Gm1965 (predicted gene 1965) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Gm1965 (predicted gene 1965) Mus musculus
Analyze
Symbol: Gm1965
Name: predicted gene 1965
RGD ID: 1614714
MGI Page MGI
Description:
Type: ncrna
RefSeq Status: VALIDATED
Also known as: AU018164; AU021089; AU023851; C86079; expressed sequence AU023851; hypothetical protein LOC434065; uncharacterized protein LOC434065
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39689,117,976 - 89,124,352 (+)NCBIGRCm39mm39
GRCm39 Ensembl689,117,976 - 89,124,370 (+)Ensembl
GRCm38689,140,994 - 89,147,370 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl689,140,994 - 89,147,388 (+)EnsemblGRCm38mm10GRCm38
MGSCv37689,090,999 - 89,096,010 (+)NCBIGRCm37mm9NCBIm37
MGSCv36689,106,646 - 89,111,657 (+)NCBImm8
Celera691,077,580 - 91,082,591 (+)NCBICelera
Cytogenetic Map6D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073  


Genomics

Position Markers
RH127255  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38689,146,682 - 89,146,889UniSTSGRCm38
GRCm38X118,548,104 - 118,548,311UniSTSGRCm38
MGSCv37689,096,676 - 89,096,883UniSTSGRCm37
MGSCv37X115,661,713 - 115,661,920UniSTSGRCm37
Celera691,083,253 - 91,083,460UniSTS
CeleraX105,220,987 - 105,221,194UniSTS
Cytogenetic Map6D1UniSTS
Whitehead/MRC_RH6913.98UniSTS
RH136443  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38689,146,593 - 89,146,800UniSTSGRCm38
GRCm38X118,548,021 - 118,548,222UniSTSGRCm38
MGSCv37X115,661,630 - 115,661,831UniSTSGRCm37
MGSCv37689,096,587 - 89,096,794UniSTSGRCm37
Celera691,083,168 - 91,083,371UniSTS
CeleraX105,220,904 - 105,221,105UniSTS
Cytogenetic Map6D1UniSTS
AU023851  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38689,146,535 - 89,146,673UniSTSGRCm38
GRCm38X118,547,963 - 118,548,095UniSTSGRCm38
MGSCv37689,096,529 - 89,096,667UniSTSGRCm37
MGSCv37X115,661,572 - 115,661,704UniSTSGRCm37
Celera691,083,110 - 91,083,244UniSTS
CeleraX105,220,846 - 105,220,978UniSTS
Cytogenetic Map6D1UniSTS
Whitehead/MRC_RH6912.98UniSTS
AU018164  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38689,147,052 - 89,147,150UniSTSGRCm38
MGSCv37689,097,046 - 89,097,144UniSTSGRCm37
Celera691,083,623 - 91,083,722UniSTS
Cytogenetic Map6D1UniSTS
Whitehead/MRC_RH6913.68UniSTS
UniSTS:235489  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38689,147,114 - 89,147,355UniSTSGRCm38
MGSCv37689,097,108 - 89,097,349UniSTSGRCm37
Celera691,083,686 - 91,083,927UniSTS
Cytogenetic Map6D1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1578
Count of miRNA genes:425
Interacting mature miRNAs:483
Transcripts:ENSMUST00000101176, ENSMUST00000160361, ENSMUST00000161362, ENSMUST00000162900
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000160361
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl689,141,005 - 89,147,388 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161362
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl689,141,005 - 89,147,353 (+)Ensembl
RefSeq Acc Id: ENSMUST00000162900
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl689,141,005 - 89,146,674 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203378
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl689,140,994 - 89,147,370 (+)Ensembl
RefSeq Acc Id: NR_121593
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39689,117,976 - 89,124,352 (+)NCBI
GRCm38689,140,994 - 89,147,370 (+)NCBI
Celera691,077,569 - 91,083,942 (+)NCBI
Sequence:
RefSeq Acc Id: NR_121594
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39689,117,976 - 89,124,352 (+)NCBI
GRCm38689,140,994 - 89,147,370 (+)NCBI
Celera691,077,569 - 91,083,942 (+)NCBI
Sequence:
RefSeq Acc Id: NR_121595
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39689,117,976 - 89,124,352 (+)NCBI
GRCm38689,140,994 - 89,147,370 (+)NCBI
Celera691,077,569 - 91,083,942 (+)NCBI
Sequence:
RefSeq Acc Id: NR_121596
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39689,117,976 - 89,124,352 (+)NCBI
GRCm38689,140,994 - 89,147,370 (+)NCBI
Celera691,077,569 - 91,083,942 (+)NCBI
Sequence:
Reference Sequences

Promoters
RGD ID:6890394
Promoter ID:EPDNEW_M8648
Type:multiple initiation site
Name:Gm1965_1
Description:Mus musculus predicted gene 1965 , transcript variant 4, longnon-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38689,141,005 - 89,141,065EPDNEW
RGD ID:15093113
Promoter ID:EPDNEWNC_M1030
Type:single initiation site
Name:Gm1965_1
Description:predicted gene 1965 [Source:MGI Symbol;Acc:MGI:3584270]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38689,141,005 - 89,141,065EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000090254 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000160361 ENTREZGENE
  ENSMUST00000161362 ENTREZGENE
  ENSMUST00000203378 ENTREZGENE
MGD MGI:3584270 ENTREZGENE
NCBI Gene 434065 ENTREZGENE
PhenoGen Gm1965 PhenoGen
RNAcentral URS000075B9DA RNACentral
  URS000075BA52 RNACentral
  URS000075EBF8 RNACentral
  URS000075EF12 RNACentral
UniProt Q3UTD5_MOUSE UniProtKB/TrEMBL
  Q3UWV0_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Gm1965  predicted gene 1965  AU023851  expressed sequence AU023851  Data Merged 737654 PROVISIONAL