Rnf166 (ring finger protein 166) - Rat Genome Database

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Gene: Rnf166 (ring finger protein 166) Mus musculus
Analyze
Symbol: Rnf166
Name: ring finger protein 166
RGD ID: 1615102
MGI Page MGI
Description: Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within autophagy and innate immune response. Predicted to be located in cytoplasm. Is expressed in several structures, including brain; hemolymphoid system gland; liver; lung; and spinal cord. Orthologous to human RNF166 (ring finger protein 166).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110031E24Rik; AW555115; E3 ubiquitin-protein ligase RNF166; RING-type E3 ubiquitin transferase RNF166; Zfp31; Zfp313l; zinc finger protein 228; zinc finger protein 313
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398123,192,884 - 123,202,813 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8123,192,886 - 123,202,803 (-)EnsemblGRCm39 Ensembl
GRCm388122,466,145 - 122,476,074 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8122,466,147 - 122,476,064 (-)EnsemblGRCm38mm10GRCm38
MGSCv378124,990,047 - 124,999,964 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368125,352,237 - 125,362,154 (-)NCBIMGSCv36mm8
Celera8126,695,258 - 126,705,120 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map871.17NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:14655014   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:21267068   PMID:21873635   PMID:32325033   PMID:33130818   PMID:34837535  


Genomics

Comparative Map Data
Rnf166
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398123,192,884 - 123,202,813 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8123,192,886 - 123,202,803 (-)EnsemblGRCm39 Ensembl
GRCm388122,466,145 - 122,476,074 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8122,466,147 - 122,476,064 (-)EnsemblGRCm38mm10GRCm38
MGSCv378124,990,047 - 124,999,964 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368125,352,237 - 125,362,154 (-)NCBIMGSCv36mm8
Celera8126,695,258 - 126,705,120 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map871.17NCBI
RNF166
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381688,696,501 - 88,706,408 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1688,696,499 - 88,706,408 (-)EnsemblGRCh38hg38GRCh38
GRCh371688,762,909 - 88,772,816 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361687,290,410 - 87,300,301 (-)NCBINCBI36Build 36hg18NCBI36
Build 341687,290,410 - 87,300,301NCBI
Celera1673,832,574 - 73,842,523 (-)NCBICelera
Cytogenetic Map16q24.2-q24.3NCBI
HuRef1674,457,276 - 74,467,225 (-)NCBIHuRef
CHM1_11690,174,222 - 90,184,171 (-)NCBICHM1_1
T2T-CHM13v2.01694,765,637 - 94,775,565 (-)NCBIT2T-CHM13v2.0
Rnf166
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81967,437,974 - 67,447,814 (-)NCBIGRCr8
mRatBN7.21950,529,434 - 50,539,274 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1950,529,434 - 50,539,274 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1957,324,608 - 57,334,426 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01958,004,363 - 58,014,203 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01960,223,231 - 60,233,049 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01955,290,563 - 55,300,403 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1955,290,563 - 55,300,403 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01965,999,963 - 66,009,803 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41952,755,818 - 52,765,658 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11952,760,698 - 52,770,539 (-)NCBI
Celera1949,768,913 - 49,778,753 (-)NCBICelera
Cytogenetic Map19q12NCBI
Rnf166
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555412,605,096 - 2,608,866 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555412,604,197 - 2,607,969 (-)NCBIChiLan1.0ChiLan1.0
RNF166
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21898,469,756 - 98,479,783 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116104,381,805 - 104,391,859 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01669,409,777 - 69,419,761 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11689,069,686 - 89,078,115 (-)NCBIpanpan1.1PanPan1.1panPan2
RNF166
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1564,647,411 - 64,655,994 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl564,647,415 - 64,655,999 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha564,658,716 - 64,667,223 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0564,867,446 - 64,875,950 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl564,867,440 - 64,875,950 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1564,893,635 - 64,902,130 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0564,725,193 - 64,733,688 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0565,131,361 - 65,139,870 (+)NCBIUU_Cfam_GSD_1.0
Rnf166
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934925,233,929 - 25,240,988 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936641990,568 - 993,498 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936641987,476 - 994,535 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF166
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6976,980 - 982,995 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16976,957 - 982,997 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RNF166
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1574,080,605 - 74,091,114 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl574,081,203 - 74,091,018 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660471,589,041 - 1,606,413 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf166
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624746878,208 - 886,647 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624746877,581 - 886,157 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rnf166
407 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:873
Count of miRNA genes:498
Interacting mature miRNAs:598
Transcripts:ENSMUST00000014614, ENSMUST00000136356, ENSMUST00000148780
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889726628130027694Mouse
1357494Obsty2_mobesity 2 (mouse)Not determined896245241129745061Mouse
12880431Fgf23lq2_mFGF23 serum level QTL 2 (mouse)897626632130127694Mouse
11252141Fdr2_mfat response to dietary restriction 2 (mouse)898390634130127694Mouse
1301481Lith11_mlithogenic gene 11 (mouse)Not determined898563635130127694Mouse
1302105Im1_mImmunoregulatory 1 (mouse)Not determined899828531130127694Mouse
1301080Sluc9_msusceptibility to lung cancer 9 (mouse)Not determined899828531130127694Mouse
4141435Fbtq3_mfemoral bone trait QTL 3 (mouse)Not determined8100965309130127694Mouse
1301316Dntcs1_mdental caries susceptibility 1 (mouse)Not determined8103443553127781786Mouse
11532691Sluc38_msusceptibility to lung cancer 38 (mouse)8105033977130127694Mouse
11532692Sluc38a_msusceptibility to lung cancer 38a (mouse)8105033977130127694Mouse
14746994Manh65_mmandible shape 65 (mouse)8106489629130127694Mouse
10412273Fcd1_mfunctional capillary density 1 (mouse)Not determined8110415083130127694Mouse
10412274Leci1_mleukocyte endothelial cell interactions 1 (mouse)Not determined8110415083130127694Mouse
12904938Edlmmq7_mextensor digitorum longus muscle mass QTL 7 (mouse)8111481497130127694Mouse
12904960Gmmq6_mgastrocnemius muscle mass QTL 6 (mouse)8111481497130127694Mouse
4141546Mrdq3_mmodifier of retinal degeneration QTL 3 (mouse)Not determined114439420126055880Mouse
26884375Skwq2_mskull length QTL 2, 5 week (mouse)8120726739130027694Mouse

Markers in Region
AW555115  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388122,466,352 - 122,466,479UniSTSGRCm38
MGSCv378124,990,252 - 124,990,379UniSTSGRCm37
Celera8126,695,463 - 126,695,590UniSTS
Cytogenetic Map8E1UniSTS
Whitehead/MRC_RH81421.73UniSTS
UniSTS:236037  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388122,466,629 - 122,466,767UniSTSGRCm38
MGSCv378124,990,529 - 124,990,667UniSTSGRCm37
Celera8126,695,740 - 126,695,878UniSTS
Cytogenetic Map8E1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001033142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001368370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC114917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC131924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000014614   ⟹   ENSMUSP00000014614
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8123,192,886 - 123,202,803 (-)Ensembl
GRCm38.p6 Ensembl8122,466,147 - 122,476,064 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136356
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8123,193,601 - 123,194,966 (-)Ensembl
GRCm38.p6 Ensembl8122,466,862 - 122,468,227 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148780
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8123,194,748 - 123,202,427 (-)Ensembl
GRCm38.p6 Ensembl8122,468,009 - 122,475,688 (-)Ensembl
RefSeq Acc Id: NM_001033142   ⟹   NP_001028314
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398123,192,884 - 123,202,813 (-)NCBI
GRCm388122,466,145 - 122,476,074 (-)NCBI
MGSCv378124,990,047 - 124,999,964 (-)RGD
Celera8126,695,258 - 126,705,120 (-)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001368370   ⟹   NP_001355299
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398123,192,884 - 123,202,463 (-)NCBI
GRCm388122,466,145 - 122,475,724 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001028314   ⟸   NM_001033142
- Peptide Label: isoform 1
- UniProtKB: Q3U9F6 (UniProtKB/Swiss-Prot),   A2RS02 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001355299   ⟸   NM_001368370
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000014614   ⟸   ENSMUST00000014614
Protein Domains
C2HC RNF-type   RING-type   UIM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3U9F6-F1-model_v2 AlphaFold Q3U9F6 1-237 view protein structure

Promoters
RGD ID:8668517
Promoter ID:EPDNEW_M12290
Type:initiation region
Name:Rnf166_1
Description:Mus musculus ring finger protein 166 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm388122,476,074 - 122,476,134EPDNEW
RGD ID:6843681
Promoter ID:MM_KWN:55995
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung,   Spleen
Transcripts:OTTMUST00000076140,   UC009NSY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv368124,991,951 - 124,992,451 (-)MPROMDB
RGD ID:6842511
Promoter ID:MM_KWN:55996
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001033142,   NM_153775,   OTTMUST00000053537,   OTTMUST00000053538,   OTTMUST00000053539,   OTTMUST00000053540,   OTTMUST00000053541,   OTTMUST00000076139,   UC009NTA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv368124,999,121 - 125,001,357 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915968 AgrOrtholog
Ensembl Genes ENSMUSG00000014470 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000014614 ENTREZGENE
  ENSMUST00000014614.4 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Di19_Zn_binding_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_C2HC_RNF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:68718 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1915968 ENTREZGENE
NCBI Gene 68718 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF166 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER, RING/FYVE/PHD-TYPE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-C3HC4_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-Di19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf_C2HC_14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rnf166 PhenoGen
PROSITE ZF_C2HC_RNF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2RS02 ENTREZGENE, UniProtKB/TrEMBL
  Q3U9F6 ENTREZGENE, UniProtKB/Swiss-Prot