Eldr (Egfr long non-coding downstream RNA) - Rat Genome Database

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Gene: Eldr (Egfr long non-coding downstream RNA) Mus musculus
Analyze
Symbol: Eldr
Name: Egfr long non-coding downstream RNA
RGD ID: 1614315
MGI Page MGI
Description: Acts upstream of or within regulation of gene expression and response to wounding. Is expressed in brain; cortical layer VI; neocortex; telencephalon mantle layer; and telencephalon ventricular layer. Orthologous to human ELDR (EGFR long non-coding downstream RNA).
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: 2810442I21Rik; 4930500E12Rik; Fa; Fabl
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391116,884,709 - 16,901,282 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1116,884,590 - 16,901,282 (-)EnsemblGRCm39 Ensembl
GRCm381116,934,709 - 16,951,282 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1116,935,154 - 16,951,282 (-)EnsemblGRCm38mm10GRCm38
MGSCv371116,836,726 - 16,851,096 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361116,834,712 - 16,851,121 (-)NCBIMGSCv36mm8
Celera1117,310,679 - 17,324,858 (-)NCBICelera
Cytogenetic Map11A2NCBI
cM Map119.41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11812828   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693   PMID:24200680  
PMID:24381249   PMID:24917243   PMID:25909911   PMID:26034286   PMID:27899360   PMID:33860640   PMID:36868238  


Genomics

Comparative Map Data
Eldr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391116,884,709 - 16,901,282 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1116,884,590 - 16,901,282 (-)EnsemblGRCm39 Ensembl
GRCm381116,934,709 - 16,951,282 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1116,935,154 - 16,951,282 (-)EnsemblGRCm38mm10GRCm38
MGSCv371116,836,726 - 16,851,096 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361116,834,712 - 16,851,121 (-)NCBIMGSCv36mm8
Celera1117,310,679 - 17,324,858 (-)NCBICelera
Cytogenetic Map11A2NCBI
cM Map119.41NCBI
ELDR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38755,238,436 - 55,255,635 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl755,235,965 - 55,255,635 (-)EnsemblGRCh38hg38GRCh38
GRCh37755,306,129 - 55,323,328 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7p11.2NCBI
CHM1_1755,308,406 - 55,325,605 (-)NCBICHM1_1
T2T-CHM13v2.0755,399,005 - 55,416,204 (-)NCBIT2T-CHM13v2.0

Variants

.
Variants in Eldr
514 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:307
Count of miRNA genes:204
Interacting mature miRNAs:214
Transcripts:ENSMUST00000123734, ENSMUST00000129735, ENSMUST00000130392, ENSMUST00000136053, ENSMUST00000139271, ENSMUST00000139493, ENSMUST00000142777
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10053676Eae44a_mexperimental allergic encephalomyelitis susceptibility 44a (mouse)Not determined11450789621379532Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse

