4930563E22Rik (RIKEN cDNA 4930563E22 gene) - Rat Genome Database
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Gene: 4930563E22Rik (RIKEN cDNA 4930563E22 gene) Mus musculus
Analyze
Symbol: 4930563E22Rik
Name: RIKEN cDNA 4930563E22 gene
RGD ID: 1614291
MGI Page MGI
Description: Orthologous to human C17orf100 (chromosome 17 open reading frame 100); INTERACTS WITH benzo[a]pyrene (ortholog); bisphenol A (ortholog); cisplatin (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: hypothetical protein LOC75304; RP23-207N15.6; uncharacterized protein C17orf100 homolog
RGD Orthologs
Human
Rat
Chinchilla
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,105,964 - 72,109,276 (+)NCBIGRCm39mm39
GRCm39 Ensembl1172,105,964 - 72,109,270 (+)Ensembl
GRCm381172,215,138 - 72,218,450 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,215,138 - 72,218,444 (+)EnsemblGRCm38mm10GRCm38
MGSCv371172,028,640 - 72,031,952 (+)NCBIGRCm37mm9NCBIm37
MGSCv361172,031,333 - 72,034,645 (+)NCBImm8
Celera1179,741,636 - 79,744,941 (+)NCBICelera
Cytogenetic Map11B4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21267068  


Genomics

Comparative Map Data
4930563E22Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,105,964 - 72,109,276 (+)NCBIGRCm39mm39
GRCm39 Ensembl1172,105,964 - 72,109,270 (+)Ensembl
GRCm381172,215,138 - 72,218,450 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,215,138 - 72,218,444 (+)EnsemblGRCm38mm10GRCm38
MGSCv371172,028,640 - 72,031,952 (+)NCBIGRCm37mm9NCBIm37
MGSCv361172,031,333 - 72,034,645 (+)NCBImm8
Celera1179,741,636 - 79,744,941 (+)NCBICelera
Cytogenetic Map11B4NCBI
C17orf100
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl176,651,762 - 6,693,202 (+)EnsemblGRCh38hg38GRCh38
GRCh38176,651,762 - 6,653,476 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37176,555,082 - 6,556,795 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36176,495,783 - 6,497,341 (+)NCBINCBI36hg18NCBI36
Celera176,576,124 - 6,577,683 (+)NCBI
Cytogenetic Map17p13.1NCBI
HuRef176,450,343 - 6,451,907 (+)NCBIHuRef
CHM1_1176,565,345 - 6,566,909 (+)NCBICHM1_1
LOC100912483
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21056,840,451 - 56,843,674 (+)NCBI
Rnor_6.0 Ensembl1058,784,660 - 58,785,043 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01058,784,444 - 58,787,713 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01058,525,065 - 58,528,124 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41059,107,710 - 59,108,313 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1055,970,332 - 55,973,601 (+)NCBICelera
Cytogenetic Map10q24NCBI
LOC102007101
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495546712,155,309 - 12,158,762 (+)NCBIChiLan1.0ChiLan1.0
CUNH17orf100
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366771,341,570 - 1,345,349 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C12H17orf100
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11250,644,783 - 50,728,768 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21252,709,611 - 52,727,624 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH17orf100
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,033,819 - 6,036,649 (+)NCBI
CUNH17orf100
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247867,380,691 - 7,388,513 (-)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5539415972319101Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116910000072600000Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116910000072600000Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116910000072600000Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116910000072600000Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116910000072600000Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116910000072600000Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116910000072600000Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116910000072600000Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116910000072600000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:164
Count of miRNA genes:84
Interacting mature miRNAs:87
Transcripts:ENSMUST00000066087, ENSMUST00000124762
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000066087   ⟹   ENSMUSP00000159068
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1172,215,138 - 72,217,743 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124762   ⟹   ENSMUSP00000159117
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1172,215,172 - 72,218,444 (+)Ensembl
RefSeq Acc Id: NM_001163728   ⟹   NP_001157200
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,105,964 - 72,109,276 (+)NCBI
GRCm381172,215,138 - 72,218,450 (+)ENTREZGENE
MGSCv371172,028,640 - 72,031,952 (+)RGD
Celera1179,741,636 - 79,744,941 (+)RGD
cM Map11 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001157200 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAC31502 (Get FASTA)   NCBI Sequence Viewer  
  BAC31922 (Get FASTA)   NCBI Sequence Viewer  
  BAE21139 (Get FASTA)   NCBI Sequence Viewer  
  Q8BGJ3 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001157200   ⟸   NM_001163728
- UniProtKB: Q8BGJ3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000159068   ⟸   ENSMUST00000066087
RefSeq Acc Id: ENSMUSP00000159117   ⟸   ENSMUST00000124762

Promoters
RGD ID:6821835
Promoter ID:MM_KWN:8308
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:NM_001163728,   OTTMUST00000013774
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361172,028,486 - 72,028,986 (+)MPROMDB
RGD ID:8675420
Promoter ID:EPDNEW_M15741
Type:initiation region
Name:4930563E22Rik_1
Description:Mus musculus RIKEN cDNA 4930563E22 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381172,215,170 - 72,215,230EPDNEW
RGD ID:15093944
Promoter ID:EPDNEWNC_M1859
Type:multiple initiation site
Name:4930563E22Rik_1
Description:RIKEN cDNA 4930563E22 gene [Source:MGISymbol;Acc:MGI:1922554]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381172,215,170 - 72,215,230EPDNEWNC
RGD ID:8675422
Promoter ID:EPDNEW_M15742
Type:initiation region
Name:AK043242_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381172,215,172 - 72,215,232EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1922554 AgrOrtholog
Ensembl Genes ENSMUSG00000053574 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000159068 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000159117 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000066087 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000124762 UniProtKB/Swiss-Prot
KEGG Report mmu:75304 UniProtKB/Swiss-Prot
MGD MGI:1922554 ENTREZGENE
NCBI Gene 75304 ENTREZGENE
PhenoGen 4930563E22Rik PhenoGen
UniProt CQ100_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q3V1L1 UniProtKB/Swiss-Prot