Samd1 (sterile alpha motif domain containing 1)

Gene: Samd1 (sterile alpha motif domain containing 1) Mus musculus

Analyze

Symbol:

Samd1

Name:

sterile alpha motif domain containing 1

RGD ID:

1614554

MGI Page

MGI

Description:

Enables low-density lipoprotein particle binding activity. Involved in foam cell differentiation; lipoprotein lipid oxidation; and negative regulation of transcription by RNA polymerase II. Is active in extracellular space. Is expressed in several structures, including alimentary system; extraembryonic component; hemolymphoid system gland; umbilical artery; and umbilical vein. Orthologous to human SAMD1 (sterile alpha motif domain containing 1).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

AA589507; atherin; SAM domain-containing protein 1; sterile alpha motif domain-containing protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	84,724,145 - 84,727,044 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	84,724,130 - 84,727,038 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	83,997,516 - 84,000,415 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	83,997,501 - 84,000,409 (+)	Ensembl	GRCm38		mm10	GRCm38
GRCm38.p6 Ensembl	8	83,997,672 - 84,000,409 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	86,521,571 - 86,524,285 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	86,887,777 - 86,890,491 (+)	NCBI		MGSCv36	mm8
Celera	8	88,278,279 - 88,293,704 (+)	NCBI		Celera
Cytogenetic Map	8	C2	NCBI
cM Map	8	40.24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

(1->4)-beta-D-glucan (EXP)

1,2-dimethylhydrazine (EXP)

4,4'-sulfonyldiphenol (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ampicillin (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

CGP 52608 (ISO)

chlordecone (EXP)

chlorpyrifos (EXP)

cyclosporin A (ISO)

dibutyl phthalate (EXP)

FR900359 (ISO)

lead(0) (ISO)

ozone (ISO)

perfluorooctane-1-sulfonic acid (EXP)

resveratrol (ISO)

sodium arsenite (ISO)

triptonide (EXP)

urethane (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin organization (IEA)

foam cell differentiation (IDA)

lipoprotein lipid oxidation (IDA)

negative regulation of transcription by RNA polymerase II (IDA)

protein homooligomerization (ISO)

regulation of DNA methylation-dependent heterochromatin formation (ISO)

Cellular Component

chromosome (IEA)

extracellular region (IEA)

extracellular space (IDA)

nucleus (ISO)

Molecular Function

chromatin binding (ISO)

DNA binding (IEA)

low-density lipoprotein particle binding (IDA)

protein binding (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal adipose tissue amount (IAGP)

abnormal bronchiole morphology (IAGP)

abnormal circulating insulin level (IAGP)

abnormal embryo development (IAGP)

abnormal glucose tolerance (IAGP)

abnormal heart development (IAGP)

abnormal liver development (IAGP)

abnormal lung development (IAGP)

abnormal neurocranium morphology (IAGP)

abnormal vascular development (IAGP)

absent umbilical cord blood vessels (IAGP)

absent visceral yolk sac (IAGP)

decreased body weight (IAGP)

decreased circulating HDL cholesterol level (IAGP)

decreased circulating VLDL cholesterol level (IAGP)

decreased erythrocyte cell number (IAGP)

decreased fetal size (IAGP)

edema (IAGP)

exencephaly (IAGP)

fetal growth retardation (IAGP)

hemorrhage (IAGP)

increased circulating aldosterone level (IAGP)

increased circulating angiotensin II level (IAGP)

increased circulating corticosterone level (IAGP)

lethality during fetal growth through weaning, complete penetrance (IAGP)

pale placenta (IAGP)

pale yolk sac (IAGP)

pallor (IAGP)

poor circulation (IAGP)

postnatal lethality, incomplete penetrance (IAGP)

premature bone ossification (IAGP)

skeletal muscle degeneration (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:14610273	PMID:16602821	PMID:21873635	PMID:34006929	PMID:34709266	PMID:36810619

Genomics

Comparative Map Data

Samd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	84,724,145 - 84,727,044 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	84,724,130 - 84,727,038 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	83,997,516 - 84,000,415 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	83,997,501 - 84,000,409 (+)	Ensembl	GRCm38		mm10	GRCm38
GRCm38.p6 Ensembl	8	83,997,672 - 84,000,409 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	86,521,571 - 86,524,285 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	86,887,777 - 86,890,491 (+)	NCBI		MGSCv36	mm8
Celera	8	88,278,279 - 88,293,704 (+)	NCBI		Celera
Cytogenetic Map	8	C2	NCBI
cM Map	8	40.24	NCBI

