Cdc42se2 (CDC42 small effector 2) - Rat Genome Database

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Gene: Cdc42se2 (CDC42 small effector 2) Mus musculus
Analyze
Symbol: Cdc42se2
Name: CDC42 small effector 2
RGD ID: 1614316
MGI Page MGI
Description: Predicted to enable signaling adaptor activity. Predicted to be involved in regulation of signal transduction. Predicted to act upstream of or within phagocytosis and regulation of cell shape. Predicted to be located in several cellular components, including cell projection; cytoplasm; and cytoskeleton. Predicted to be active in plasma membrane. Orthologous to human CDC42SE2 (CDC42 small effector 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810404F18Rik; AA408783; AA536669; CDC42 small effector protein 2; RP23-287F5.2; SPE; SPEC2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391154,608,241 - 54,678,549 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1154,608,282 - 54,678,501 (-)EnsemblGRCm39 Ensembl
GRCm381154,717,415 - 54,787,703 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1154,717,456 - 54,787,675 (-)EnsemblGRCm38mm10GRCm38
MGSCv371154,530,917 - 54,601,205 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361154,560,925 - 54,631,059 (-)NCBIMGSCv36mm8
Celera1159,304,569 - 59,374,793 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1132.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10512203   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273  
PMID:15782199   PMID:15840001   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693   PMID:21677750   PMID:21873635   PMID:38187761  


Genomics

Comparative Map Data
Cdc42se2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391154,608,241 - 54,678,549 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1154,608,282 - 54,678,501 (-)EnsemblGRCm39 Ensembl
GRCm381154,717,415 - 54,787,703 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1154,717,456 - 54,787,675 (-)EnsemblGRCm38mm10GRCm38
MGSCv371154,530,917 - 54,601,205 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361154,560,925 - 54,631,059 (-)NCBIMGSCv36mm8
Celera1159,304,569 - 59,374,793 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1132.13NCBI
CDC42SE2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385131,210,052 - 131,394,672 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5131,245,493 - 131,398,447 (+)EnsemblGRCh38hg38GRCh38
GRCh375130,599,746 - 130,730,365 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365130,627,601 - 130,758,282 (+)NCBINCBI36Build 36hg18NCBI36
Build 345130,723,085 - 130,754,683NCBI
Celera5126,730,097 - 126,860,712 (+)NCBICelera
Cytogenetic Map5q31.1NCBI
HuRef5125,790,800 - 125,921,594 (+)NCBIHuRef
CHM1_15130,032,671 - 130,163,278 (+)NCBICHM1_1
T2T-CHM13v2.05131,728,731 - 131,914,233 (+)NCBIT2T-CHM13v2.0
Cdc42se2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81039,337,269 - 39,405,772 (-)NCBIGRCr8
mRatBN7.21038,836,549 - 38,905,056 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl191,287,876 - 91,288,130 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1038,836,555 - 38,905,059 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1043,521,943 - 43,593,879 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01043,012,021 - 43,083,966 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01038,515,736 - 38,587,673 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01040,054,393 - 40,122,915 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1040,054,400 - 40,122,915 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01039,827,142 - 39,895,658 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41040,116,093 - 40,184,995 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1038,175,018 - 38,243,633 (-)NCBICelera
Cytogenetic Map10q22NCBI
Cdc42se2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554082,844,135 - 2,881,800 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554082,780,126 - 2,881,800 (+)NCBIChiLan1.0ChiLan1.0
CDC42SE2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24126,683,492 - 126,722,496 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15124,724,704 - 124,862,124 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05126,689,882 - 126,827,208 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15132,860,010 - 132,989,170 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5132,954,110 - 132,989,170 (+)Ensemblpanpan1.1panPan2
CDC42SE2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11119,641,815 - 19,757,867 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1119,641,901 - 19,756,814 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1118,438,881 - 18,554,632 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01120,419,749 - 20,535,788 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1120,418,958 - 20,535,762 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11119,148,433 - 19,263,942 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01118,995,277 - 19,110,822 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01119,593,967 - 19,709,749 (+)NCBIUU_Cfam_GSD_1.0
Cdc42se2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213116,666,379 - 116,731,735 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366473,669,209 - 3,734,491 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366473,669,141 - 3,734,515 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDC42SE2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2133,638,588 - 133,683,880 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12133,564,015 - 133,683,881 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22138,884,571 - 139,002,731 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDC42SE2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12334,123,376 - 34,238,241 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2334,123,409 - 34,238,280 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603443,728,480 - 43,843,987 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdc42se2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473340,632,781 - 40,670,843 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473340,633,503 - 40,670,970 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cdc42se2
1367 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1193
Count of miRNA genes:672
Interacting mature miRNAs:821
Transcripts:ENSMUST00000064104, ENSMUST00000123424, ENSMUST00000135903, ENSMUST00000136059, ENSMUST00000153209
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115406567067078411Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115408094165103841Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5406567063319522Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse

