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Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
 Gene Annotator (Annotation Distribution) unavailable |
 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
Gene Annotator (Annotation Distribution) |
Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
 Gviewer (Genome Viewer) unavailable |
 Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable |
InterViewer (Protein-Protein Interactions) |
GViewer (Genome Viewer) |
Variant Visualizer (Damaging Variants) |
 Gene Annotator (Annotation Comparison) unavailable |
 OLGA (Gene List Generator) unavailable |
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Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
 MOET (Multi-Ontology Enrichement) unavailable |
 GOLF (Gene-Ortholog Location Finder) unavailable |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Imported Annotations - CTD | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| esophagus adenocarcinoma | ISO | RGD:1320323 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:24121790 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene-Chemical Interaction AnnotationsGene Ontology AnnotationsPhenotype AnnotationsDisease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology Annotations
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Phenotype Annotations
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References - curated| 1. | Liu L, etal., Brain Res Bull. 2010 May 31;82(3-4):228-33. Epub 2010 Apr 24. |
| 2. | RGD automated import pipeline |
| 3. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 4. | RGD automated import pipeline for gene-chemical interactions |
References - uncurated| PubMed | 8889548 10922068 11544199 12477932 12520002 14610273 14621295 15489334 15782199 16944949 17284572 17360587 17386266 18164202 18587048 18653778 18664580 18758446 19052232 19305497 19734865 19843540 19864431 20059953 20068142 20299527 20631169 20691905 20819186 20837164 20925120 21220102 21267068 21677750 21873635 21986493 22179316 22457330 22589249 22592058 22770221 23109424 23209294 23223304 23295457 23376645 23447692 23517912 23531613 23832089 23993098 24645666 24760838 24801387 24870234 24889041 24982181 25164809 25213336 25277455 25737949 26894960 26970016 27060162 27404284 27587263 27606668 27869139 28069808 28076781 28235073 28244951 28334166 28636954 29217834 29269871 30521840 30611118 |
Comparative Map Data| Crtc1 (Mus musculus - house mouse) |
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| CRTC1 (Homo sapiens - human) |
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| Crtc1 (Rattus norvegicus - Norway rat) |
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| Crtc1 (Chinchilla lanigera - long-tailed chinchilla) |
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| CRTC1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| CRTC1 (Canis lupus familiaris - dog) |
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| Crtc1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| CRTC1 (Sus scrofa - pig) |
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| CRTC1 (Chlorocebus sabaeus - African green monkey) |
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| Crtc1 (Heterocephalus glaber - naked mole-rat) |
No map positions available. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Position Markers| AI413414 |
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| RH125134 |
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| UniSTS:235913 |
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| AI071469 |
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QTLs in Region (GRCm38)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Nucleotide Sequences| RefSeq Transcripts | NM_001004062 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006509699 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006509700 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006509704 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_011242309 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_011242310 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_011242311 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_011242312 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_011242313 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_011242314 