Gm614 (predicted gene 614) - Rat Genome Database

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Gene: Gm614 (predicted gene 614) Mus musculus
Analyze
Symbol: Gm614
Name: predicted gene 614
RGD ID: 1614874
MGI Page MGI
Description: Orthologous to human CXorf65 (chromosome X open reading frame 65).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC245536; Il2rg; interleukin 2 receptor, gamma chain; RP23-440J15.1; uncharacterized protein CXorf65 homolog
RGD Orthologs
Human
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X100,304,979 - 100,307,598 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX100,304,982 - 100,307,598 (-)EnsemblGRCm39 Ensembl
GRCm38X101,261,373 - 101,263,992 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX101,261,376 - 101,263,992 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X98,456,716 - 98,459,331 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X97,464,096 - 97,466,711 (-)NCBIMGSCv36mm8
CeleraX88,177,507 - 88,180,163 (-)NCBICelera
Cytogenetic MapXDNCBI
cM MapX43.9NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:33193409  


Genomics

Comparative Map Data
Gm614
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X100,304,979 - 100,307,598 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX100,304,982 - 100,307,598 (-)EnsemblGRCm39 Ensembl
GRCm38X101,261,373 - 101,263,992 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX101,261,376 - 101,263,992 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X98,456,716 - 98,459,331 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X97,464,096 - 97,466,711 (-)NCBIMGSCv36mm8
CeleraX88,177,507 - 88,180,163 (-)NCBICelera
Cytogenetic MapXDNCBI
cM MapX43.9NCBI
CXorf65
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X71,103,889 - 71,106,740 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX71,103,889 - 71,106,788 (-)EnsemblGRCh38hg38GRCh38
GRCh37X70,323,739 - 70,326,590 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X70,240,562 - 70,243,145 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX70,677,642 - 70,680,541 (-)NCBICelera
Cytogenetic MapXq13.1NCBI
HuRefX64,143,458 - 64,146,357 (-)NCBIHuRef
CHM1_1X70,216,078 - 70,218,973 (-)NCBICHM1_1
T2T-CHM13v2.0X69,537,985 - 69,540,832 (-)NCBIT2T-CHM13v2.0
CUNHXorf65
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547510,674,197 - 10,677,048 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547510,674,333 - 10,676,485 (-)NCBIChiLan1.0ChiLan1.0
CXHXorf65
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X70,781,586 - 70,784,520 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X70,785,201 - 70,788,653 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X60,372,451 - 60,375,636 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X70,430,350 - 70,432,726 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX70,430,424 - 70,432,508 (-)Ensemblpanpan1.1panPan2
CXHXorf65
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X55,478,132 - 55,480,215 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX55,478,164 - 55,480,029 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX46,305,177 - 46,307,301 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X56,447,017 - 56,449,141 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX56,447,072 - 56,448,937 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X54,415,250 - 54,417,374 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X55,746,680 - 55,748,804 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X55,673,820 - 55,675,944 (-)NCBIUU_Cfam_GSD_1.0
CXHXorf65
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X46,728,974 - 46,731,311 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936762491,580 - 493,455 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936762491,580 - 493,455 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CXHXorf65
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX57,140,831 - 57,143,151 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X57,139,975 - 57,143,070 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X64,670,990 - 64,673,301 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNHXorf65
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X60,901,220 - 60,904,594 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX60,901,587 - 60,904,160 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660652,761,077 - 2,765,052 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNHXorf65
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249031,400,238 - 1,402,502 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gm614
52 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:299
Count of miRNA genes:185
Interacting mature miRNAs:198
Transcripts:ENSMUST00000101358, ENSMUST00000125656
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
12879918Shm4_msperm head morphology 4 (mouse)X72072050102062720Mouse
1357500Mdmsc6_mmodifier of muscularity 6 (mouse)Not determinedX75306671109306758Mouse
1302054Gct4_mgranulosa cell tumorigenesis 4 (mouse)Not determinedX76124336102062720Mouse
11075102Modc2_mmodifier of Odc2 (mouse)X80189914114190059Mouse
4141803Lmr30_mleishmaniasis resistance 30 (mouse)Not determined85062606119062720Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse

Markers in Region
D13565  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X101,264,730 - 101,264,810UniSTSGRCm38
MGSCv37X98,460,069 - 98,460,149UniSTSGRCm37
CeleraX88,180,901 - 88,180,981UniSTS
Cytogenetic MapXDUniSTS
cM MapX38.0UniSTS
Whitehead/MRC_RHX1117.13UniSTS
U21795  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X101,264,625 - 101,264,800UniSTSGRCm38
MGSCv37X98,459,964 - 98,460,139UniSTSGRCm37
CeleraX88,180,796 - 88,180,971UniSTS
Cytogenetic MapXDUniSTS
cM MapX38.0UniSTS
Whitehead/MRC_RHX1117.13UniSTS
Whitehead_YACX UniSTS
Il2rg  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X101,264,987 - 101,265,433UniSTSGRCm38
MGSCv37X98,460,326 - 98,460,772UniSTSGRCm37
CeleraX88,181,158 - 88,181,604UniSTS
Cytogenetic MapXDUniSTS
cM MapX38.0UniSTS
U21795  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X101,264,316 - 101,264,462UniSTSGRCm38
MGSCv37X98,459,655 - 98,459,801UniSTSGRCm37
CeleraX88,180,487 - 88,180,633UniSTS
Cytogenetic MapXDUniSTS
Whitehead/MRC_RHX1117.13UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000101358   ⟹   ENSMUSP00000098910
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX100,304,982 - 100,307,598 (-)Ensembl
GRCm38.p6 EnsemblX101,261,376 - 101,263,992 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125656
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX100,304,982 - 100,307,581 (-)Ensembl
GRCm38.p6 EnsemblX101,261,376 - 101,263,975 (-)Ensembl
RefSeq Acc Id: NM_001033362   ⟹   NP_001028534
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X100,304,979 - 100,307,598 (-)NCBI
GRCm38X101,261,373 - 101,263,992 (-)NCBI
MGSCv37X98,456,716 - 98,459,331 (-)RGD
CeleraX88,177,507 - 88,180,163 (-)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001317221   ⟹   NP_001304150
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X100,304,979 - 100,307,598 (-)NCBI
GRCm38X101,261,373 - 101,263,992 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001028534 (Get FASTA)   NCBI Sequence Viewer  
  NP_001304150 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI47524 (Get FASTA)   NCBI Sequence Viewer  
  AAI47538 (Get FASTA)   NCBI Sequence Viewer  
  BAE20796 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000098910
  ENSMUSP00000098910.3
GenBank Protein Q3V2K1 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001028534   ⟸   NM_001033362
- Peptide Label: isoform 1
- UniProtKB: Q3V2K1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001304150   ⟸   NM_001317221
- Peptide Label: isoform 2
- Sequence:
RefSeq Acc Id: ENSMUSP00000098910   ⟸   ENSMUST00000101358

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3V2K1-F1-model_v2 AlphaFold Q3V2K1 1-191 view protein structure

Promoters
RGD ID:6845788
Promoter ID:MM_KWN:61303
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Lung
Transcripts:OTTMUST00000043952,   UC009TXB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X98,459,186 - 98,460,287 (-)MPROMDB
RGD ID:13681060
Promoter ID:EPDNEW_M24679
Type:initiation region
Name:Gm614_1
Description:Mus musculus predicted gene 614 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X101,263,992 - 101,264,052EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2685460 AgrOrtholog
Ensembl Genes ENSMUSG00000090141 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000101358 ENTREZGENE
  ENSMUST00000101358.3 UniProtKB/Swiss-Prot
  ENSMUST00000125656 ENTREZGENE
InterPro CXorf65-like UniProtKB/Swiss-Prot
KEGG Report mmu:245536 UniProtKB/Swiss-Prot
MGD MGI:2685460 ENTREZGENE
NCBI Gene 245536 ENTREZGENE
PANTHER AB2-183 UniProtKB/Swiss-Prot
  PTHR33887 UniProtKB/Swiss-Prot
Pfam Il2rg UniProtKB/Swiss-Prot
PhenoGen Gm614 PhenoGen
UniProt CX065_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE