Ubl5b (ubiquitin-like 5B) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Ubl5b (ubiquitin-like 5B) Mus musculus
Analyze
No known orthologs.
Symbol: Ubl5b
Name: ubiquitin-like 5B
RGD ID: 1614704
MGI Page MGI
Description: Predicted to enable protein tag activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be active in cytoplasm and nucleus.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: EG435336; Gm16381; ubiquitin-like 5-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391287,690,888 - 87,695,753 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1287,690,888 - 87,695,753 (-)EnsemblGRCm39 Ensembl
GRCm381287,644,118 - 87,648,983 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1287,644,118 - 87,644,620 (-)EnsemblGRCm38mm10GRCm38
MGSCv371288,985,068 - 88,985,570 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361288,984,681 - 88,985,696 (-)NCBIMGSCv36mm8
Celera1289,661,970 - 89,662,417 (-)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1241.88NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21873635  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:126
Count of miRNA genes:122
Interacting mature miRNAs:123
Transcripts:ENSMUST00000180181
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
27226728Tibl20_mtibia length 20, 16 week (mouse)125914678693866774Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126064678692666774Mouse
10043948Pbft6_mpercent body fat 6 (mouse)Not determined126120542795205427Mouse
1301476Pbwg12_mpostnatal body weight growth 12 (mouse)Not determined126204016496040364Mouse
27226797Scvln19_msacral vertebrae length 2, 16 week (mouse)126214678699466259Mouse
10043895Bw20_mbody weight QTL 20 (mouse)Not determined126230825296308252Mouse
1301046Par3_mpulmonary adenoma resistance 3 (mouse)Not determined126395670897956883Mouse
1301337Cdcs8_mcytokine deficiency colitis susceptibility 8 (mouse)Not determined126468908398689229Mouse
1300633Cdcs7_mcytokine deficiency colitis susceptibility 7 (mouse)Not determined126468908398689229Mouse
14746976Manh73_mmandible shape 73 (mouse)126585713199857131Mouse
27226771Tibl14_mtibia length 14, 10 week (mouse)126834677498766259Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72112877106112877Mouse
1301926Adip6_madiposity 6 (mouse)Not determined1273887422107887526Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273887422107887526Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277512220111512220Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80956708113383533Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80956708113383533Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80956708113383533Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280956708113383533Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1280989143114989143Mouse
25823169Hrsq8_mhost response to SARS QTL 8, log titer (mouse)1281696245108495368Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282666396116666396Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283532075117532224Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283532075117532224Mouse
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285961579119961683Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286396075114831653Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001166062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC126554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000220528   ⟹   ENSMUSP00000152141
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1287,690,888 - 87,695,753 (-)Ensembl
GRCm38.p6 Ensembl1287,644,118 - 87,644,620 (-)Ensembl
RefSeq Acc Id: NM_001166062   ⟹   NP_001159534
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391287,690,888 - 87,695,753 (-)NCBI
GRCm381287,644,118 - 87,648,983 (-)ENTREZGENE
MGSCv371288,985,068 - 88,985,570 (-)RGD
Celera1289,661,970 - 89,662,417 (-)ENTREZGENE
cM Map12 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001159534 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000152093.2
  ENSMUSP00000152141
  ENSMUSP00000152141.2
Reference Protein Sequences
RefSeq Acc Id: NP_001159534   ⟸   NM_001166062
- UniProtKB: A0A1Y7VKT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000152141   ⟸   ENSMUST00000220528
Protein Domains
Ubiquitin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A1Y7VKT9-F1-model_v2 AlphaFold A0A1Y7VKT9 1-73 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3648256 AgrOrtholog
Ensembl Genes ENSMUSG00000113489 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSG00000113951 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000220528 ENTREZGENE
  ENSMUST00000220528.3 UniProtKB/TrEMBL
  ENSMUST00000223236.3 UniProtKB/TrEMBL
InterPro Hub1/Ubl5 UniProtKB/TrEMBL
  Ubiquitin-rel_dom UniProtKB/TrEMBL
  Ubiquitin_dom UniProtKB/TrEMBL
KEGG Report mmu:100038992 UniProtKB/TrEMBL
  mmu:100042786 UniProtKB/TrEMBL
MGD MGI:3648256 ENTREZGENE
NCBI Gene 100042786 ENTREZGENE
PANTHER PTHR13042 UniProtKB/TrEMBL
  UBIQUITIN-LIKE PROTEIN 5 UniProtKB/TrEMBL
Pfam ubiquitin UniProtKB/TrEMBL
PhenoGen Ubl5b PhenoGen
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
UniProt A0A1Y7VKT9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-09-28 Ubl5b  ubiquitin-like 5B  Gm16381  predicted gene 16381  Symbol and/or name updated 27372883 PROVISIONAL