Rpl22-ps1 (ribosomal protein L22, pseudogene 1) - Rat Genome Database

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Gene: Rpl22-ps1 (ribosomal protein L22, pseudogene 1) Mus musculus
Analyze
Symbol: Rpl22-ps1
Name: ribosomal protein L22, pseudogene 1
RGD ID: 1614626
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG627737; Gm6784
Related Functional Gene: Rpl22  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,904,812 - 7,905,256 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX7,904,850 - 7,905,235 (-)EnsemblGRCm39 Ensembl
GRCm38X8,038,573 - 8,039,017 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX8,038,611 - 8,038,996 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X7,615,699 - 7,616,143 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X7,195,533 - 7,195,977 (-)NCBIMGSCv36mm8
CeleraX3,430,377 - 3,430,821 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.63NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in Rpl22-ps1
18 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:57
Count of miRNA genes:56
Interacting mature miRNAs:56
Transcripts:ENSMUST00000118652
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302195Pbwg10_mpostnatal body weight growth 10 (mouse)Not determinedX126202173Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000118652
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,904,850 - 7,905,235 (-)Ensembl
GRCm38.p6 EnsemblX8,038,611 - 8,038,996 (-)Ensembl
Protein Sequences
GenBank Protein EDL33941 (Get FASTA)   NCBI Sequence Viewer  


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000080877 Ensembl, ENTREZGENE
MGD MGI:3644276 ENTREZGENE
NCBI Gene 627737 ENTREZGENE
PhenoGen Rpl22-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Rpl22-ps1  ribosomal protein L22, pseudogene 1  Gm6784  predicted gene 6784  Symbol and/or name change 5135510 APPROVED