Rpl5-ps1 (ribosomal protein L5, pseudogene 1) - Rat Genome Database

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Gene: Rpl5-ps1 (ribosomal protein L5, pseudogene 1) Mus musculus
Analyze
Symbol: Rpl5-ps1
Name: ribosomal protein L5, pseudogene 1
RGD ID: 1614594
MGI Page MGI
Description: INTERACTS WITH 2,3',4,4',5-Pentachlorobiphenyl
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG665407; Gm7625
Related Functional Gene: Rpl5  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39114,935,242 - 14,936,243 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl114,935,296 - 14,936,189 (+)EnsemblGRCm39 Ensembl
GRCm38114,865,018 - 14,866,019 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl114,865,072 - 14,865,965 (+)EnsemblGRCm38mm10GRCm38
MGSCv37114,855,099 - 14,856,100 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36114,850,206 - 14,851,264 (+)NCBIMGSCv36mm8
Celera114,814,867 - 14,815,868 (+)NCBICelera
Cytogenetic Map1A3NCBI
cM Map14.5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14610273  


Genomics

Variants

.
Variants in Rpl5-ps1
40 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:42
Count of miRNA genes:42
Interacting mature miRNAs:42
Transcripts:ENSMUST00000121367
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412226Alpq4_malcohol preference QTL 4 (mouse)Not determined1122976684Mouse
1301891Alcp25_malcohol preference locus 25 (mouse)Not determined1125203185Mouse
1300834Cia20_mcollagen induced arthritis 20 (mouse)Not determined1125203185Mouse
1301482Morph1_mmorphine antinociception 1 (mouse)Not determined1130367747Mouse
1301275Sle10_msystematic lupus erythematosus susceptibility 10 (mouse)Not determined1288219436882352Mouse
1301370Adip1_madiposity 1 (mouse)Not determined1288219436882352Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
15092044Wtgrme1_mweek ten growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092046Wngrme1_mweek nine growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092048Wsigrme1_mweek six growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092050Wsegrme1_mweek seven growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092051Wegrme1_mweek eight growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092055Lgrme1_mlate growth rate, maternal effect 1 (mouse)1328014237782236Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301471Obq2_mobesity QTL 2 (mouse)Not determined1394162037941887Mouse
10043970Obq23_mobesity QTL 23 (mouse)Not determined1501266539012665Mouse
1301011Cplaq4_mcircadian period of locomotor activity 4 (mouse)Not determined1967344243673601Mouse
14700685Civq2_mcerebral infarct volume QTL 2 (mouse)11134048245340482Mouse
38501065Nociq4_mnociceptive sensitivity QTL 4 (mouse)11202506915142285Mouse
4141646Fecq3_mfecundity QTL 3 (mouse)Not determined11291692026517685Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_012461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000121367
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,935,296 - 14,936,189 (+)Ensembl
GRCm38.p6 Ensembl114,865,072 - 14,865,965 (+)Ensembl
Promoters
RGD ID:6818323
Promoter ID:MM_KWN:164
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:OTTMUST00000050809,   XM_001473488_GM7625
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36114,855,196 - 14,855,696 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000082193 Ensembl, ENTREZGENE
MGD MGI:3647110 ENTREZGENE
NCBI Gene 665407 ENTREZGENE
PhenoGen Rpl5-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Rpl5-ps1  ribosomal protein L5, pseudogene 1  Gm7625  predicted gene 7625  Symbol and/or name change 5135510 APPROVED