Gm5577 (predicted gene 5577) - Rat Genome Database
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Gene: Gm5577 (predicted gene 5577) Mus musculus
Analyze
Symbol: Gm5577
Name: predicted gene 5577
RGD ID: 1614715
MGI Page MGI
Description: Is expressed in nervous system and retina.
Type: ncrna
RefSeq Status: VALIDATED
Also known as: EG434064
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39687,958,665 - 87,961,162 (+)NCBIGRCm39mm39
GRCm39 Ensembl687,957,865 - 87,982,453 (+)Ensembl
GRCm38687,981,683 - 87,984,180 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl687,980,883 - 88,005,471 (+)EnsemblGRCm38mm10GRCm38
MGSCv37687,931,677 - 87,934,174 (+)NCBIGRCm37mm9NCBIm37
MGSCv36687,947,204 - 87,949,836 (+)NCBImm8
Celera689,918,537 - 89,921,034 (+)NCBICelera
Cytogenetic Map6D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:438
Count of miRNA genes:365
Interacting mature miRNAs:398
Transcripts:ENSMUST00000134600, ENSMUST00000143871, ENSMUST00000153372
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000134600
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,980,883 - 87,984,180 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143871
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,981,683 - 87,984,172 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153372
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,981,683 - 88,005,471 (+)Ensembl
RefSeq Acc Id: NR_026990
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,958,665 - 87,961,162 (+)NCBI
GRCm38687,981,683 - 87,984,180 (+)ENTREZGENE
MGSCv37687,931,677 - 87,934,174 (+)RGD
Celera689,918,537 - 89,921,034 (+)RGD
cM Map6 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein BAB31987 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences

Promoters
RGD ID:6839891
Promoter ID:MM_KWN:46799
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   Brain,   ES_Cell,   Lung,   MEF_B4
Transcripts:NR_026990,   OTTMUST00000060576
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36687,931,401 - 87,931,901 (+)MPROMDB
RGD ID:6890356
Promoter ID:EPDNEW_M8629
Type:initiation region
Name:Gm5577_2
Description:Mus musculus predicted gene 5577 , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8631  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38687,980,843 - 87,980,903EPDNEW
RGD ID:15093117
Promoter ID:EPDNEWNC_M1024
Type:initiation region
Name:Gm5577_2
Description:predicted gene 5577 [Source:MGI Symbol;Acc:MGI:3648213]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38687,980,843 - 87,980,903EPDNEWNC
RGD ID:6890360
Promoter ID:EPDNEW_M8631
Type:initiation region
Name:Gm5577_1
Description:Mus musculus predicted gene 5577 , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8629  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38687,981,712 - 87,981,772EPDNEW
RGD ID:15093116
Promoter ID:EPDNEWNC_M1025
Type:multiple initiation site
Name:Gm5577_1
Description:predicted gene 5577 [Source:MGI Symbol;Acc:MGI:3648213]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38687,981,712 - 87,981,772EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000084950 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000143871 ENTREZGENE
MGD MGI:3648213 ENTREZGENE
NCBI Gene 434064 ENTREZGENE
PhenoGen Gm5577 PhenoGen
RNAcentral URS000075A059 RNACentral
UniProt Q9CRN2_MOUSE UniProtKB/TrEMBL