SAMD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	14,087,851 - 14,090,751 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	14,087,851 - 14,091,036 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	14,198,663 - 14,201,563 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	14,060,229 - 14,062,232 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	14,060,228 - 14,062,232	NCBI
Celera	19	14,093,031 - 14,122,123 (-)	NCBI		Celera
Cytogenetic Map	19	p13.12	NCBI
HuRef	19	13,770,885 - 13,799,416 (-)	NCBI		HuRef
CHM1_1	19	14,199,799 - 14,201,760 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	14,214,143 - 14,217,618 (-)	NCBI		T2T-CHM13v2.0

Samd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	41,055,898 - 41,059,243 (-)	NCBI		GRCr8
mRatBN7.2	19	24,151,136 - 24,154,475 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	24,151,128 - 24,154,488 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	19	25,119,560 - 25,122,781 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	25,120,128 - 25,122,233 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	36,096,683 - 36,099,659 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	25,837,118 - 25,839,193 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	25,841,978 - 25,843,961 (-)	NCBI
Celera	19	23,699,355 - 23,701,352 (-)	NCBI		Celera
Cytogenetic Map	19	q11	NCBI

Samd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955415	32,789,937 - 32,791,421 (-)	NCBI	ChiLan1.0	ChiLan1.0

SAMD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	19,019,983 - 19,023,265 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	18,021,672 - 18,024,901 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	13,653,166 - 13,656,397 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	14,380,192 - 14,381,843 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

SAMD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	48,427,935 - 48,430,703 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	48,302,467 - 48,305,418 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	48,945,742 - 48,948,700 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	20	48,156,927 - 48,159,873 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	48,583,486 - 48,586,439 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	48,826,306 - 48,829,256 (+)	NCBI		UU_Cfam_GSD_1.0

Samd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	207,608,258 - 207,609,749 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936659	2,744,967 - 2,750,135 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SAMD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	65,096,187 - 65,099,794 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	65,096,499 - 65,099,799 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	65,371,876 - 65,373,944 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SAMD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	12,735,255 - 12,743,871 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666074	6,916,107 - 6,919,352 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Samd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624901	1,315,854 - 1,318,152 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624901	1,315,309 - 1,318,167 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Samd1
52 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	253
Count of miRNA genes:	186
Interacting mature miRNAs:	208
Transcripts:	ENSMUST00000095228
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32506572	117965439	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	35109930	115563747	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36630154	93455280	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37867154	110326632	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	40162297	95416226	Mouse
14700686	Civq3_m	cerebral infarct volume QTL 3 (mouse)					8	52334843	86334843	Mouse
1301506	Aevm1_m	autoimmune extremity vasculitis in MRL mice 1 (mouse)			Not determined		8	54740461	88740637	Mouse
1301952	Im3_m	immunoregulatory 3 (mouse)			Not determined		8	55159258	89159407	Mouse
10412287	Carg3_m	Candida albicans resistance gene 3 (mouse)			Not determined		8	56298872	90298872	Mouse
11353828	Gf7_m	gonadal fat pad weight 7 (mouse)					8	58928107	92928107	Mouse
10043975	Obq31_m	obesity QTL 31 (mouse)			Not determined		8	59136404	93136404	Mouse
1301688	Orch6_m	autoimmune orchitis resistance 6 (mouse)			Not determined		8	61513479	95513605	Mouse
4141285	Tgq18_m	triglyceride QTL 18 (mouse)			Not determined			64186736	98186736	Mouse
4141797	Skmw16_m	skeletal muscle weight 16 (mouse)			Not determined		8	64666176	98666325	Mouse
1357787	Vtbt5_m	vertebral trabecular bone trait 5 (mouse)			Not determined		8	66084397	100084549	Mouse
10043992	Hbnr11_m	Heligmosomoides bakeri nematode resistance 11 (mouse)			Not determined		8	66326836	100326976	Mouse
4142283	Imraq2_m	immune response to AAV2 QTL 2 (mouse)			Not determined		8	71032003	105032123	Mouse
1301767	Fcsa2_m	femoral cross-sectional area 2 (mouse)			Not determined		8	71032003	105032123	Mouse
4141395	Char2a_m	P. chabaudi malaria resistance QTL 2a (mouse)			Not determined			71589427	90929226	Mouse
1357708	Orq1_m	ovulation rate QTL 1 (mouse)			Not determined		8	71740461	124622354	Mouse
4142023	W3q5_m	weight 3 weeks QTL 5 (mouse)			Not determined			71740461	124622354	Mouse
1558780	Idd22_m	insulin dependent diabetes susceptibility 22 (mouse)			Not determined		8	71829531	105829637	Mouse
1301872	Cd4ts3_m	CD4 T cell subset 3 (mouse)			Not determined		8	72122809	106123021	Mouse
1300920	Pitm3_m	prion incubation time 3 (mouse)			Not determined		8	73929123	107929226	Mouse
27095912	Pglq14_m	pelvic girdle length QTL 14, 16 week (mouse)					8	74126628	126826739	Mouse
1558890	Lith18_m	lithogenic gene 18 (mouse)			Not determined		8	76402145	110402251	Mouse
1357470	Obq16_m	obesity QTL 16 (mouse)			Not determined		8	76411976	110412125	Mouse
10412234	Nhdlq14_m	non-HDL QTL 14 (mouse)			Not determined		8	76411976	110412125	Mouse
1301874	Hdlq16_m	HDL QTL 16 (mouse)			Not determined		8	76411976	110412125	Mouse
1301099	Cbm2_m	cerebellum weight 2 (mouse)			Not determined		8	79245241	113245331	Mouse
1301581	Char2_m	P. chabaudi malaria resistance QTL 2 (mouse)			Not determined		8	79808806	113809031	Mouse
12904012	Cfq10_m	conditioned fear QTL 10 (mouse)					8	80793404	89740987	Mouse
10755530	Wbc2_m	white blood cell count 2 (mouse)					8	81819296	115819296	Mouse
10755519	Wbc1_m	white blood cell count 1 (mouse)					8	82345783	116345783	Mouse

