Proca1 (protein interacting with cyclin A1) - Rat Genome Database
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Gene: Proca1 (protein interacting with cyclin A1) Mus musculus
Analyze
Symbol: Proca1
Name: protein interacting with cyclin A1
RGD ID: 1614952
MGI Page MGI
Description: Predicted to have cyclin binding activity. Orthologous to human PROCA1 (protein interacting with cyclin A1); INTERACTS WITH 1,2-dichloroethane; 2,2',4,4',5,5'-hexachlorobiphenyl; 2,2',5,5'-tetrachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 4933404M19Rik; RP23-185A18.6
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391178,083,086 - 78,096,589 (+)NCBIGRCm39mm39
GRCm381178,192,677 - 78,205,763 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,193,392 - 78,205,763 (+)EnsemblGRCm38mm10GRCm38
MGSCv371178,006,894 - 78,019,265 (+)NCBIGRCm37mm9NCBIm37
MGSCv361178,011,068 - 78,021,957 (+)NCBImm8
Celera1186,225,728 - 86,234,225 (-)NCBICelera
Cytogenetic Map11B5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21677750  


Genomics

Comparative Map Data
Proca1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391178,083,086 - 78,096,589 (+)NCBIGRCm39mm39
GRCm381178,192,677 - 78,205,763 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,193,392 - 78,205,763 (+)EnsemblGRCm38mm10GRCm38
MGSCv371178,006,894 - 78,019,265 (+)NCBIGRCm37mm9NCBIm37
MGSCv361178,011,068 - 78,021,957 (+)NCBImm8
Celera1186,225,728 - 86,234,225 (-)NCBICelera
Cytogenetic Map11B5NCBI
PROCA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1728,703,197 - 28,711,854 (-)EnsemblGRCh38hg38GRCh38
GRCh381728,703,197 - 28,712,065 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371727,030,215 - 27,038,906 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh371727,030,214 - 27,039,127 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361724,054,661 - 24,062,999 (-)NCBINCBI36hg18NCBI36
Celera1723,889,570 - 23,898,038 (-)NCBI
Cytogenetic Map17q11.2NCBI
HuRef1723,239,164 - 23,247,772 (-)NCBIHuRef
CHM1_11727,092,687 - 27,101,397 (-)NCBICHM1_1
Proca1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21063,090,018 - 63,102,941 (+)NCBI
Rnor_6.0 Ensembl1065,454,658 - 65,469,490 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01065,454,451 - 65,469,491 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01066,167,555 - 66,180,522 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41064,426,828 - 64,440,614 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1062,067,529 - 62,080,628 (+)NCBICelera
Cytogenetic Map10q25NCBI
Proca1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554814,451,769 - 4,460,922 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554814,451,649 - 4,461,296 (+)NCBIChiLan1.0ChiLan1.0
PROCA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11728,568,429 - 28,577,232 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1728,568,429 - 28,577,232 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01728,063,498 - 28,072,327 (+)NCBIMhudiblu_PPA_v0panPan3
PROCA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl942,897,392 - 42,904,432 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1942,897,015 - 42,904,460 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Proca1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365384,911,915 - 4,921,281 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PROCA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1244,942,147 - 44,949,129 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11244,942,146 - 44,950,899 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21246,926,713 - 46,934,097 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PROCA1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11622,471,135 - 22,480,161 (-)NCBI
ChlSab1.1 Ensembl1622,470,629 - 22,474,767 (-)Ensembl
Proca1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247861,272,959 - 1,283,923 (-)NCBI