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_030243653 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AC158553 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AK129173 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AK208063 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC056137 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC068139 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC080308 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH466569 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | ENSMUST00000076615 ⟹ ENSMUSP00000075916 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| RefSeq Acc Id: | ENSMUST00000125273 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| RefSeq Acc Id: | ENSMUST00000125613 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| RefSeq Acc Id: | ENSMUST00000142769 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| RefSeq Acc Id: | ENSMUST00000153632 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| RefSeq Acc Id: | NM_001004062 ⟹ NP_001004062 | ||||||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||||||
| Position: |
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| Sequence: |
GGAGGCGGCGAGAAGATGGCGACTTCGAACAATCCGCGGAAATTTAGCGAGAAGATCGCACTGChide sequence |
| RefSeq Acc Id: | XM_006509699 ⟹ XP_006509762 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GGCCGTGGGCCCGGCCGGCGCCTGCGCGGTGGCTCCCGAGAGTGGGGGGGGCCAGGAGGTGGAGhide sequence |
| RefSeq Acc Id: | XM_006509700 ⟹ XP_006509763 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CGCGGTGGCTCCCGAGAGTGGGGGGGGCCAGGAGGTGGAGGAGGAGTAGGAGTAGGAGGAGGCGhide sequence |
| RefSeq Acc Id: | XM_006509704 ⟹ XP_006509767 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GCGCCGGCGCCACGCTCTGGGCCGTGCTTGCGCCTGCGCGTTCTCTCCGGCCGTGGGCCCGGCChide sequence |
| RefSeq Acc Id: | XM_011242309 ⟹ XP_011240611 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GCGCGGTGGCTCCCGAGAGTGGGGGGGGCCAGGAGGTGGAGGAGGAGTAGGAGTAGGAGGAGGChide sequence |
| RefSeq Acc Id: | XM_011242310 ⟹ XP_011240612 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GCGCGGTGGCTCCCGAGAGTGGGGGGGGCCAGGAGGTGGAGGAGGAGTAGGAGTAGGAGGAGGChide sequence |
| RefSeq Acc Id: | XM_011242311 ⟹ XP_011240613 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GGCCGGCGCCTGCGCGGTGGCTCCCGAGAGTGGGGGGGGCCAGGAGGTGGAGGAGGAGTAGGAGhide sequence |
| RefSeq Acc Id: | XM_011242312 ⟹ XP_011240614 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GGTGGCTCCCGAGAGTGGGGGGGGCCAGGAGGTGGAGGAGGAGTAGGAGTAGGAGGAGGCGGCGhide sequence |
| RefSeq Acc Id: | XM_011242313 ⟹ XP_011240615 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GGAGGAGACGGCGGCCTTCGAGGAGGTCATGAAGGACCTGAGCCTGACGCGGGCCGCGCGGGAChide sequence |
| RefSeq Acc Id: | XM_011242314 ⟹ XP_011240616 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GCCTGCGCGGTGGCTCCCGAGAGTGGGGGGGGCCAGGAGGTGGAGGAGGAGTAGGAGTAGGAGGhide sequence |
| RefSeq Acc Id: | XM_030243653 ⟹ XP_030099513 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GGGGGGCCAGGAGGTGGAGGAGGAGTAGGAGTAGGAGGAGGCGGCGAGAAGATGGCGACTTCGAhide sequence |
Protein Sequences| Protein RefSeqs | NP_001004062 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006509762 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006509763 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006509767 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_011240611 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_011240612 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_011240613 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_011240614 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_011240615 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_011240616 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_030099513 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAH80308 | (Get FASTA) | NCBI Sequence Viewer |
| BAC97983 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL28816 | (Get FASTA) | NCBI Sequence Viewer | |
| Q68ED7 | (Get FASTA) | NCBI Sequence Viewer |
| RefSeq Acc Id: | NP_001004062 ⟸ NM_001004062 |
| - UniProtKB: | Q68ED7 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MATSNNPRKFSEKIALHNQKQAEETAAFEEVMKDLSLTRAARLQLQKSQYLQLGPSRGQYYGGShide sequence |
