Atxn7l1 (ataxin 7-like 1) - Rat Genome Database

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Gene: Atxn7l1 (ataxin 7-like 1) Mus musculus
Analyze
Symbol: Atxn7l1
Name: ataxin 7-like 1
RGD ID: 1614792
MGI Page MGI
Description: Orthologous to human ATXN7L1 (ataxin 7 like 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810423G08Rik; ataxin 7-like 4; ataxin-7-like protein 1; Atxn; Atxn7l4; MGC28883
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391233,196,967 - 33,426,407 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1233,197,692 - 33,423,184 (+)EnsemblGRCm39 Ensembl
GRCm381233,146,968 - 33,376,408 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1233,147,693 - 33,373,185 (+)EnsemblGRCm38mm10GRCm38
MGSCv371233,832,551 - 34,053,142 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361233,887,798 - 33,953,520 (+)NCBIMGSCv36mm8
Celera1234,597,134 - 34,812,636 (+)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1214.03NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12040188   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15489334  
PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068  


Genomics

Comparative Map Data
Atxn7l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391233,196,967 - 33,426,407 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1233,197,692 - 33,423,184 (+)EnsemblGRCm39 Ensembl
GRCm381233,146,968 - 33,376,408 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1233,147,693 - 33,373,185 (+)EnsemblGRCm38mm10GRCm38
MGSCv371233,832,551 - 34,053,142 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361233,887,798 - 33,953,520 (+)NCBIMGSCv36mm8
Celera1234,597,134 - 34,812,636 (+)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1214.03NCBI
ATXN7L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387105,604,772 - 105,876,599 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7105,604,772 - 105,876,599 (-)EnsemblGRCh38hg38GRCh38
GRCh377105,245,219 - 105,517,045 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367105,188,055 - 105,304,264 (-)NCBINCBI36Build 36hg18NCBI36
Build 347104,994,769 - 105,110,979NCBI
Celera7100,050,314 - 100,322,052 (-)NCBICelera
Cytogenetic Map7q22.3NCBI
HuRef799,603,460 - 99,874,805 (-)NCBIHuRef
CHM1_17105,178,559 - 105,450,676 (-)NCBICHM1_1
T2T-CHM13v2.07106,918,950 - 107,191,449 (-)NCBIT2T-CHM13v2.0
Atxn7l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8655,487,309 - 55,709,751 (+)NCBIGRCr8
mRatBN7.2649,759,876 - 49,982,323 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl649,759,883 - 49,982,320 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0652,459,930 - 52,680,552 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl652,459,946 - 52,675,574 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0662,083,357 - 62,302,011 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.1651,491,170 - 51,596,750 (+)NCBI
Celera648,950,501 - 49,171,867 (+)NCBICelera
Cytogenetic Map6q16NCBI
Atxn7l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541010,167,187 - 10,226,155 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541010,167,196 - 10,391,362 (-)NCBIChiLan1.0ChiLan1.0
ATXN7L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26142,455,632 - 142,722,059 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17190,720,280 - 190,992,018 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0797,594,803 - 97,861,463 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17110,325,150 - 110,590,054 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7110,327,942 - 110,590,021 (-)Ensemblpanpan1.1panPan2
ATXN7L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11814,661,497 - 14,821,041 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1814,661,497 - 14,816,575 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1814,227,049 - 14,472,079 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01814,877,168 - 15,123,147 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1814,854,414 - 15,118,685 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11814,664,576 - 14,909,495 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01814,586,766 - 14,832,518 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01814,867,138 - 15,112,465 (+)NCBIUU_Cfam_GSD_1.0
Atxn7l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511856,926,069 - 57,163,401 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647918,049,847 - 18,287,213 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647918,049,860 - 18,287,175 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATXN7L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9105,464,484 - 105,799,064 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19105,464,614 - 105,925,637 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29116,232,446 - 116,608,014 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATXN7L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12174,525,581 - 74,796,167 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2174,525,184 - 74,796,133 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604229,115,143 - 29,390,520 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atxn7l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473923,930,133 - 23,973,480 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473923,754,290 - 23,976,754 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atxn7l1
