Myocd (myocardin) - Rat Genome Database

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Gene: Myocd (myocardin) Mus musculus
Analyze
Symbol: Myocd
Name: myocardin
RGD ID: 1614957
MGI Page MGI
Description: Enables several functions, including R-SMAD binding activity; enzyme binding activity; and transcription coactivator activity. Involved in several processes, including circulatory system development; negative regulation of vascular associated smooth muscle cell migration; and regulation of signal transduction. Acts upstream of or within several processes, including animal organ development; circulatory system development; and regulation of transcription, DNA-templated. Located in chromatin and nucleus. Is expressed in several structures, including cardiovascular system; genitourinary system; gut; paraxial mesenchyme; and respiratory system. Used to study bladder disease; dilated cardiomyopathy; and patent ductus arteriosus. Human ortholog(s) of this gene implicated in congenital megabladder. Orthologous to human MYOCD (myocardin); PARTICIPATES IN platelet-derived growth factor signaling pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: basic SAP coiled-coil transcription activator 2; BSAC2A; Sr; SRF co-factor protein (cardiac and smooth muscle); SRF cofactor protein; Srfcp
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391165,064,434 - 65,160,815 (-)NCBIGRCm39mm39
GRCm39 Ensembl1165,067,387 - 65,160,815 (-)Ensembl
GRCm381165,173,608 - 65,269,989 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1165,176,561 - 65,269,989 (-)EnsemblGRCm38mm10GRCm38
MGSCv371164,990,063 - 65,083,491 (-)NCBIGRCm37mm9NCBIm37
MGSCv361164,992,756 - 65,086,175 (-)NCBImm8
Celera1172,112,506 - 72,207,425 (-)NCBICelera
Cytogenetic Map11B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cardiac muscle cell differentiation  (IBA,IMP)
cardiac ventricle development  (IMP)
cell growth involved in cardiac muscle cell development  (ISO)
cellular component maintenance  (IMP)
cellular response to growth factor stimulus  (ISO)
cellular response to hypoxia  (ISO)
digestive tract development  (IMP)
ductus arteriosus closure  (IMP)
heart development  (IMP)
hepatic stellate cell activation  (ISO)
lung alveolus development  (IMP)
muscle cell differentiation  (IMP)
negative regulation of amyloid-beta clearance  (ISO)
negative regulation of cardiac muscle cell apoptotic process  (IMP)
negative regulation of cell adhesion molecule production  (IDA)
negative regulation of cell population proliferation  (ISO)
negative regulation of cyclin-dependent protein serine/threonine kinase activity  (ISO)
negative regulation of myotube differentiation  (IMP)
negative regulation of platelet-derived growth factor receptor-beta signaling pathway  (IDA)
negative regulation of skeletal muscle cell differentiation  (ISO)
negative regulation of transcription by RNA polymerase II  (IGI)
negative regulation of vascular associated smooth muscle cell migration  (IDA)
negative regulation of vascular associated smooth muscle cell proliferation  (IDA)
positive regulation of cardiac muscle cell differentiation  (ISO)
positive regulation of cardiac vascular smooth muscle cell differentiation  (ISO)
positive regulation of cell population proliferation  (IDA)
positive regulation of DNA binding  (IGI)
positive regulation of DNA-binding transcription factor activity  (IDA,ISO)
positive regulation of epithelial to mesenchymal transition  (ISO)
positive regulation of gene expression  (IDA)
positive regulation of production of miRNAs involved in gene silencing by miRNA  (IDA)
positive regulation of smooth muscle cell differentiation  (ISO)
positive regulation of smooth muscle contraction  (ISO)
positive regulation of transcription by RNA polymerase II  (IBA,IDA,IGI,ISO)
positive regulation of transcription from RNA polymerase II promoter involved in heart development  (IDA)
positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation  (ISO)
positive regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation  (ISO)
positive regulation of transcription, DNA-templated  (IDA,ISO)
positive regulation of transforming growth factor beta receptor signaling pathway  (IDA)
regulation of cell growth by extracellular stimulus  (IDA)
regulation of histone acetylation  (IDA)
regulation of myoblast differentiation  (IMP)
regulation of phenotypic switching  (IGI)
regulation of smooth muscle cell differentiation  (ISO)
regulation of transcription by RNA polymerase II  (IDA)
response to hypoxia  (ISO)
smooth muscle cell differentiation  (IBA,IMP,ISO)
urinary bladder development  (IMP,ISO)
uterus development  (IMP)
vascular associated smooth muscle cell differentiation  (IGI)
vasculogenesis  (IMP)
ventricular cardiac muscle cell differentiation  (IMP)