Markers in Region

RH128078

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	83,996,060 - 83,996,278	UniSTS	GRCm38
MGSCv37	8	86,519,959 - 86,520,177	UniSTS	GRCm37
Celera	8	88,289,260 - 88,289,478	UniSTS
Cytogenetic Map	8	C3	UniSTS

RH94810

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	X	161,484,061 - 161,484,176	UniSTS	GRCm38
GRCm38	8	83,995,965 - 83,996,079	UniSTS	GRCm38
MGSCv37	8	86,519,864 - 86,519,978	UniSTS	GRCm37
MGSCv37	X	157,921,993 - 157,922,108	UniSTS	GRCm37
Celera	8	88,289,165 - 88,289,279	UniSTS
Celera	X	144,721,668 - 144,721,783	UniSTS
Cytogenetic Map	8	C3	UniSTS

RH124985

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	83,999,833 - 84,000,153	UniSTS	GRCm38
MGSCv37	8	86,523,732 - 86,524,052	UniSTS	GRCm37
Celera	8	88,293,151 - 88,293,471	UniSTS
Cytogenetic Map	8	C3	UniSTS

Prkaca

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	83,996,024 - 83,996,207	UniSTS	GRCm38
GRCm38	X	161,483,952 - 161,484,116	UniSTS	GRCm38
MGSCv37	X	157,921,884 - 157,922,048	UniSTS	GRCm37
MGSCv37	8	86,519,923 - 86,520,106	UniSTS	GRCm37
Celera	8	88,289,224 - 88,289,407	UniSTS
Celera	X	144,721,559 - 144,721,723	UniSTS
Cytogenetic Map	8	C3	UniSTS
cM Map	8		UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001081415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC156028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000095228 ⟹ ENSMUSP00000092853

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	84,724,130 - 84,727,038 (+)	Ensembl
GRCm38.p6 Ensembl	8	83,997,501 - 84,000,409 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000209606

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	84,725,053 - 84,725,493 (+)	Ensembl
GRCm38.p6 Ensembl	8	83,998,424 - 83,998,864 (+)	Ensembl

RefSeq Acc Id:

NM_001081415 ⟹ NP_001074884

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	84,724,145 - 84,727,044 (+)	NCBI
GRCm38	8	83,997,516 - 84,000,415 (+)	NCBI
MGSCv37	8	86,521,571 - 86,524,285 (+)	RGD
Celera	8	88,278,279 - 88,293,704 (+)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