Markers in Region
BB373962  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381116,936,837 - 16,936,934UniSTSGRCm38
MGSCv371116,836,840 - 16,836,937UniSTSGRCm37
Celera1117,310,793 - 17,310,890UniSTS
Cytogenetic Map11A2UniSTS
Whitehead/MRC_RH11151.7UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_110421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_110422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_110423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_110424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_110425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK013290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI990615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY467568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000123734
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,884,593 - 16,901,127 (-)Ensembl
GRCm38.p6 Ensembl1116,935,322 - 16,951,042 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129735
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,885,586 - 16,901,100 (-)Ensembl
GRCm38.p6 Ensembl1116,935,586 - 16,951,100 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130392
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,884,590 - 16,901,127 (-)Ensembl
GRCm38.p6 Ensembl1116,935,154 - 16,951,099 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136053
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,885,150 - 16,901,282 (-)Ensembl
GRCm38.p6 Ensembl1116,935,629 - 16,951,282 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139271
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,885,702 - 16,901,082 (-)Ensembl
GRCm38.p6 Ensembl1116,935,702 - 16,951,082 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139493
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,885,153 - 16,901,127 (-)Ensembl
GRCm38.p6 Ensembl1116,935,159 - 16,951,118 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142777
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,889,187 - 16,901,093 (-)Ensembl
GRCm38.p6 Ensembl1116,939,187 - 16,951,093 (-)Ensembl
RefSeq Acc Id: ENSMUST00000241211
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,885,150 - 16,901,122 (-)Ensembl
RefSeq Acc Id: ENSMUST00000241340
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,885,154 - 16,901,125 (-)Ensembl
RefSeq Acc Id: ENSMUST00000241360
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,885,150 - 16,901,126 (-)Ensembl
RefSeq Acc Id: ENSMUST00000241498
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,885,154 - 16,901,105 (-)Ensembl
RefSeq Acc Id: ENSMUST00000241798
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,885,642 - 16,901,114 (-)Ensembl
RefSeq Acc Id: ENSMUST00000242695
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,885,154 - 16,901,125 (-)Ensembl
RefSeq Acc Id: ENSMUST00000243630
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,885,150 - 16,901,124 (-)Ensembl
RefSeq Acc Id: ENSMUST00000244026
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,885,154 - 16,901,117 (-)Ensembl
RefSeq Acc Id: ENSMUST00000244040
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,885,638 - 16,901,117 (-)Ensembl
RefSeq Acc Id: ENSMUST00000244209
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,885,154 - 16,901,117 (-)Ensembl
RefSeq Acc Id: ENSMUST00000245157
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,885,619 - 16,901,093 (-)Ensembl
RefSeq Acc Id: ENSMUST00000245314
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,885,154 - 16,901,072 (-)Ensembl
RefSeq Acc Id: ENSMUST00000245704
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,885,619 - 16,901,098 (-)Ensembl
RefSeq Acc Id: ENSMUST00000245747
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,885,154 - 16,901,122 (-)Ensembl
RefSeq Acc Id: ENSMUST00000245859
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,885,164 - 16,901,110 (-)Ensembl
RefSeq Acc Id: ENSMUST00000246615
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,900,229 - 16,901,122 (-)Ensembl
RefSeq Acc Id: NR_110421
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391116,884,709 - 16,901,282 (-)NCBI
GRCm381116,934,709 - 16,951,282 (-)NCBI
Celera1117,308,665 - 17,325,042 (-)NCBI
Sequence:
RefSeq Acc Id: NR_110422
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391116,884,709 - 16,901,282 (-)NCBI
GRCm381116,934,709 - 16,951,282 (-)NCBI
Celera1117,308,665 - 17,325,042 (-)NCBI
Sequence:
RefSeq Acc Id: NR_110423
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391116,884,709 - 16,901,282 (-)NCBI
GRCm381116,934,709 - 16,951,282 (-)NCBI
Celera1117,308,665 - 17,325,042 (-)NCBI
Sequence:
RefSeq Acc Id: NR_110424
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391116,884,709 - 16,901,282 (-)NCBI
GRCm381116,934,709 - 16,951,282 (-)NCBI
Celera1117,308,665 - 17,325,042 (-)NCBI
Sequence:
RefSeq Acc Id: NR_110425
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391116,884,709 - 16,901,282 (-)NCBI
GRCm381116,934,709 - 16,951,282 (-)NCBI
Celera1117,308,665 - 17,325,042 (-)NCBI
Sequence:
Protein Sequences
GenBank Protein EDL40670 (Get FASTA)   NCBI Sequence Viewer  
  EDL40672 (Get FASTA)   NCBI Sequence Viewer  
  EDL40673 (Get FASTA)   NCBI Sequence Viewer  

Promoters
RGD ID:6820928
Promoter ID:MM_KWN:6506
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   MEF_B4,   Spleen
Transcripts:NM_176982,   NR_015469,   OTTMUST00000011591,   OTTMUST00000011592,   OTTMUST00000011594,   OTTMUST00000011596,   UC007IBQ.1,   UC007IBR.1,   UC007IBT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361116,850,466 - 16,851,537 (+)MPROMDB
RGD ID:15093887
Promoter ID:EPDNEWNC_M1797
Type:initiation region
Name:Eldr_1
Description:Egfr long non-coding downstream RNA [Source:MGISymbol;Acc:MGI:1919985]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381116,951,081 - 16,951,141EPDNEWNC
RGD ID:8674022
Promoter ID:EPDNEW_M15036
Type:initiation region
Name:Eldr_1
Description:Mus musculus Egfr long non-coding downstream RNA , transcriptvariant 4, long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381116,951,098 - 16,951,158EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919985 AgrOrtholog
Ensembl Genes ENSMUSG00000087060 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000123734 ENTREZGENE
MGD MGI:1919985 ENTREZGENE
NCBI Gene 72735 ENTREZGENE
PhenoGen Eldr PhenoGen
RNAcentral URS0000759A7C RNACentral
  URS000075A17E RNACentral
  URS000075AF17 RNACentral
  URS000075C0BD RNACentral
  URS000075C5D6 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-06-10 Eldr  Egfr long non-coding downstream RNA  2810442I21Rik  RIKEN cDNA 2810442I21 gene  Symbol and/or name change 5135510 APPROVED