Lyzl4os (lysozyme-like 4, opposite strand)

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Gene: Lyzl4os (lysozyme-like 4, opposite strand) Mus musculus

Analyze

Symbol:

Lyzl4os

Name:

lysozyme-like 4, opposite strand

RGD ID:

1614281

MGI Page

MGI

Description:

Type:

ncrna

RefSeq Status:

VALIDATED

Also known as:

4930589B17Rik; 4930596M17Rik; hypothetical protein LOC75384; RIKEN cDNA 4930596M17 gene

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	121,416,086 - 121,443,321 (+)	NCBI	GRCm39		mm39
GRCm38	9	121,587,020 - 121,614,255 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	121,586,997 - 121,614,255 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	121,289,741 - 121,317,183 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	121,289,741 - 121,317,183 (+)	NCBI			mm8
Celera	9	122,057,156 - 122,086,923 (+)	NCBI		Celera
Cytogenetic Map	9	F4	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073	PMID:24316575

Genomics

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12880422	V25Dq6_m	vitamin D inactive form serum level QTL 6 (mouse)					9	87800000	121800000	Mouse
10412242	Alpq8_m	alcohol preference QTL 8 (mouse)			Not determined		9	89284925	123284925	Mouse
1301649	Psl1_m	promotion susceptibility QTL 1 (mouse)			Not determined		9	89412277	123412396	Mouse
18182932	Metl3_m	metabolite locus 3, N-acetylglutamate (mouse)					9	89563342	123563342	Mouse
12910770	Splic1_m	spleen iron content 1 (mouse)					9	91413879	124595110	Mouse
12910772	Lvic6_m	liver iron content 6 (mouse)					9	91413879	124595110	Mouse
12910773	Splic3_m	spleen iron content 3 (mouse)					9	91413879	124595110	Mouse
1558767	Skmw11_m	skeletal muscle weight 11 (mouse)			Not determined		9	91641084	124595110	Mouse
13463474	Hbbcq5_m	hemoglobin concentration QTL 5 (mouse)					9	91641084	124595110	Mouse
13463475	Hctq7_m	hematocrit QTL 7 (mouse)					9	91641084	124595110	Mouse
13463477	Rbc9_m	red blood cell count 9 (mouse)					9	91641084	124595110	Mouse
13463478	Mchq18_m	mean corpuscular hemoglobin QTL 18 (mouse)					9	91641084	124595110	Mouse
13463480	Mchcq2_m	mean corpuscular hemoglobin concentration QTL 2 (mouse)					9	91641084	124595110	Mouse
12904937	Edlmmq9_m	extensor digitorum longus muscle mass QTL 9 (mouse)					9	91683173	124595110	Mouse
12904947	Tammq7_m	tibialis anterior muscle mass QTL 7 (mouse)					9	91683173	124595110	Mouse
12904961	Gmmq7_m	gastrocnemius muscle mass QTL 7 (mouse)					9	91683173	124595110	Mouse
1302001	Bdln5_m	body length 5 (mouse)			Not determined		9	93762590	124595110	Mouse
1301484	Bwq6_m	body weight (mouse)			Not determined		9	93762590	124595110	Mouse
14746992	Manh67_m	mandible shape 67 (mouse)					9	94036768	124595110	Mouse
11537364	Cnes5_m	C. neoformans susceptibility locus 5 (mouse)					9	96917590	124595110	Mouse
1301297	Lcho1_m	liver cholesterol 1 (mouse)			Not determined		9	101060861	124595110	Mouse
1357627	Tgq2_m	triglyceride QTL 2 (mouse)			Not determined		9	102000187	124595110	Mouse
1357648	Obq18_m	obesity QTL 18 (mouse)			Not determined		9	102000187	124595110	Mouse
1301789	Pbwg4_m	postnatal body weight growth 4 (mouse)			Not determined		9	103289445	124595110	Mouse
10412290	Pvacm1l_m	plasma vascular cell adhesion molecule 1 levels (mouse)			Not determined		9	103289445	124595110	Mouse
12879896	Berr3_m	berghei resistance locus 3 (mouse)					9	103289445	124595110	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	255
Count of miRNA genes:	220
Interacting mature miRNAs:	232
Transcripts:	ENSMUST00000128080, ENSMUST00000156364
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_040740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC131660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC159810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK016372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK016399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000128080

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	121,586,997 - 121,603,981 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000156364

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	121,587,020 - 121,614,255 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000213548

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	121,602,844 - 121,603,981 (+)	Ensembl

RefSeq Acc Id:

NR_040740

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	121,416,086 - 121,443,321 (+)	NCBI
GRCm38	9	121,587,020 - 121,614,255 (+)	ENTREZGENE
Celera	9	122,057,156 - 122,086,923 (+)	ENTREZGENE
cM Map	9		ENTREZGENE

Sequence:

show sequence

CTGAGACCACATTAGCTTTCCGCCACTGCGACAGATGTGTGAGAAGTCTGACGTGGGCCTCAGG
GTGCCGGCAGGGCCAGGCTCCTTCTGGAGACAGTAAAGATGGCCCACTTCTTGTTCATACAGCA
GTGTTGGCTGAAGGTTACCCTAACTGCTGAGGGCTGCCCACCCTCCTCACTCTGTTCCCCTTCC
TGGTCATCAAAGACATCAAGGGCCCTGAGCATATTAGACAAGCCCACAAGACCCATCTTTGTGG
GTTTATGGGATACTAGCCAGGCTGCTGGACAGACCTGCCATCCCACACACCTGGCACAAGAGGA
CAGAGAGTCCAAGAGGCAGTATGCAGATGTCCAGCTGCTTACATGAGGAGCTCTGGGAAGAGCT
GAGAGTAGCCCAGGTCCACCTCTGGACCTGGAGGGCCCAGGCCTGGCCAGGGAGTCTGTAGTCA
TCAATCAAAACCACCACAAAAGTAGCTTCCTTGTCCTTCACAGTCAGGGGGAGCCCTGATCCTG
GACTTCCACGTGGTTTCTGGTGTCAGCATAGCCTCCGGTGGCAGAACAGACCACAGACATCAAC
AGGAACATGGCCACGTTGAATGATTCTCCTTCCTCTGCTTCATCTGTTTAGCTGTCCTGTTGAG
GACTGTGGCTGAGCCTGTGTGTTTGTCCTTCAAGTGTGAGCTCCTCTTCTCTGCTTGCTCCTTG
AATAAAATCCCTCACCTGCACC

hide sequence

Promoters

RGD ID:

8671252

Promoter ID:

EPDNEW_M13657

Type:

initiation region

Name:

Lyzl4os_1

Description:

Mus musculus lysozyme-like 4, opposite strand , long non-codingRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	9	121,587,022 - 121,587,082	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000084995	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000156364	ENTREZGENE
MGD	MGI:1922634	ENTREZGENE
NCBI Gene	75384	ENTREZGENE
PhenoGen	Lyzl4os	PhenoGen
RNAcentral	URS00007599E6	RNACentral
UniGene	Mm.445955	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-11-26	Lyzl4os	lysozyme-like 4, opposite strand	4930596M17Rik	RIKEN cDNA 4930596M17 gene	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)