Gm9 (predicted gene 9) - Rat Genome Database

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Gene: Gm9 (predicted gene 9) Mus musculus
Analyze
No known orthologs.
Symbol: Gm9
Name: predicted gene 9
RGD ID: 1614971
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: PREDICTED
Previously known as: hypothetical protein LOC194854; uncharacterized protein LOC194854
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X36,472,155 - 36,474,694 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX36,473,001 - 36,474,694 (-)EnsemblGRCm39 Ensembl
GRCm38X37,208,502 - 37,211,041 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX37,209,348 - 37,211,041 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X34,748,497 - 34,751,036 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X33,639,947 - 33,642,486 (-)NCBIMGSCv36mm8
CeleraX23,931,813 - 23,934,352 (-)NCBICelera
Cytogenetic MapXA3.3NCBI
cM MapX21.63NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:17182866  


Genomics

Variants

.
Variants in Gm9
41 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:79
Count of miRNA genes:79
Interacting mature miRNAs:79
Transcripts:ENSMUST00000101636
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
1301551Spha1_msperm head anomaly 1 (mouse)Not determinedX1026622539921652Mouse
13208553Wght11_mweight 11 (mouse)X1186623959045360Mouse
13208557Lgth13_mbody length 13 (mouse)X1186623959045360Mouse
1558721Bw1_mbody weight QTL 1 (mouse)Not determinedX2060678347179225Mouse
12738418Lfibq12_mliver fibrosis QTL 12 (mouse)X2572817443635700Mouse
27226750Femd9_mfemur midshaft diameter 9, 10 week (mouse)X3333746355845360Mouse
27226780Femd12_mfemur midshaft diameter 12, 16 week (mouse)X3466365356845360Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000101636   ⟹   ENSMUSP00000099160
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX36,473,001 - 36,474,694 (-)Ensembl
GRCm38.p6 EnsemblX37,209,348 - 37,211,041 (-)Ensembl
RefSeq Acc Id: NM_001033234   ⟹   NP_001028406
RefSeq Status: PREDICTED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X36,472,155 - 36,474,694 (-)NCBI
GRCm38X37,208,502 - 37,211,041 (-)ENTREZGENE
MGSCv37X34,748,497 - 34,751,036 (-)RGD
CeleraX23,931,813 - 23,934,352 (-)RGD
cM MapX ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001028406 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAE20750 (Get FASTA)   NCBI Sequence Viewer  
  BAE26686 (Get FASTA)   NCBI Sequence Viewer  
  EDL28996 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000099160
  ENSMUSP00000099160.2
Reference Protein Sequences
RefSeq Acc Id: NP_001028406   ⟸   NM_001033234
- UniProtKB: Q3UKW5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000099160   ⟸   ENSMUST00000101636

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3UKW5-F1-model_v2 AlphaFold Q3UKW5 1-162 view protein structure

Promoters
RGD ID:6845789
Promoter ID:MM_KWN:60024
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:NM_001033234
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X34,750,976 - 34,751,476 (-)MPROMDB
RGD ID:13680298
Promoter ID:EPDNEW_M24298
Type:initiation region
Name:Gm9_1
Description:Mus musculus predicted gene 9 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X37,211,004 - 37,211,064EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2684855 AgrOrtholog
Ensembl Genes ENSMUSG00000073243 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000101636 ENTREZGENE
  ENSMUST00000101636.3 UniProtKB/TrEMBL
KEGG Report mmu:194854 UniProtKB/TrEMBL
MGD MGI:2684855 ENTREZGENE
NCBI Gene 194854 ENTREZGENE
PhenoGen Gm9 PhenoGen
UniProt Q3UKW5 ENTREZGENE, UniProtKB/TrEMBL