Cellular Component
chromatin  (IDA)
nucleus  (IBA,IDA,ISO)
SRF-myogenin-E12 complex  (IC)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11439182   PMID:11511353   PMID:12397177   PMID:12466851   PMID:12477932   PMID:12640126   PMID:12663482   PMID:12756293  
PMID:12858529   PMID:12867591   PMID:14645524   PMID:14645532   PMID:15016729   PMID:15044015   PMID:15169892   PMID:15231515   PMID:15331365   PMID:15601857   PMID:15618518   PMID:15634680  
PMID:15657056   PMID:15767668   PMID:15798203   PMID:15929941   PMID:16141072   PMID:16141073   PMID:16204380   PMID:16224064   PMID:16310178   PMID:16818234   PMID:17021041   PMID:17030628  
PMID:17215356   PMID:17292825   PMID:17360478   PMID:17363709   PMID:17585069   PMID:17940050   PMID:17991879   PMID:18025109   PMID:18188448   PMID:18203678   PMID:18296632   PMID:18316483  
PMID:18511849   PMID:18776146   PMID:18945672   PMID:19097117   PMID:19342595   PMID:19578358   PMID:19619540   PMID:19620969   PMID:19705442   PMID:19706423   PMID:19776005   PMID:19797053  
PMID:19801679   PMID:19850880   PMID:20019329   PMID:20059953   PMID:20167605   PMID:20211142   PMID:20378849   PMID:20385216   PMID:20484220   PMID:20564193   PMID:20566642   PMID:20881014  
PMID:21051663   PMID:21267068   PMID:21305474   PMID:21357509   PMID:21402709   PMID:21423180   PMID:21506120   PMID:21677750   PMID:21693521   PMID:21704027   PMID:21708977   PMID:21779394  
PMID:21873635   PMID:21897873   PMID:21979435   PMID:21984848   PMID:22075245   PMID:22580282   PMID:22615115   PMID:22772757   PMID:22843699   PMID:22863011   PMID:22884695   PMID:22996691  
PMID:23007391   PMID:23103763   PMID:23144723   PMID:23308271   PMID:23359472   PMID:23449535   PMID:23645682   PMID:23671695   PMID:23704920   PMID:23825366   PMID:23946491   PMID:24068960  
PMID:24106278   PMID:24133205   PMID:24248596   PMID:24252873   PMID:24335282   PMID:24478334   PMID:24705356   PMID:24855642   PMID:25100730   PMID:25109772   PMID:25127126   PMID:25139858  
PMID:25174608   PMID:25573853   PMID:25614278   PMID:25631042   PMID:25805819   PMID:25957400   PMID:26020233   PMID:26057579   PMID:26077572   PMID:26105053   PMID:26244347   PMID:26321200  
PMID:26453897   PMID:26930384   PMID:27174098   PMID:27403897   PMID:27736991   PMID:28195173   PMID:28334964   PMID:28342289   PMID:28342807   PMID:28351867   PMID:28538179   PMID:28574994  
PMID:28655168   PMID:28797033   PMID:28943241   PMID:28952437   PMID:29093270   PMID:29114040   PMID:29295976   PMID:29367466   PMID:29482449   PMID:29511336   PMID:29555813   PMID:29976770  
PMID:30153454   PMID:30478225   PMID:30649340   PMID:30796970   PMID:30916783   PMID:31024075   PMID:31029421   PMID:31167144   PMID:31513549   PMID:31634485   PMID:31928221   PMID:31982428  
PMID:33035679  


Genomics

Comparative Map Data
Myocd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391165,064,434 - 65,160,815 (-)NCBIGRCm39mm39
GRCm39 Ensembl1165,067,387 - 65,160,815 (-)Ensembl
GRCm381165,173,608 - 65,269,989 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1165,176,561 - 65,269,989 (-)EnsemblGRCm38mm10GRCm38
MGSCv371164,990,063 - 65,083,491 (-)NCBIGRCm37mm9NCBIm37
MGSCv361164,992,756 - 65,086,175 (-)NCBImm8
Celera1172,112,506 - 72,207,425 (-)NCBICelera
Cytogenetic Map11B3NCBI
MYOCD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1712,665,890 - 12,768,949 (+)EnsemblGRCh38hg38GRCh38
GRCh381712,665,890 - 12,768,949 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371712,569,207 - 12,672,266 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361712,510,231 - 12,607,686 (+)NCBINCBI36hg18NCBI36
Build 341712,510,230 - 12,607,686NCBI
Celera1712,594,549 - 12,695,987 (+)NCBI
Cytogenetic Map17p12NCBI
HuRef1712,464,600 - 12,566,080 (+)NCBIHuRef
CHM1_11712,577,982 - 12,679,406 (+)NCBICHM1_1
Myocd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21049,833,219 - 49,928,806 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1049,836,641 - 49,927,627 (-)Ensembl
Rnor_6.01051,682,053 - 51,781,458 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1051,683,540 - 51,778,986 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01051,439,727 - 51,534,567 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41051,496,223 - 51,588,226 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11051,509,851 - 51,601,849 (-)NCBI
Celera1049,052,568 - 49,143,747 (-)NCBICelera
Cytogenetic Map10q24NCBI
Myocd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554674,656,380 - 4,743,110 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554674,653,065 - 4,743,438 (-)NCBIChiLan1.0ChiLan1.0
MYOCD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11743,578,967 - 43,681,659 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1743,584,259 - 43,681,659 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01738,880,120 - 38,983,246 (-)NCBIMhudiblu_PPA_v0panPan3