7341 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5191
Count of miRNA genes:996
Interacting mature miRNAs:1470
Transcripts:ENSMUST00000077456, ENSMUST00000090597, ENSMUST00000110824, ENSMUST00000125192, ENSMUST00000126275, ENSMUST00000130740, ENSMUST00000133549, ENSMUST00000136644, ENSMUST00000142184, ENSMUST00000144586, ENSMUST00000145589, ENSMUST00000146040, ENSMUST00000154742, ENSMUST00000155386
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301207Circp1_mcircadian photosensitivity 1 (mouse)Not determined12133430339Mouse
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1234013434340302Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12805000040049999Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12835244442352581Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12949100443491112Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
14746972Manh72_mmandible shape 72 (mouse)121061528144615281Mouse
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121062064244620809Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4141516slwr_mslowlearner (mouse)Not determined1239247546392614Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121514733149147331Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121615000147746783Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121782585251825852Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121783993951840081Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121973983353739833Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse

Markers in Region
mHAa21f4.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381233,215,989 - 33,216,075UniSTSGRCm38
MGSCv371233,900,854 - 33,900,940UniSTSGRCm37
Celera1234,665,291 - 34,665,377UniSTS
Cytogenetic Map12A3UniSTS
Whitehead_YAC12 UniSTS
D12Mit146  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381233,188,578 - 33,188,729UniSTSGRCm38
MGSCv371233,873,443 - 33,873,594UniSTSGRCm37
Celera1234,637,987 - 34,638,138UniSTS
Cytogenetic Map12A3UniSTS
cM Map1214.0UniSTS
Whitehead Genetic1210.9UniSTS
Whitehead/MRC_RH12314.93UniSTS
Whitehead_YAC12 UniSTS
UniSTS:236829  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381233,167,047 - 33,167,365UniSTSGRCm38
MGSCv371233,851,912 - 33,852,230UniSTSGRCm37
Celera1234,616,469 - 34,616,787UniSTS
Cytogenetic Map12A3UniSTS
UniSTS:236830  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381233,221,787 - 33,221,874UniSTSGRCm38
MGSCv371233,906,652 - 33,906,739UniSTSGRCm37
Celera1234,672,432 - 34,672,519UniSTS
Cytogenetic Map12A3UniSTS
MARC_13945-13946:1007583817:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381233,147,749 - 33,148,490UniSTSGRCm38
MGSCv371233,832,614 - 33,833,355UniSTSGRCm37
Celera1234,597,197 - 34,597,938UniSTS
Cytogenetic Map12A3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001033436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001374022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001374023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001374024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001374025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001374026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC132312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC132354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC160112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB843098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC100598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC147479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC147483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY019350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY203850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000077456   ⟹   ENSMUSP00000076668
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,197,692 - 33,301,145 (+)Ensembl
GRCm38.p6 Ensembl1233,147,693 - 33,251,146 (+)Ensembl
RefSeq Acc Id: ENSMUST00000090597   ⟹   ENSMUSP00000088085
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,352,514 - 33,418,272 (+)Ensembl
GRCm38.p6 Ensembl1233,302,515 - 33,368,273 (+)Ensembl
RefSeq Acc Id: ENSMUST00000110824   ⟹   ENSMUSP00000106448
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,197,710 - 33,301,145 (+)Ensembl
GRCm38.p6 Ensembl1233,147,711 - 33,251,146 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125192   ⟹   ENSMUSP00000118777
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,197,788 - 33,423,044 (+)Ensembl
GRCm38.p6 Ensembl1233,147,789 - 33,373,045 (+)Ensembl
RefSeq Acc Id: ENSMUST00000126275
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,395,304 - 33,418,277 (+)Ensembl
GRCm38.p6 Ensembl1233,345,305 - 33,368,278 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130740
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,197,773 - 33,376,132 (+)Ensembl
GRCm38.p6 Ensembl1233,147,774 - 33,326,133 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133549
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,364,276 - 33,394,940 (+)Ensembl
GRCm38.p6 Ensembl1233,314,277 - 33,344,941 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136644   ⟹   ENSMUSP00000151520