CGAAGAAACAGCAGCGCCGCCGCCGCTCCGCCGAGGCGCTGCGCCCCCCGGGGGGAGGCGGAGG
AGGCGGGCAGCGGCGGAGGGAGGGGAGCGGGGAGGGGGCGCCGCGCTGGGAGGGAGGCAGCGCG
CACCGTGCAGCCGGGCCGGGCGGGAGGCATGGCGGGGCCCCCGGCCCTACCCCCGCCGGAGACG
GCGGCGGCCGCCACCACGGCGGCCGCCGCCTCGTCGTCCGCCGCTTCCCCGCACTACCAAGAGT
GGATTCTGGACACCATCGACTCGCTGCGCTCGCGCAAGGCGCGGCCGGACCTGGAGCGCATCTG
CCGGATGGTGCGGCGGCGGCACGGCCCGGAGCCGGAGCGCACGCGCGCGGAGCTCGAGAAACTG
ATCCAGCAGCGCGCCGTGCTCCGGGTCAGCTACAAGGGGAGCATCTCGTACCGCAACGCGGCGC
GCGTCCAGCCGCCCCGCCGCGGAGCCACCCCACCCGCCCCGCCGCGCGTCCCCCGCGGGGGCCC
CGCCGCGCCGCCGCCCACGCCCGCCCCGCCGCCCGCGCCCGTCGCCGCCCCGACCCGGGCGCCC
CGCGCGGCCGCCGCCACAGCGCCCCCTTCTCCCGGCCCCGCGCAGCCGGGTCCCCGGGCGCAGC
GGGCCGCGCCCCTGGCCGCGCCGCCACCAGCGCCCGCCGCGCCCCCGGCCGCGGCGCCCCCAGC
CGGCCCGCGCCGTGCACCGCCGCCCGCCGTCGCCGCCCGGGAGCCGCCGGCGCCGCCACAGCAG
CAGCAGCCGCCACCGCCGCAGCCACAGCCGCCGCCGGAGGGGGGCGCGGCGCGGGCGGGCGGCC
CGGCGCGGCCCGTGAGCCTGCGGGAAGTCGTGCGCTACCTCGGGGGCAGTGGCGGCGCCAGCGG
CCGCCTCACTCGCGGCCGCGTGCAGGGGCTGCTGGAAGAGGAAGCGGCGCGAGGCCGTCTGGAG
CGCACCCGCCTGGGAGCGCTCGCGCTACCCCGCGGAGACAGGCCGGGACGGGCGCCGCCGGCCG
CTAGCGCACGCGCGGCGCGGAGCAAGAGAGGTGGAGAAGAACGGGTGTTTGAGAAAGAAGAGGA
AGATGAGGATGAAGACGAGGAGGAGGAGGAGGAGGACAATGTATCTGAGGGCTCAGAAGTGCCC
GAGAGTGACCGCCCCGCAGGTGCTCAGCACCATCAGATTAATGGAGAGCGGGGCCCTCAGAGTG
CTAAGGAGAGGGTCAAGGAGTGGTCGCCCTGTGGACCCTACCAGGGCCAGGATGAAGGACGGGG
ACCAGCACCTGGCAGCTGCACACGGCAGGTGTTCCCGATGACAGCTGTGAATAAAGAAGGGGGA
TCAGCTTGTGTTGGAGCAGCTCCAGATTCTCCATCTCCGGTGCCTTTGCCTCCAGGAAAACCAG
CTCTACCTGGGGCTGATGGGACACCTTTTGGCTGTCCTCCCGGGCGCAAGGAGAAGCCGACAGA
CCCAGTGGAGTGGACAGTCATGGATGTGGTGGAATACTTCACTGAGGCGGGCTTCCCAGAGCAG
GCCACTGCTTTTCAAGAGCAGGAAATTGATGGCAAGTCTTTGTTGCTCATGCAACGGACAGATG
TGCTCACTGGCCTATCCATTCGCCTGGGCCCAGCCCTGAAGATCTACGAGCACCACATCAAGGT
GCTTCAGCAAGGCCACTTTGAGGATGATGATCCTGATGGCCTTCTAGGCTGAGCACCCAGCCAT
GTCCCCACCCCAACCAGTCCAGACTGCACCCAGGGCGGCTCCATAGTCCAGGAGCTGGGCATGG
GTACACTCAACCTTCCTAACAGACTCCAGGGAGGGGGTGCCCTTCTCCATTCTCCCCCTTTTCT
CACACCCCTGACCTTAGTTCACCCCTCTCCACAGCAGTGGAGTATGGGGTTGGAGGACTTGGTT
GGCTCATTTACCTGGGGTCACCCTTTCTCCCCAGACCAGGACATTTTTGAAAAACAAAAAAACG
GGAGCTTCCTGTGGCCCCAAACCCCTCTTCAGTTCAGCCAGATGTATCTTATATGTGTTTTGTT
CTGCCTATTCATCCTGGTGGTGGTTTTTTCCTCGTCCCACCACCCCCGTGTCCTCCCCCTTGAC
CCCCAGCCTCTGGGGAACAGGTGAGGTAAGGGACCTTGGGTCCTCTTGTCCTTCCCTTTCTGTC
TGTCTACTATTGTACCACCTGGCTGTATTGCTTTTTAATATTGCACCGAAGGTTTTTTAAATAA
AACTTTAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001074884	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	D3YXK1	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000092853
	ENSMUSP00000092853.4

