9530059O14Rik (RIKEN cDNA 9530059O14 gene) - Rat Genome Database
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Gene: 9530059O14Rik (RIKEN cDNA 9530059O14 gene) Mus musculus
Analyze
Symbol: 9530059O14Rik
Name: RIKEN cDNA 9530059O14 gene
RGD ID: 1614824
MGI Page MGI
Description:
Type: ncrna
RefSeq Status: VALIDATED
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399122,401,566 - 122,409,712 (+)NCBIGRCm39mm39
GRCm389122,572,501 - 122,580,647 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9122,572,499 - 122,679,596 (+)EnsemblGRCm38mm10GRCm38
MGSCv379122,481,619 - 122,489,765 (+)NCBIGRCm37mm9NCBIm37
MGSCv369122,420,265 - 122,428,474 (+)NCBImm8
Celera9123,030,493 - 123,038,646 (+)NCBICelera
Cytogenetic Map9F4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Position Markers
C87314  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389122,580,331 - 122,580,530UniSTSGRCm38
MGSCv379122,489,449 - 122,489,648UniSTSGRCm37
Celera9123,038,330 - 123,038,529UniSTS
Cytogenetic Map9F4UniSTS
Whitehead/MRC_RH91217.17UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:310
Count of miRNA genes:260
Interacting mature miRNAs:281
Transcripts:ENSMUST00000181107, ENSMUST00000181682, ENSMUST00000181719
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000181107
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9122,572,501 - 122,580,647 (+)Ensembl
RefSeq Acc Id: ENSMUST00000181682
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9122,572,499 - 122,678,965 (+)Ensembl
RefSeq Acc Id: ENSMUST00000181719
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9122,572,502 - 122,679,596 (+)Ensembl
RefSeq Acc Id: ENSMUST00000215759
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9122,572,502 - 122,678,250 (+)Ensembl
RefSeq Acc Id: NR_015610
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399122,401,566 - 122,409,712 (+)NCBI
GRCm389122,572,501 - 122,580,647 (+)ENTREZGENE
MGSCv379122,481,619 - 122,489,765 (+)RGD
Celera9123,030,493 - 123,038,646 (+)RGD
cM Map9 ENTREZGENE
Sequence:
Promoters
RGD ID:6844008
Promoter ID:MM_KWN:59240
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell
Transcripts:NR_015610,   UC009SFB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369122,481,316 - 122,481,816 (+)MPROMDB
RGD ID:8671300
Promoter ID:EPDNEW_M13680
Type:single initiation site
Name:9530059O14Rik_1
Description:Mus musculus RIKEN cDNA 9530059O14 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389122,572,502 - 122,572,562EPDNEW
RGD ID:15093693
Promoter ID:EPDNEWNC_M1608
Type:single initiation site
Name:9530059O14Rik_1
Description:RIKEN cDNA 9530059O14 gene [Source:MGISymbol;Acc:MGI:2442421]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389122,572,502 - 122,572,562EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097736 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000181107 ENTREZGENE
MGD MGI:2442421 ENTREZGENE
NCBI Gene 319626 ENTREZGENE
PhenoGen 9530059O14Rik PhenoGen
RNAcentral URS00009B4A6B RNACentral