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,197,804 - 33,378,848 (+)Ensembl
GRCm38.p6 Ensembl1233,147,805 - 33,328,849 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142184
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,417,323 - 33,423,184 (+)Ensembl
GRCm38.p6 Ensembl1233,367,324 - 33,373,185 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144586   ⟹   ENSMUSP00000151570
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,364,288 - 33,378,848 (+)Ensembl
GRCm38.p6 Ensembl1233,314,289 - 33,328,849 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145589
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,365,404 - 33,376,203 (+)Ensembl
GRCm38.p6 Ensembl1233,315,405 - 33,326,204 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146040   ⟹   ENSMUSP00000122156
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,197,753 - 33,423,029 (+)Ensembl
GRCm38.p6 Ensembl1233,147,754 - 33,373,030 (+)Ensembl
RefSeq Acc Id: ENSMUST00000154742   ⟹   ENSMUSP00000122982
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,365,396 - 33,422,356 (+)Ensembl
GRCm38.p6 Ensembl1233,315,397 - 33,372,357 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155386
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,364,399 - 33,376,062 (+)Ensembl
GRCm38.p6 Ensembl1233,314,400 - 33,326,063 (+)Ensembl
RefSeq Acc Id: NM_001033436   ⟹   NP_001028608
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,352,514 - 33,418,276 (+)NCBI
GRCm381233,302,515 - 33,368,277 (+)NCBI
MGSCv371233,832,551 - 34,053,142 (+)RGD
Celera1234,597,134 - 34,812,636 (+)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001374022   ⟹   NP_001360951
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,196,970 - 33,418,274 (+)NCBI
GRCm381233,146,971 - 33,368,275 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001374023   ⟹   NP_001360952
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,196,967 - 33,426,407 (+)NCBI
GRCm381233,146,968 - 33,376,408 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001374024   ⟹   NP_001360953
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,365,404 - 33,418,274 (+)NCBI
GRCm381233,315,405 - 33,368,275 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001374025   ⟹   NP_001360954
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,364,296 - 33,418,274 (+)NCBI
GRCm381233,314,297 - 33,368,275 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001374026   ⟹   NP_001360955
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,365,404 - 33,418,274 (+)NCBI
GRCm381233,315,405 - 33,368,275 (+)NCBI
Sequence:
RefSeq Acc Id: NM_028139   ⟹   NP_082415
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,197,685 - 33,301,156 (+)NCBI
GRCm381233,147,686 - 33,251,157 (+)NCBI
MGSCv371233,832,551 - 34,053,142 (+)RGD
Celera1234,597,134 - 34,812,636 (+)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006515124   ⟹   XP_006515187
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,197,638 - 33,426,407 (+)NCBI
GRCm381233,147,635 - 33,376,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515125   ⟹   XP_006515188
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,197,638 - 33,425,821 (+)NCBI
GRCm381233,147,635 - 33,373,193 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515126   ⟹   XP_006515189
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,197,638 - 33,418,277 (+)NCBI
GRCm381233,147,635 - 33,368,278 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515128   ⟹   XP_006515191
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,197,638 - 33,418,277 (+)NCBI
GRCm381233,147,635 - 33,368,278 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515129   ⟹   XP_006515192
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,196,972 - 33,426,407 (+)NCBI
GRCm381233,147,635 - 33,376,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515130   ⟹   XP_006515193
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,196,972 - 33,425,821 (+)NCBI
GRCm381233,147,635 - 33,373,193 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515132   ⟹   XP_006515195
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,363,905 - 33,418,277 (+)NCBI
GRCm381233,313,896 - 33,368,278 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515133   ⟹   XP_006515196
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,352,382 - 33,418,277 (+)NCBI
GRCm381233,302,383 - 33,368,278 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515134   ⟹   XP_006515197
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,352,215 - 33,418,277 (+)NCBI
GRCm381233,302,213 - 33,368,278 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515136   ⟹   XP_006515199
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,387,002 - 33,418,277 (+)NCBI
GRCm381233,337,001 - 33,368,278 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011243881   ⟹   XP_011242183
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,365,384 - 33,426,407 (+)NCBI
GRCm381233,315,356 - 33,376,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017315123   ⟹   XP_017170612
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,364,399 - 33,418,277 (+)NCBI
GRCm381233,314,399 - 33,368,278 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017315124   ⟹   XP_017170613
