661,852 (+)EnsemblGRCh38hg38GRCh38
GRCh381153,658,654 - 153,661,852 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371153,631,130 - 153,634,328 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,897,824 - 151,900,930 (+)NCBINCBI36hg18NCBI36
Build 341150,444,272 - 150,447,378NCBI
Celera1126,702,324 - 126,705,505 (+)NCBI
Cytogenetic Map1q21.3NCBI
HuRef1124,994,466 - 124,997,664 (+)NCBIHuRef
CHM1_11155,027,119 - 155,030,317 (+)NCBICHM1_1
Snapin
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22175,971,575 - 175,974,164 (-)NCBI
Rnor_6.0 Ensembl2189,878,168 - 189,880,743 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02189,878,159 - 189,880,743 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02209,309,032 - 209,311,616 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,762,310 - 182,764,481 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2169,907,172 - 169,909,756 (-)NCBICelera
Cytogenetic Map2q34NCBI
Snapin
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545306,546 - 308,229 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955545306,546 - 308,229 (+)NCBIChiLan1.0ChiLan1.0
SNAPIN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11132,644,319 - 132,647,095 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,644,320 - 132,647,095 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01129,014,668 - 129,018,428 (+)NCBIMhudiblu_PPA_v0panPan3
SNAPIN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,410,554 - 43,411,929 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl743,410,998 - 43,412,323 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,903,507 - 42,904,962 (-)NCBI
ROS_Cfam_1.0743,360,183 - 43,361,638 (-)NCBI
UMICH_Zoey_3.1743,062,261 - 43,063,711 (-)NCBI
UNSW_CanFamBas_1.0743,115,755 - 43,117,214 (-)NCBI
UU_Cfam_GSD_1.0743,399,406 - 43,400,865 (-)NCBI
Snapin
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,433,043 - 24,436,084 (+)NCBI
SpeTri2.0NW_0049365803,449,585 - 3,464,709 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNAPIN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl495,984,358 - 95,989,474 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1495,987,524 - 95,989,527 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,880,697 - 104,882,699 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNAPIN
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,147,577 - 10,150,721 (-)NCBI
ChlSab1.1 Ensembl2010,148,099 - 10,150,641 (-)Ensembl
Snapin
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248853,490,321 - 3,491,963 (-)NCBI

Position Markers
AV026596  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38390,488,249 - 90,488,351UniSTSGRCm38
MGSCv37390,292,171 - 90,292,273UniSTSGRCm37
Celera390,526,095 - 90,526,197UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map3F2UniSTS
Whitehead/MRC_RH31013.37UniSTS
RH125753  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38390,488,421 - 90,488,670UniSTSGRCm38
MGSCv37390,292,343 - 90,292,592UniSTSGRCm37
Celera390,526,267 - 90,526,516UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map3F1UniSTS
Whitehead/MRC_RH31015.51UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33200000142700000Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7521114102782718Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316000000109800000Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316450000130370000Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328900000119100000Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330013439147599053Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337120713143647422Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)341000000116000000Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)344000000101700000Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)352000000102400000Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352300000137500000Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356796681100556821Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35900000093000000Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36183275495832934Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366139351100139488Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)368000000128600000Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369661247103661247Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369718176100747974Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370301597104301735Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372232660106232787Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372232660106232787Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375555995109556242Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379641414113641521Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381177336115177481Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382239727116239868Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383556675117556821Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383556675117556821Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383556675117556821Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383556675117556821Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383556675117556821Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383556675117556821Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383556675117556821Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383975596117975728Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384981602118981751Mouse
14746984Manh54_mmandible shape 54 (mouse)385381836119381836Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387301597125522587Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387320699121320699Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389232660137747247Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390469620124469756Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390470701124470701Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1089
Count of miRNA genes:383
Interacting mature miRNAs:438
Transcripts:ENSMUST00000107351, ENSMUST00000107352, ENSMUST00000149884, ENSMUST00000184877, ENSMUST00000185005
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_133854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC160552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF086838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000107351
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl390,489,000 - 90,490,792 (-)Ensembl
RefSeq Acc Id: ENSMUST00000107352
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl390,488,026 - 90,490,428 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149884   ⟹   ENSMUSP00000122090
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl390,488,034 - 90,491,033 (-)Ensembl
RefSeq Acc Id: ENSMUST00000184877   ⟹   ENSMUSP00000139315
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl390,488,373 - 90,491,024 (-)Ensembl
RefSeq Acc Id: ENSMUST00000185005   ⟹   ENSMUSP00000139160
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl390,488,370 - 90,490,993 (-)Ensembl
RefSeq Acc Id: NM_133854   ⟹   NP_598615
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,395,333 - 90,398,320 (-)NCBI
GRCm38390,488,026 - 90,491,013 (-)ENTREZGENE
MGSCv37390,291,948 - 90,294,935 (-)RGD
Celera390,525,872 - 90,528,858 (-)RGD
cM Map3 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_598615   ⟸   NM_133854
- UniProtKB: Q9Z266 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000139315   ⟸   ENSMUST00000184877
RefSeq Acc Id: ENSMUSP00000139160   ⟸   ENSMUST00000185005
RefSeq Acc Id: ENSMUSP00000122090   ⟸   ENSMUST00000149884

Promoters
RGD ID:6834516
Promoter ID:MM_KWN:35037
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000107351,   ENSMUST00000107352,   OTTMUST00000052477,   UC008QCL.1,   UC008QCM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36390,294,459 - 90,294,959 (-)MPROMDB
RGD ID:6881344
Promoter ID:EPDNEW_M4123
Type:initiation region
Name:Snapin_1
Description:Mus musculus SNAP-associated protein , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38390,491,001 - 90,491,061EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1333745 AgrOrtholog
Ensembl Genes ENSMUSG00000001018 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000122090 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000139160 UniProtKB/TrEMBL
  ENSMUSP00000139315 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000149884 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000184877 UniProtKB/TrEMBL
  ENSMUST00000185005 UniProtKB/TrEMBL
InterPro Snapin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Snapin/Pallidin/Snn1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20615 UniProtKB/Swiss-Prot
MGD MGI:1333745 ENTREZGENE
NCBI Gene 20615 ENTREZGENE
PANTHER PTHR31305 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Snapin_Pallidin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Snapin PhenoGen
PIRSF Snapin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q3UY32_MOUSE UniProtKB/TrEMBL
  Q9Z266 ENTREZGENE, UniProtKB/Swiss-Prot
  V9GXI0_MOUSE UniProtKB/TrEMBL
  V9GXT7_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q3U8V4 UniProtKB/Swiss-Prot
  Q922V7 UniProtKB/Swiss-Prot