MYOCD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1536,674,476 - 36,774,435 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl536,674,300 - 36,769,327 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha536,774,863 - 36,918,323 (+)NCBI
ROS_Cfam_1.0536,738,753 - 36,883,183 (+)NCBI
UMICH_Zoey_3.1536,711,643 - 36,856,024 (+)NCBI
UNSW_CanFamBas_1.0536,659,301 - 36,802,936 (+)NCBI
UU_Cfam_GSD_1.0536,843,479 - 36,993,391 (+)NCBI
Myocd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560251,782,304 - 51,881,336 (+)NCBI
SpeTri2.0NW_0049365955,256,615 - 5,356,563 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYOCD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1256,931,317 - 57,029,538 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11256,931,628 - 57,029,258 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21259,928,695 - 59,945,526 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MYOCD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11611,923,464 - 12,100,897 (+)NCBI
ChlSab1.1 Ensembl1612,000,197 - 12,095,552 (+)Ensembl
Vero_WHO_p1.0NW_0236660599,137,934 - 9,239,568 (-)NCBI
Myocd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624877618,789 - 647,471 (+)NCBI

Position Markers
D11Mit177  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381165,212,885 - 65,213,015UniSTSGRCm38
MGSCv371165,026,387 - 65,026,517UniSTSGRCm37
Celera1172,150,313 - 72,150,429UniSTS
Cytogenetic Map11B3UniSTS
cM Map1136.0UniSTS
Whitehead Genetic1133.9UniSTS
Whitehead/MRC_RH11855.46UniSTS
Whitehead_YAC11 UniSTS
Myocd  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381165,178,448 - 65,178,889UniSTSGRCm38
MGSCv371164,991,950 - 64,992,391UniSTSGRCm37
Celera1172,114,397 - 72,114,838UniSTS
Cytogenetic Map11B3UniSTS
cM Map11 UniSTS
PMC150745P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381165,187,027 - 65,187,135UniSTSGRCm38
MGSCv371165,000,529 - 65,000,637UniSTSGRCm37
Celera1172,122,963 - 72,123,071UniSTS
Cytogenetic Map11B3UniSTS
PMC309615P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381165,187,392 - 65,187,685UniSTSGRCm38
MGSCv371165,000,894 - 65,001,187UniSTSGRCm37
Celera1172,123,328 - 72,123,621UniSTS
Cytogenetic Map11B3UniSTS
PMC309615P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381165,184,488 - 65,184,631UniSTSGRCm38
MGSCv371164,997,990 - 64,998,133UniSTSGRCm37
Celera1172,120,424 - 72,120,567UniSTS
Cytogenetic Map11B3UniSTS
Myocd  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B3UniSTS
Myocd  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111160000068600000Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111180000066100000Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1231863768609504Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111231863768609504Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111231863768609504Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1231863768609504Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1231863768609504Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111231863768609504Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1231863768609504Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1231863768609504Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1231863768609504Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111231863768609504Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111231863768609504Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111231863769794121Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111710617567187585Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111783196668609504Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113220975066209867Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113568778969794161Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113661246070618665Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113672273870723028Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115417484467187585Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115419011565213015Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5539415972319101Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115936579169591873Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
4141642Ltxs2_mlethal factor toxin susceptibility 2 (mouse)Not determined116315128768609504Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1697
Count of miRNA genes:537
Interacting mature miRNAs:674
Transcripts:ENSMUST00000101042, ENSMUST00000102635, ENSMUST00000108695, ENSMUST00000144399, ENSMUST00000150823, ENSMUST00000151483
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000101042   ⟹   ENSMUSP00000098603