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,387,170 - 33,418,277 (+)NCBI
GRCm381233,337,170 - 33,368,278 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246802   ⟹   XP_030102662
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,363,942 - 33,418,277 (+)NCBI
GRCm381233,313,915 - 33,368,278 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246803   ⟹   XP_030102663
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,376,055 - 33,418,277 (+)NCBI
GRCm381233,326,056 - 33,368,278 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157509   ⟹   XP_036013402
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,197,638 - 33,426,407 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157510   ⟹   XP_036013403
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391233,352,382 - 33,418,277 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001028608 (Get FASTA)   NCBI Sequence Viewer  
  NP_001360951 (Get FASTA)   NCBI Sequence Viewer  
  NP_001360952 (Get FASTA)   NCBI Sequence Viewer  
  NP_001360953 (Get FASTA)   NCBI Sequence Viewer  
  NP_001360954 (Get FASTA)   NCBI Sequence Viewer  
  NP_001360955 (Get FASTA)   NCBI Sequence Viewer  
  NP_082415 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515187 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515188 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515189 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515191 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515192 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515193 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515195 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515196 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515197 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515199 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242183 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170612 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170613 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102662 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102663 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013402 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013403 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH17546 (Get FASTA)   NCBI Sequence Viewer  
  AAI47480 (Get FASTA)   NCBI Sequence Viewer  
  AAI47484 (Get FASTA)   NCBI Sequence Viewer  
  BAB28677 (Get FASTA)   NCBI Sequence Viewer  
  BAE33547 (Get FASTA)   NCBI Sequence Viewer  
  BAE34571 (Get FASTA)   NCBI Sequence Viewer  
  EDL36877 (Get FASTA)   NCBI Sequence Viewer  
  EDL36878 (Get FASTA)   NCBI Sequence Viewer  
  EDL36879 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000076668.7
  ENSMUSP00000088085
  ENSMUSP00000088085.5
  ENSMUSP00000106448
  ENSMUSP00000106448.3
  ENSMUSP00000118777
  ENSMUSP00000118777.3
  ENSMUSP00000122156
  ENSMUSP00000122156.3
  ENSMUSP00000122982
  ENSMUSP00000122982.2
  ENSMUSP00000151520.2
  ENSMUSP00000151570.2
GenBank Protein Q9CZ05 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001028608   ⟸   NM_001033436
- Peptide Label: isoform 1
- UniProtKB: B2RW07 (UniProtKB/TrEMBL),   Q3U1F1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_082415   ⟸   NM_028139
- Peptide Label: isoform 2
- UniProtKB: Q8VD60 (UniProtKB/Swiss-Prot),   Q9CZ05 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006515189   ⟸   XM_006515126
- Peptide Label: isoform X3
- UniProtKB: F7C0E4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006515187   ⟸   XM_006515124
- Peptide Label: isoform X1
- UniProtKB: F7C0E4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006515188   ⟸   XM_006515125
- Peptide Label: isoform X2
- UniProtKB: F7C0E4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006515192   ⟸   XM_006515129
- Peptide Label: isoform X6
- UniProtKB: F6X2K7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006515193   ⟸   XM_006515130
- Peptide Label: isoform X7
- UniProtKB: F6X2K7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006515191   ⟸   XM_006515128
- Peptide Label: isoform X4
- UniProtKB: F6X2K7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006515197   ⟸   XM_006515134
- Peptide Label: isoform X8
- UniProtKB: Q3U1F1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006515196   ⟸   XM_006515133
- Peptide Label: isoform X8
- UniProtKB: Q3U1F1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006515195   ⟸   XM_006515132
- Peptide Label: isoform X8
- UniProtKB: Q3U1F1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006515199   ⟸   XM_006515136
- Peptide Label: isoform X11
- UniProtKB: Q3U1F1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242183   ⟸   XM_011243881
- Peptide Label: isoform X13
- UniProtKB: D3Z7I2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017170612   ⟸   XM_017315123
- Peptide Label: isoform X5
- UniProtKB: Q3U1F1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017170613   ⟸   XM_017315124
- Peptide Label: isoform X10
- UniProtKB: Q3U1F1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030102662   ⟸   XM_030246802
- Peptide Label: isoform X12
- UniProtKB: B2RW07 (UniProtKB/TrEMBL),   Q3U1F1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030102663   ⟸   XM_030246803