| RefSeq Acc Id: | XP_006509762 ⟸ XM_006509699 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MATSNNPRKFSEKIALHNQKQAEETAAFEEVMKDLSLTRAARLQLQKSQYLQLGPSRGQYYGGShide sequence |
| RefSeq Acc Id: | XP_006509763 ⟸ XM_006509700 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MATSNNPRKFSEKIALHNQKQAEETAAFEEVMKDLSLTRAARTPFQSSGLDTSRTTRHHGLVDRhide sequence |
| RefSeq Acc Id: | XP_006509767 ⟸ XM_006509704 |
| - Peptide Label: | isoform X9 |
| - Sequence: |
MEDTGAETDKTLSKQSWDSKKAGSRPKSCEVPGINIFPSADQENTTALIPATHNTGGSLPDLTNhide sequence |
| RefSeq Acc Id: | XP_011240613 ⟸ XM_011242311 |
| - Peptide Label: | isoform X5 |
| - Sequence: |
MATSNNPRKFSEKIALHNQKQAEETAAFEEVMKDLSLTRAARLQLQKSQYLQLGPSRGQYYGGShide sequence |
| RefSeq Acc Id: | XP_011240612 ⟸ XM_011242310 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MATSNNPRKFSEKIALHNQKQAEETAAFEEVMKDLSLTRAARTPFQSSGLDTSRTTRHHGLVDRhide sequence |
| RefSeq Acc Id: | XP_011240611 ⟸ XM_011242309 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MATSNNPRKFSEKIALHNQKQAEETAAFEEVMKDLSLTRAARLQLQKSQYLQLGPSRGQYYGGShide sequence |
| RefSeq Acc Id: | XP_011240614 ⟸ XM_011242312 |
| - Peptide Label: | isoform X6 |
| - Sequence: |
MGDRLTAAPMAPCTSRLLRTPAGGVLLLTVPGMEDTGAETDKTLSKQSWDSKKAGSRPKSCEVPhide sequence |
| RefSeq Acc Id: | XP_011240615 ⟸ XM_011242313 |
| - Peptide Label: | isoform X7 |
| - Sequence: |
MTPSQAESFTGGSQDAHQKRVLLLTVPGMEDTGAETDKTLSKQSWDSKKAGSRPKSCEVPGINChide sequence |
| RefSeq Acc Id: | XP_011240616 ⟸ XM_011242314 |
| - Peptide Label: | isoform X10 |
| - Sequence: |
MATSNNPRKFSEKIALHNQKQAEETAAFEEVMKDLSLTRAARLQLQKSQYLQLGPSRGQYYGGShide sequence |
| RefSeq Acc Id: | XP_030099513 ⟸ XM_030243653 |
| - Peptide Label: | isoform X8 |
| RefSeq Acc Id: | ENSMUSP00000075916 ⟸ ENSMUST00000076615 |
Promoters| RGD ID: | 8667307 | |||||||||
| Promoter ID: | EPDNEW_M11684 | |||||||||
| Type: | multiple initiation site | |||||||||
| Name: | Crtc1_1 | |||||||||
| Description: | Mus musculus CREB regulated transcription coactivator 1 , mRNA. | |||||||||
| SO ACC ID: | SO:0000170 | |||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | |||||||||
| Experiment Methods: | Single-end sequencing. | |||||||||
| Position: |
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| RGD ID: | 6842975 | |||||||||
| Promoter ID: | MM_KWN:54701 | |||||||||
| Type: | Non-CpG | |||||||||
| SO ACC ID: | SO:0000170 | |||||||||
| Source: | MPROMDB | |||||||||
| Tissues & Cell Lines: | Brain | |||||||||
| Transcripts: | OTTMUST00000052983 | |||||||||
| Position: |
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| RGD ID: | 6842976 | |||||||||
| Promoter ID: | MM_KWN:54703 | |||||||||
| Type: | CpG-Island | |||||||||
| SO ACC ID: | SO:0000170 | |||||||||
| Source: | MPROMDB | |||||||||
| Tissues & Cell Lines: | 3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen | |||||||||
| Transcripts: | OTTMUST00000052982, OTTMUST00000052985, OTTMUST00000052986 | |||||||||
| Position: |
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External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | MGI:2142523 | AgrOrtholog |
| Ensembl Genes | ENSMUSG00000003575 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Protein | ENSMUSP00000075916 | ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Transcript | ENSMUST00000076615 | ENTREZGENE, UniProtKB/Swiss-Prot |
| InterPro | TORC | UniProtKB/Swiss-Prot |
| TORC_C | UniProtKB/Swiss-Prot | |
| TORC_M | UniProtKB/Swiss-Prot | |
| TORC_N | UniProtKB/Swiss-Prot | |
| KEGG Report | mmu:382056 | UniProtKB/Swiss-Prot |
| MGD | MGI:2142523 | ENTREZGENE |
| NCBI Gene | 382056 | ENTREZGENE |
| PANTHER | PTHR13589 | UniProtKB/Swiss-Prot |
| Pfam | TORC_C | UniProtKB/Swiss-Prot |
| TORC_M | UniProtKB/Swiss-Prot | |
| TORC_N | UniProtKB/Swiss-Prot | |
| PhenoGen | Crtc1 | PhenoGen |
| UniGene | Mm.227767 | ENTREZGENE |
| UniProt | CRTC1_MOUSE | UniProtKB/Swiss-Prot, ENTREZGENE |
| UniProt Secondary | Q6ZQ85 | UniProtKB/Swiss-Prot |
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| More on Crtc1 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: mm9 mm10 |
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MGI Report |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1614777 |
| Created: | 2007-04-30 |
| Species: | Mus musculus |
| Last Modified: | 2020-01-14 |
| Status: | ACTIVE |
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.