Markers in Region
RH136619  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381154,718,075 - 54,718,262UniSTSGRCm38
MGSCv371154,531,577 - 54,531,764UniSTSGRCm37
Celera1159,305,229 - 59,305,416UniSTS
Cytogenetic Map11B1.3UniSTS
RH124288  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381154,717,864 - 54,718,000UniSTSGRCm38
MGSCv371154,531,366 - 54,531,502UniSTSGRCm37
Celera1159,305,018 - 59,305,154UniSTS
Cytogenetic Map11B1.3UniSTS
RH124765  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381154,717,506 - 54,717,751UniSTSGRCm38
MGSCv371154,531,008 - 54,531,253UniSTSGRCm37
Celera1159,304,660 - 59,304,905UniSTS
Cytogenetic Map11B1.3UniSTS
D11Dcr10  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381154,777,830 - 54,777,925UniSTSGRCm38
MGSCv371154,591,332 - 54,591,427UniSTSGRCm37
Celera1159,364,909 - 59,365,008UniSTS
Cytogenetic Map11B1.3UniSTS
cM Map11 UniSTS
PMC37512P4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381154,718,185 - 54,718,469UniSTSGRCm38
MGSCv371154,531,687 - 54,531,971UniSTSGRCm37
Celera1159,305,339 - 59,305,623UniSTS
Cytogenetic Map11B1.3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_178626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK012983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL607091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL954817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY688282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ072588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000064104   ⟹   ENSMUSP00000070725
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,608,282 - 54,678,501 (-)Ensembl
GRCm38.p6 Ensembl1154,717,456 - 54,787,675 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123424
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,631,289 - 54,651,165 (-)Ensembl
GRCm38.p6 Ensembl1154,740,463 - 54,760,339 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135903
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,631,136 - 54,678,451 (-)Ensembl
GRCm38.p6 Ensembl1154,740,310 - 54,787,625 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136059
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,630,812 - 54,678,467 (-)Ensembl
GRCm38.p6 Ensembl1154,739,986 - 54,787,641 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153209   ⟹   ENSMUSP00000120253
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,614,400 - 54,678,472 (-)Ensembl
GRCm38.p6 Ensembl1154,723,574 - 54,787,646 (-)Ensembl
RefSeq Acc Id: NM_178626   ⟹   NP_848741
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,608,241 - 54,678,529 (-)NCBI
GRCm381154,717,415 - 54,787,703 (-)ENTREZGENE
MGSCv371154,530,917 - 54,601,205 (-)RGD
Celera1159,304,569 - 59,374,793 (-)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006534320   ⟹   XP_006534383
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,608,277 - 54,678,549 (-)NCBI
GRCm381154,717,451 - 54,787,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246369   ⟹   XP_030102229
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,608,277 - 54,678,549 (-)NCBI
GRCm381154,717,451 - 54,787,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246370   ⟹   XP_030102230
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,608,277 - 54,678,374 (-)NCBI
GRCm381154,717,451 - 54,787,548 (-)NCBI
Sequence:
RefSeq Acc Id: NP_848741   ⟸   NM_178626
- UniProtKB: Q3UKN9 (UniProtKB/Swiss-Prot),   Q8BGH7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006534383   ⟸   XM_006534320
- Peptide Label: isoform X1
- UniProtKB: Q3UKN9 (UniProtKB/Swiss-Prot),   Q8BGH7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030102229   ⟸   XM_030246369
- Peptide Label: isoform X1
- UniProtKB: Q8BGH7 (UniProtKB/Swiss-Prot),   Q3UKN9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030102230   ⟸   XM_030246370
- Peptide Label: isoform X1
- UniProtKB: Q8BGH7 (UniProtKB/Swiss-Prot),   Q3UKN9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000120253   ⟸   ENSMUST00000153209
RefSeq Acc Id: ENSMUSP00000070725   ⟸   ENSMUST00000064104
Protein Domains
CRIB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BGH7-F1-model_v2 AlphaFold Q8BGH7 1-84 view protein structure

Promoters
RGD ID:6820598
Promoter ID:MM_KWN:7458
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_178626,   OTTMUST00000012639,   OTTMUST00000012640,   OTTMUST00000012641
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361154,600,911 - 54,601,411 (-)MPROMDB
RGD ID:8674666
Promoter ID:EPDNEW_M15364
Type:initiation region
Name:Cdc42se2_2
Description:Mus musculus CDC42 small effector 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15365  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381154,764,162 - 54,764,222EPDNEW
RGD ID:8674668
Promoter ID:EPDNEW_M15365
Type:initiation region
Name:Cdc42se2_1
Description:Mus musculus CDC42 small effector 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15364  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381154,787,653 - 54,787,713EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919979 AgrOrtholog
Ensembl Genes ENSMUSG00000052298 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000064104 ENTREZGENE
  ENSMUST00000064104.13 UniProtKB/Swiss-Prot
  ENSMUST00000153209.8 UniProtKB/TrEMBL
Gene3D-CATH 3.90.810.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CRIB_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CRIB_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPEC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:72729 UniProtKB/Swiss-Prot
MGD MGI:1919979 ENTREZGENE
NCBI Gene 72729 ENTREZGENE
PANTHER CDC42 SMALL EFFECTOR PROTEIN 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13502 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cdc42se2 PhenoGen
PROSITE CRIB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B1AZK1_MOUSE UniProtKB/TrEMBL
  C42S2_MOUSE UniProtKB/Swiss-Prot
  Q3UKN9 ENTREZGENE
  Q8BGH7 ENTREZGENE
UniProt Secondary Q3UKN9 UniProtKB/Swiss-Prot