Nat8b-ps (N-acetyltransferase 8B, pseudogene) - Rat Genome Database

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Gene: Nat8b-ps (N-acetyltransferase 8B, pseudogene) Mus musculus
Analyze
Symbol: Nat8b-ps
Name: N-acetyltransferase 8B, pseudogene
RGD ID: 1614716
MGI Page MGI
Description: Predicted to enable N-acetyltransferase activity. Orthologous to human NAT8 (N-acetyltransferase 8 (putative)) and NAT8B (N-acetyltransferase 8B (putative, gene/pseudogene)); INTERACTS WITH benzo[b]fluoranthene; GW 4064; tetraphene.
Type: pseudo
RefSeq Status: INFERRED
Also known as: EG434057; Nat; Nat8b
RGD Orthologs
Human
Rat
Bonobo
Alliance Genes
More Info more info ...
Related Functional Gene: Nat8f1  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39685,909,539 - 85,910,364 (-)NCBIGRCm39mm39
GRCm39 Ensembl685,909,663 - 85,910,361 (-)Ensembl
GRCm38685,932,557 - 85,933,382 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl685,932,681 - 85,933,379 (-)EnsemblGRCm38mm10GRCm38
MGSCv37685,882,551 - 85,883,376 (-)NCBIGRCm37mm9NCBIm37
MGSCv36685,898,191 - 85,898,983 (-)NCBImm8
Celera687,866,917 - 87,867,737 (-)NCBICelera
Cytogenetic Map6C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21873635  


Genomics

Comparative Map Data
Nat8b-ps
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39685,909,539 - 85,910,364 (-)NCBIGRCm39mm39
GRCm39 Ensembl685,909,663 - 85,910,361 (-)Ensembl
GRCm38685,932,557 - 85,933,382 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl685,932,681 - 85,933,379 (-)EnsemblGRCm38mm10GRCm38
MGSCv37685,882,551 - 85,883,376 (-)NCBIGRCm37mm9NCBIm37
MGSCv36685,898,191 - 85,898,983 (-)NCBImm8
Celera687,866,917 - 87,867,737 (-)NCBICelera
Cytogenetic Map6C3NCBI
NAT8B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl273,700,576 - 73,701,340 (-)EnsemblGRCh38hg38GRCh38
GRCh38273,700,509 - 73,701,340 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37273,927,636 - 73,928,467 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36273,781,144 - 73,781,975 (-)NCBINCBI36hg18NCBI36
Celera273,778,479 - 73,779,310 (-)NCBI
Cytogenetic Map2p13.1NCBI
HuRef273,662,585 - 73,663,416 (-)NCBIHuRef
CHM1_1273,858,379 - 73,859,210 (-)NCBICHM1_1
Nat8b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24118,359,445 - 118,364,351 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl4118,359,443 - 118,363,563 (-)Ensembl
Rnor_6.04117,606,022 - 117,607,366 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4117,606,022 - 117,607,428 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl4117,789,006 - 117,790,350 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04182,361,531 - 182,362,875 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44120,082,555 - 120,083,899 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14120,327,035 - 120,328,380 (-)NCBI
Celera4107,332,809 - 107,334,153 (-)NCBICelera
Cytogenetic Map4q34NCBI
LOC100971190
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A75,297,416 - 75,298,963 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A75,297,531 - 75,298,213 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A73,761,907 - 73,763,964 (-)NCBIMhudiblu_PPA_v0panPan3


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7132262186275719Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:103
Count of miRNA genes:97
Interacting mature miRNAs:102
Transcripts:ENSMUST00000162660
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_020698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC158679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000162660
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl685,909,663 - 85,910,361 (-)Ensembl
GRCm38.p6 Ensembl685,932,681 - 85,933,379 (-)Ensembl
Protein Sequences
GenBank Protein E0CYC6 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
Protein Domains
N-acetyltransferase

Promoters
RGD ID:6839681
Promoter ID:MM_KWN:46709
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver
Transcripts:XM_485799_NAT8B
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36685,883,416 - 85,884,207 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3644831 AgrOrtholog
Ensembl Genes ENSMUSG00000089634 Ensembl, ENTREZGENE
InterPro Acyl_CoA_acyltransferase UniProtKB/Swiss-Prot
  GNAT_dom UniProtKB/Swiss-Prot
MGD MGI:3644831 ENTREZGENE
NCBI Gene 434057 ENTREZGENE
Pfam Acetyltransf_1 UniProtKB/Swiss-Prot
PhenoGen Nat8b-ps PhenoGen
PROSITE GNAT UniProtKB/Swiss-Prot
Superfamily-SCOP SSF55729 UniProtKB/Swiss-Prot
UniProt E0CYC6 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-10-06 Nat8b-ps  N-acetyltransferase 8B, pseudogene  Nat8b  N-acetyltransferase 8B  Symbol and/or name change 5135510 APPROVED