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1165,069,254 - 65,109,385 (-)Ensembl
GRCm38.p6 Ensembl1165,178,428 - 65,218,559 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102635   ⟹   ENSMUSP00000099695
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1165,067,387 - 65,160,767 (-)Ensembl
GRCm38.p6 Ensembl1165,176,561 - 65,269,941 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108695   ⟹   ENSMUSP00000104335
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1165,067,400 - 65,160,815 (-)Ensembl
GRCm38.p6 Ensembl1165,176,574 - 65,269,989 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144399   ⟹   ENSMUSP00000115572
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1165,086,928 - 65,096,293 (-)Ensembl
GRCm38.p6 Ensembl1165,196,102 - 65,205,467 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150823
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1165,114,560 - 65,160,680 (-)Ensembl
GRCm38.p6 Ensembl1165,223,734 - 65,269,854 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151483
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1165,067,599 - 65,072,983 (-)Ensembl
GRCm38.p6 Ensembl1165,176,773 - 65,182,157 (-)Ensembl
RefSeq Acc Id: NM_145136   ⟹   NP_660118
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391165,067,387 - 65,160,815 (-)NCBI
GRCm381165,176,561 - 65,269,989 (-)NCBI
MGSCv371164,990,063 - 65,083,491 (-)RGD
Celera1172,112,506 - 72,207,425 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_146386   ⟹   NP_666498
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391165,067,387 - 65,160,815 (-)NCBI
GRCm381165,176,561 - 65,269,989 (-)NCBI
MGSCv371164,990,063 - 65,083,491 (-)RGD
Celera1172,112,506 - 72,207,425 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011248893   ⟹   XP_011247195
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391165,064,434 - 65,160,630 (-)NCBI
GRCm381165,173,608 - 65,269,804 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248895   ⟹   XP_011247197
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391165,064,434 - 65,160,488 (-)NCBI
GRCm381165,173,608 - 65,269,662 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_660118   ⟸   NM_145136
- Peptide Label: isoform A
- UniProtKB: Q8VIM5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_666498   ⟸   NM_146386
- Peptide Label: isoform B
- UniProtKB: Q8VIM5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011247197   ⟸   XM_011248895
- Peptide Label: isoform X2
- UniProtKB: Q8VIM5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011247195   ⟸   XM_011248893
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000115572   ⟸   ENSMUST00000144399
RefSeq Acc Id: ENSMUSP00000098603   ⟸   ENSMUST00000101042
RefSeq Acc Id: ENSMUSP00000104335   ⟸   ENSMUST00000108695
RefSeq Acc Id: ENSMUSP00000099695   ⟸   ENSMUST00000102635
Protein Domains
SAP

Promoters
RGD ID:8675038
Promoter ID:EPDNEW_M15550
Type:multiple initiation site
Name:Myocd_1
Description:Mus musculus myocardin , transcript variant B, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381165,269,995 - 65,270,055EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2137495 AgrOrtholog
Ensembl Genes ENSMUSG00000020542 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000098603 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000099695 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000104335 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000115572 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000101042 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000102635 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000108695 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000144399 UniProtKB/TrEMBL
Gene3D-CATH 1.10.720.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Myocardin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MYOCD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RPEL_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAP_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:214384 UniProtKB/Swiss-Prot
MGD MGI:2137495 ENTREZGENE
NCBI Gene 214384 ENTREZGENE
PANTHER PTHR22793 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR22793:SF11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RPEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Myocd PhenoGen
PROSITE RPEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RPEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF68906 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B9EJ16_MOUSE UniProtKB/TrEMBL
  F6TBX6_MOUSE UniProtKB/TrEMBL
  MYCD_MOUSE UniProtKB/Swiss-Prot
  Q3US93_MOUSE UniProtKB/TrEMBL
  Q8VIM5 ENTREZGENE
UniProt Secondary Q5SS65 UniProtKB/Swiss-Prot
  Q6W8X1 UniProtKB/Swiss-Prot
  Q8C3W6 UniProtKB/Swiss-Prot
  Q8VIL4 UniProtKB/Swiss-Prot