Position Markers
AI326479  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,192,031 - 78,192,128UniSTSGRCm38
MGSCv371178,005,533 - 78,005,630UniSTSGRCm37
Celera1186,235,489 - 86,235,586UniSTS
Cytogenetic Map11B5UniSTS
cM Map1144.89UniSTS
Whitehead/MRC_RH11982.6UniSTS
D11Seg8  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,200,014 - 78,200,384UniSTSGRCm38
MGSCv371178,013,516 - 78,013,886UniSTSGRCm37
Celera1186,227,245 - 86,227,615UniSTS
Cytogenetic Map11B5UniSTS
cM Map1144.91UniSTS
D11Seg9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,205,045 - 78,205,173UniSTSGRCm38
MGSCv371178,018,547 - 78,018,675UniSTSGRCm37
Cytogenetic Map11B5UniSTS
cM Map1144.91UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117231897084840636Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
12903994Opfaq3_mopen field activity QTL 3 (mouse)117384671582178599Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177172953111173092Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177546357111546496Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177546357111546496Mouse
4141365Ltxs3_mlethal factor toxin susceptibility 3 (mouse)Not determined117768304780855532Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117768304799486994Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177880152111880273Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1127
Count of miRNA genes:553
Interacting mature miRNAs:664
Transcripts:ENSMUST00000060539, ENSMUST00000078099, ENSMUST00000108317, ENSMUST00000124772
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000060539   ⟹   ENSMUSP00000050319
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1178,194,704 - 78,205,467 (+)Ensembl
RefSeq Acc Id: ENSMUST00000078099   ⟹   ENSMUSP00000086022
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1178,193,392 - 78,205,504 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108317   ⟹   ENSMUSP00000103953
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1178,194,734 - 78,205,763 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124772
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1178,194,746 - 78,205,408 (+)Ensembl
RefSeq Acc Id: ENSMUST00000239287
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1178,194,065 - 78,205,504 (+)Ensembl
RefSeq Acc Id: NM_001045516   ⟹   NP_001038981
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,084,218 - 78,096,589 (+)NCBI
GRCm381178,193,392 - 78,205,763 (+)ENTREZGENE
MGSCv371178,006,894 - 78,019,265 (+)RGD
Celera1186,225,728 - 86,234,225 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001368876   ⟹   NP_001355805
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,085,528 - 78,096,589 (+)NCBI
GRCm381178,194,702 - 78,205,763 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245840   ⟹   XP_030101700
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,083,086 - 78,096,589 (+)NCBI
GRCm381178,192,677 - 78,205,763 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156580   ⟹   XP_036012473
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,084,891 - 78,096,589 (+)NCBI
RefSeq Acc Id: XM_036156581   ⟹   XP_036012474
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,085,154 - 78,096,589 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001038981   ⟸   NM_001045516
- Peptide Label: isoform 2
- UniProtKB: B0QZF6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030101700   ⟸   XM_030245840
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001355805   ⟸   NM_001368876
- Peptide Label: isoform 1
RefSeq Acc Id: ENSMUSP00000103953   ⟸   ENSMUST00000108317
RefSeq Acc Id: ENSMUSP00000050319   ⟸   ENSMUST00000060539
RefSeq Acc Id: ENSMUSP00000086022   ⟸   ENSMUST00000078099
RefSeq Acc Id: XP_036012473   ⟸   XM_036156580
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036012474   ⟸   XM_036156581
- Peptide Label: isoform X1

Promoters
RGD ID:6821607
Promoter ID:MM_KWN:8676
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Kidney,   Lung,   MEF_B6
Transcripts:ENSMUST00000060539,   ENSMUST00000108317
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361178,007,296 - 78,008,542 (+)MPROMDB
RGD ID:6821814
Promoter ID:MM_KWN:8677
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung
Transcripts:OTTMUST00000000332
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361178,016,986 - 78,017,537 (+)MPROMDB
RGD ID:8675694
Promoter ID:EPDNEW_M15878
Type:initiation region
Name:Proca1_1
Description:Mus musculus protein interacting with cyclin A1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15879  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381178,193,395 - 78,193,455EPDNEW
RGD ID:8675696
Promoter ID:EPDNEW_M15879
Type:initiation region
Name:Proca1_2
Description:Mus musculus protein interacting with cyclin A1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15878  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381178,194,702 - 78,194,762EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1918274 AgrOrtholog
Ensembl Genes ENSMUSG00000044122 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000050319 UniProtKB/TrEMBL
  ENSMUSP00000086022 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000103953 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000060539 UniProtKB/TrEMBL
  ENSMUST00000078099 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000108317 ENTREZGENE, UniProtKB/Swiss-Prot
KEGG Report mmu:216974 UniProtKB/TrEMBL
MGD MGI:1918274 ENTREZGENE
NCBI Gene 216974 ENTREZGENE
PhenoGen Proca1 PhenoGen
UniProt B0QZF6 ENTREZGENE, UniProtKB/TrEMBL
  B0QZF7 ENTREZGENE
  F6V8V6_MOUSE UniProtKB/TrEMBL
  PRCA1_MOUSE UniProtKB/Swiss-Prot