Gm41 (predicted pseudogene 41) - Rat Genome Database

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Gene: Gm41 (predicted pseudogene 41) Mus musculus
Analyze
Symbol: Gm41
Name: predicted pseudogene 41
RGD ID: 1614882
MGI Page MGI
Description:
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
Related Functional Gene: Mageb4  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X85,389,081 - 85,398,600 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX85,388,429 - 85,389,451 (-)EnsemblGRCm39 Ensembl
GRCm38X86,345,475 - 86,354,994 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX86,344,823 - 86,345,845 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X83,590,161 - 83,596,556 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X82,597,542 - 82,607,742 (-)NCBIMGSCv36mm8
CeleraX77,538,849 - 77,546,423 (-)NCBICelera
Cytogenetic MapXC1NCBI
cM MapX39.79NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21267068  


Genomics

Variants

.
Variants in Gm41
281 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:66
Count of miRNA genes:61
Interacting mature miRNAs:63
Transcripts:ENSMUST00000116183
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13464140Hdlq108_mHDL QTL 108 (mouse)X5777196091771960Mouse
25314311Syncl3_msynaptonemal complex length 3 (mouse)X5198887789743606Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
1357500Mdmsc6_mmodifier of muscularity 6 (mouse)Not determinedX75306671109306758Mouse
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX3992149886260137Mouse
12879918Shm4_msperm head morphology 4 (mouse)X72072050102062720Mouse
25314318Sccor2_msynaptonemal complex length to mean MLH1 count ratio 2 (mouse)X7054360696543606Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
25314316Mlh1fc3_mMLH1 foci count 3 (mouse)X6134360689843606Mouse
10412108Desp5_mdespair 5 (mouse)Not determinedX5472235188722351Mouse
4141803Lmr30_mleishmaniasis resistance 30 (mouse)Not determined85062606119062720Mouse
1302054Gct4_mgranulosa cell tumorigenesis 4 (mouse)Not determinedX76124336102062720Mouse
11075102Modc2_mmodifier of Odc2 (mouse)X80189914114190059Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000116183
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX85,388,429 - 85,389,451 (-)Ensembl
GRCm38.p6 EnsemblX86,344,823 - 86,345,845 (-)Ensembl
RefSeq Acc Id: NR_036689
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X85,389,081 - 85,398,600 (-)NCBI
GRCm38X86,345,475 - 86,354,994 (-)ENTREZGENE
CeleraX77,539,502 - 77,550,200 (-)ENTREZGENE
cM MapX ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein EDL29146 (Get FASTA)   NCBI Sequence Viewer  


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000080069 Ensembl
MGD MGI:2684887 ENTREZGENE
NCBI Gene 245502 ENTREZGENE
PhenoGen Gm41 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Gm41  predicted pseudogene 41  Gm41  predicted gene 41  Symbol and/or name change 5135510 APPROVED