Rps12-ps12 (ribosomal protein S12, pseudogene 12) - Rat Genome Database

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Gene: Rps12-ps12 (ribosomal protein S12, pseudogene 12) Mus musculus
Analyze
Symbol: Rps12-ps12
Name: ribosomal protein S12, pseudogene 12
RGD ID: 1614569
MGI Page MGI
Description:
Type: protein-coding (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S12-like; EG665463; Gm7643; predicted pseudogene 7643
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X123,509,048 - 123,509,520 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX123,509,061 - 123,509,459 (-)EnsemblGRCm39 Ensembl
GRCm38X124,599,351 - 124,599,777 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX124,599,364 - 124,599,762 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X121,712,973 - 121,713,371 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X120,716,260 - 120,716,793 (-)NCBIMGSCv36mm8
Cytogenetic MapXE3NCBI
cM MapX49.81NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:29
Count of miRNA genes:29
Interacting mature miRNAs:29
Transcripts:ENSMUST00000179020
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX120993165160213038Mouse
25314309Syncl5_msynaptonemal complex length 5 (mouse)X121909697152582996Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_036162170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CR974480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000179020
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX123,509,061 - 123,509,459 (-)Ensembl
GRCm38.p6 EnsemblX124,599,364 - 124,599,762 (-)Ensembl
RefSeq Acc Id: XM_036162170   ⟹   XP_036018063
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X123,509,048 - 123,509,520 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_036018063 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_036018063   ⟸   XM_036162170
- UniProtKB: F7AEH4 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000093990 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000179020 ENTREZGENE
MGD MGI:3646874 ENTREZGENE
NCBI Gene 665463 ENTREZGENE
PhenoGen Rps12-ps12 PhenoGen
UniProt F7AEH4 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-30 Rps12-ps12  ribosomal protein S12, pseudogene 12  Gm7643  predicted pseudogene 7643  Symbol and/or name change 5135510 APPROVED
2011-07-27 Gm7643  predicted pseudogene 7643  Gm7643  predicted gene 7643  Symbol and/or name change 5135510 APPROVED