- Peptide Label: isoform X14
- UniProtKB: Q3U1F1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001360952   ⟸   NM_001374023
- Peptide Label: isoform 4
- UniProtKB: F6X2K7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001360951   ⟸   NM_001374022
- Peptide Label: isoform 3
- UniProtKB: F7C0E4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001360954   ⟸   NM_001374025
- Peptide Label: isoform 6
- UniProtKB: Q3U1F1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001360953   ⟸   NM_001374024
- Peptide Label: isoform 5
- UniProtKB: Q3U1F1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001360955   ⟸   NM_001374026
- Peptide Label: isoform 1
- UniProtKB: B2RW07 (UniProtKB/TrEMBL),   Q3U1F1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000118777   ⟸   ENSMUST00000125192
RefSeq Acc Id: ENSMUSP00000151570   ⟸   ENSMUST00000144586
RefSeq Acc Id: ENSMUSP00000088085   ⟸   ENSMUST00000090597
RefSeq Acc Id: ENSMUSP00000106448   ⟸   ENSMUST00000110824
RefSeq Acc Id: ENSMUSP00000122156   ⟸   ENSMUST00000146040
RefSeq Acc Id: ENSMUSP00000122982   ⟸   ENSMUST00000154742
RefSeq Acc Id: ENSMUSP00000076668   ⟸   ENSMUST00000077456
RefSeq Acc Id: ENSMUSP00000151520   ⟸   ENSMUST00000136644
RefSeq Acc Id: XP_036013402   ⟸   XM_036157509
- Peptide Label: isoform X9
- UniProtKB: F6X2K7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036013403   ⟸   XM_036157510
- Peptide Label: isoform X15
- UniProtKB: Q3TYJ2 (UniProtKB/TrEMBL)
Protein Domains
SCA7

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CZ05-F1-model_v2 AlphaFold Q9CZ05 1-146 view protein structure

Promoters
RGD ID:8678122
Promoter ID:EPDNEW_M17092
Type:initiation region
Name:Atxn7l1_2
Description:Mus musculus ataxin 7-like 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M17093  EPDNEW_M17094  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381233,147,763 - 33,147,823EPDNEW
RGD ID:8678124
Promoter ID:EPDNEW_M17093
Type:multiple initiation site
Name:Atxn7l1_1
Description:Mus musculus ataxin 7-like 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M17092  EPDNEW_M17094  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381233,315,405 - 33,315,465EPDNEW
RGD ID:8678126
Promoter ID:EPDNEW_M17094
Type:multiple initiation site
Name:Atxn7l1_3
Description:Mus musculus ataxin 7-like 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M17092  EPDNEW_M17093  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381233,345,283 - 33,345,343EPDNEW
RGD ID:6822751
Promoter ID:MM_KWN:11473
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Liver
Transcripts:ENSMUST00000073801,   OTTMUST00000082255
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361233,986,856 - 33,987,356 (+)MPROMDB
RGD ID:6822755
Promoter ID:MM_KWN:11474
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   Spleen
Transcripts:OTTMUST00000082257,   OTTMUST00000082259,   OTTMUST00000082260
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361233,998,331 - 33,999,282 (+)MPROMDB
RGD ID:6822754
Promoter ID:MM_KWN:11475
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung,   Spleen
Transcripts:OTTMUST00000082256,   OTTMUST00000082261
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361233,999,946 - 34,000,446 (+)MPROMDB
RGD ID:6822753
Promoter ID:MM_KWN:11477
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung
Transcripts:OTTMUST00000082258
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361234,030,206 - 34,030,706 (+)MPROMDB
RGD ID:6822756
Promoter ID:MM_KWN:11478
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000082262
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361234,051,531 - 34,052,657 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3584458 AgrOrtholog
Ensembl Genes ENSMUSG00000020564 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000077456.13 UniProtKB/Swiss-Prot
  ENSMUST00000090597 ENTREZGENE
  ENSMUST00000090597.11 UniProtKB/TrEMBL
  ENSMUST00000110824 ENTREZGENE
  ENSMUST00000110824.9 UniProtKB/Swiss-Prot
  ENSMUST00000125192 ENTREZGENE
  ENSMUST00000125192.9 UniProtKB/TrEMBL
  ENSMUST00000136644.8 UniProtKB/TrEMBL
  ENSMUST00000144586.2 UniProtKB/TrEMBL
  ENSMUST00000146040 ENTREZGENE
  ENSMUST00000146040.9 UniProtKB/TrEMBL
  ENSMUST00000154742 ENTREZGENE
  ENSMUST00000154742.2 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.670 UniProtKB/TrEMBL
InterPro SCA7_dom UniProtKB/TrEMBL
KEGG Report mmu:380753 UniProtKB/Swiss-Prot
MGD MGI:3584458 ENTREZGENE
NCBI Gene 380753 ENTREZGENE
PANTHER ATAXIN 7 RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATAXIN-7-LIKE PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SCA7 UniProtKB/TrEMBL
PhenoGen Atxn7l1 PhenoGen
PROSITE SCA7 UniProtKB/TrEMBL
UniProt A0A1W2P743_MOUSE UniProtKB/TrEMBL
  A0A1W2P7C9_MOUSE UniProtKB/TrEMBL
  AT7L1_MOUSE UniProtKB/Swiss-Prot
  B2RW07 ENTREZGENE, UniProtKB/TrEMBL
  D3Z7I2 ENTREZGENE, UniProtKB/TrEMBL
  F6X2K7 ENTREZGENE, UniProtKB/TrEMBL
  F7C0E4 ENTREZGENE, UniProtKB/TrEMBL
  Q3TYJ2 ENTREZGENE, UniProtKB/TrEMBL
  Q3U1F1 ENTREZGENE, UniProtKB/TrEMBL
  Q8VD60 ENTREZGENE
  Q9CZ05 ENTREZGENE
UniProt Secondary Q8VD60 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-28 Atxn7l1  ataxin 7-like 1  Atxn7l4  ataxin 7-like 4  Data merged from RGD:1619119 737654 PROVISIONAL