4930563E22Rik (RIKEN cDNA 4930563E22 gene) - Rat Genome Database

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Gene: 4930563E22Rik (RIKEN cDNA 4930563E22 gene) Mus musculus
Analyze
Symbol: 4930563E22Rik
Name: RIKEN cDNA 4930563E22 gene
RGD ID: 1614291
MGI Page MGI
Description: Is expressed in several structures, including alimentary system; brain; genitourinary system; thymus; and trachea. Orthologous to human C17orf100 (chromosome 17 open reading frame 100).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC75304; RP23-207N15.6; uncharacterized protein C17orf100 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,105,964 - 72,109,276 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1172,105,964 - 72,109,270 (+)EnsemblGRCm39 Ensembl
GRCm381172,215,138 - 72,218,450 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,215,138 - 72,218,444 (+)EnsemblGRCm38mm10GRCm38
MGSCv371172,028,640 - 72,031,952 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361172,031,333 - 72,034,645 (+)NCBIMGSCv36mm8
Celera1179,741,636 - 79,744,941 (+)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1143.93NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21267068   PMID:24194600  


Genomics

Comparative Map Data
4930563E22Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,105,964 - 72,109,276 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1172,105,964 - 72,109,270 (+)EnsemblGRCm39 Ensembl
GRCm381172,215,138 - 72,218,450 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,215,138 - 72,218,444 (+)EnsemblGRCm38mm10GRCm38
MGSCv371172,028,640 - 72,031,952 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361172,031,333 - 72,034,645 (+)NCBIMGSCv36mm8
Celera1179,741,636 - 79,744,941 (+)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1143.93NCBI
C17orf100
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38176,651,762 - 6,653,476 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl176,651,762 - 6,693,202 (+)EnsemblGRCh38hg38GRCh38
GRCh37176,555,082 - 6,556,795 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36176,495,783 - 6,497,341 (+)NCBINCBI36Build 36hg18NCBI36
Celera176,576,124 - 6,577,683 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef176,450,343 - 6,451,907 (+)NCBIHuRef
CHM1_1176,565,345 - 6,566,909 (+)NCBICHM1_1
T2T-CHM13v2.0176,552,391 - 6,554,105 (+)NCBIT2T-CHM13v2.0
C10h17orf100
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81057,339,186 - 57,342,233 (+)NCBIGRCr8
mRatBN7.21056,840,451 - 56,843,674 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1056,832,412 - 56,843,871 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01058,784,444 - 58,787,713 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1058,784,660 - 58,785,043 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01058,525,065 - 58,528,124 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41059,107,710 - 59,108,313 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1055,970,332 - 55,973,601 (+)NCBICelera
Cytogenetic Map10q24NCBI
CUNH17orf100
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495546712,155,309 - 12,158,762 (+)NCBIChiLan1.0ChiLan1.0
C19H17orf100
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21914,251,645 - 14,262,831 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11716,217,982 - 16,228,101 (+)NCBINHGRI_mPanPan1
CUNH17orf100
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560254,555,549 - 54,559,438 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366771,341,570 - 1,345,349 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C12H17orf100
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11250,644,783 - 50,728,768 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21252,709,611 - 52,727,624 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH17orf100
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,033,819 - 6,036,649 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605915,403,189 - 15,413,644 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH17orf100
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247867,380,691 - 7,388,513 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in 4930563E22Rik
111 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:164
Count of miRNA genes:84
Interacting mature miRNAs:87
Transcripts:ENSMUST00000066087, ENSMUST00000124762
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116899082672490826Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116899082672490826Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116899082672490826Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116899082672490826Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116899082672490826Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116899082672490826Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116899082672490826Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116899082672490826Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116899082672490826Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000066087   ⟹   ENSMUSP00000159068
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1172,105,964 - 72,108,569 (+)Ensembl
GRCm38.p6 Ensembl1172,215,138 - 72,217,743 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124762   ⟹   ENSMUSP00000159117
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1172,105,998 - 72,109,270 (+)Ensembl
GRCm38.p6 Ensembl1172,215,172 - 72,218,444 (+)Ensembl
RefSeq Acc Id: NM_001163728   ⟹   NP_001157200
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,105,964 - 72,109,276 (+)NCBI
GRCm381172,215,138 - 72,218,450 (+)ENTREZGENE
MGSCv371172,028,640 - 72,031,952 (+)RGD
Celera1179,741,636 - 79,744,941 (+)RGD
cM Map11 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001157200 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAC31502 (Get FASTA)   NCBI Sequence Viewer  
  BAC31922 (Get FASTA)   NCBI Sequence Viewer  
  BAE21139 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000159068
  ENSMUSP00000159068.2
  ENSMUSP00000159117.2
GenBank Protein Q8BGJ3 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001157200   ⟸   NM_001163728
- UniProtKB: Q3V1L1 (UniProtKB/Swiss-Prot),   Q8BGJ3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000159068   ⟸   ENSMUST00000066087
RefSeq Acc Id: ENSMUSP00000159117   ⟸   ENSMUST00000124762

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BGJ3-F1-model_v2 AlphaFold Q8BGJ3 1-129 view protein structure

Promoters
RGD ID:6821835
Promoter ID:MM_KWN:8308
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:NM_001163728,   OTTMUST00000013774
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361172,028,486 - 72,028,986 (+)MPROMDB
RGD ID:8675420
Promoter ID:EPDNEW_M15741
Type:initiation region
Name:4930563E22Rik_1
Description:Mus musculus RIKEN cDNA 4930563E22 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381172,215,170 - 72,215,230EPDNEW
RGD ID:15093944
Promoter ID:EPDNEWNC_M1859
Type:multiple initiation site
Name:4930563E22Rik_1
Description:RIKEN cDNA 4930563E22 gene [Source:MGISymbol;Acc:MGI:1922554]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381172,215,170 - 72,215,230EPDNEWNC
RGD ID:8675422
Promoter ID:EPDNEW_M15742
Type:initiation region
Name:AK043242_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381172,215,172 - 72,215,232EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1922554 AgrOrtholog
Ensembl Genes ENSMUSG00000053574 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000066087 ENTREZGENE
  ENSMUST00000066087.5 UniProtKB/Swiss-Prot
  ENSMUST00000124762.2 UniProtKB/Swiss-Prot
KEGG Report mmu:75304 UniProtKB/Swiss-Prot
MGD MGI:1922554 ENTREZGENE
NCBI Gene 75304 ENTREZGENE
PhenoGen 4930563E22Rik PhenoGen
UniProt CQ100_MOUSE UniProtKB/Swiss-Prot
  Q3V1L1 ENTREZGENE
  Q8BGJ3 ENTREZGENE
UniProt Secondary Q3V1L1 UniProtKB/Swiss-Prot