RefSeq Acc Id:

NP_001074884 ⟸ NM_001081415

- UniProtKB:

D3YXK1 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MAGPPALPPPETAAAATTAAAASSSAASPHYQEWILDTIDSLRSRKARPDLERICRMVRRRHGP
EPERTRAELEKLIQQRAVLRVSYKGSISYRNAARVQPPRRGATPPAPPRVPRGGPAAPPPTPAP
PPAPVAAPTRAPRAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAAAPPAGPRRAPPPA
VAAREPPAPPQQQQPPPPQPQPPPEGGAARAGGPARPVSLREVVRYLGGSGGASGRLTRGRVQG
LLEEEAARGRLERTRLGALALPRGDRPGRAPPAASARAARSKRGGEERVFEKEEEDEDEDEEEE
EEDNVSEGSEVPESDRPAGAQHHQINGERGPQSAKERVKEWSPCGPYQGQDEGRGPAPGSCTRQ
VFPMTAVNKEGGSACVGAAPDSPSPVPLPPGKPALPGADGTPFGCPPGRKEKPTDPVEWTVMDV
VEYFTEAGFPEQATAFQEQEIDGKSLLLMQRTDVLTGLSIRLGPALKIYEHHIKVLQQGHFEDD
DPDGLLG

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RefSeq Acc Id:

ENSMUSP00000092853 ⟸ ENSMUST00000095228

Protein Domains

SAM SAMD1-like winged helix (WH)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3YXK1-F1-model_v2	AlphaFold	D3YXK1	1-519	view protein structure

Promoters

RGD ID:

8667631

Promoter ID:

EPDNEW_M11847

Type:

multiple initiation site

Name:

Samd1_1

Description:

Mus musculus sterile alpha motif domain containing 1 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	83,997,638 - 83,997,698	EPDNEW

RGD ID:

6848892

Promoter ID:

MM_TRO:9598

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3

Transcripts:

MTR039498.8.1503.0

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	86,519,939 - 86,520,439 (+)	MPROMDB

RGD ID:

6843691

Promoter ID:

MM_KWN:55039

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

NM_001081415

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	86,520,611 - 86,522,432 (+)	MPROMDB

RGD ID:

6848894

Promoter ID:

MM_TRO:9599

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day2, 3T3L1_Day3, Kidney, MEF_B6

Transcripts:

MTR039498.8.1503.2

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	86,522,424 - 86,522,924 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:2142433	AgrOrtholog
Ensembl Genes	ENSMUSG00000079003	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000095228	ENTREZGENE
	ENSMUST00000095228.5	UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.150.50	UniProtKB/Swiss-Prot
InterPro	SAM	UniProtKB/Swiss-Prot
	SAM/pointed_sf	UniProtKB/Swiss-Prot
	SAMD1-like_WH	UniProtKB/Swiss-Prot
KEGG Report	mmu:666704	UniProtKB/Swiss-Prot
MGD	MGI:2142433	ENTREZGENE
NCBI Gene	666704	ENTREZGENE
PANTHER	ATHERIN	UniProtKB/Swiss-Prot
	UPF0575 PROTEIN C19ORF67	UniProtKB/Swiss-Prot
Pfam	SAM_1	UniProtKB/Swiss-Prot
	SAMD1_WH	UniProtKB/Swiss-Prot
PhenoGen	Samd1	PhenoGen
PROSITE	SAM_DOMAIN	UniProtKB/Swiss-Prot
	SAMD1_WH	UniProtKB/Swiss-Prot
SMART	SAM	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF47769	UniProtKB/Swiss-Prot
UniProt	D3YXK1	ENTREZGENE, UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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