Lyzl4os (lysozyme-like 4, opposite strand) - Rat Genome Database
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Gene: Lyzl4os (lysozyme-like 4, opposite strand) Mus musculus
Analyze
Symbol: Lyzl4os
Name: lysozyme-like 4, opposite strand
RGD ID: 1614281
MGI Page MGI
Description:
Type: ncrna
RefSeq Status: VALIDATED
Also known as: 4930589B17Rik; 4930596M17Rik; hypothetical protein LOC75384; RIKEN cDNA 4930596M17 gene
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399121,416,086 - 121,443,321 (+)NCBIGRCm39mm39
GRCm389121,587,020 - 121,614,255 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9121,586,997 - 121,614,255 (+)EnsemblGRCm38mm10GRCm38
MGSCv379121,289,741 - 121,317,183 (+)NCBIGRCm37mm9NCBIm37
MGSCv369121,289,741 - 121,317,183 (+)NCBImm8
Celera9122,057,156 - 122,086,923 (+)NCBICelera
Cytogenetic Map9F4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:255
Count of miRNA genes:220
Interacting mature miRNAs:232
Transcripts:ENSMUST00000128080, ENSMUST00000156364
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000128080
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,586,997 - 121,603,981 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156364
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,587,020 - 121,614,255 (+)Ensembl
RefSeq Acc Id: ENSMUST00000213548
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,602,844 - 121,603,981 (+)Ensembl
RefSeq Acc Id: NR_040740
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,416,086 - 121,443,321 (+)NCBI
GRCm389121,587,020 - 121,614,255 (+)ENTREZGENE
Celera9122,057,156 - 122,086,923 (+)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
Promoters
RGD ID:8671252
Promoter ID:EPDNEW_M13657
Type:initiation region
Name:Lyzl4os_1
Description:Mus musculus lysozyme-like 4, opposite strand , long non-codingRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389121,587,022 - 121,587,082EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000084995 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000156364 ENTREZGENE
MGD MGI:1922634 ENTREZGENE
NCBI Gene 75384 ENTREZGENE
PhenoGen Lyzl4os PhenoGen
RNAcentral URS00007599E6 RNACentral
UniGene Mm.445955 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-26 Lyzl4os  lysozyme-like 4, opposite strand  4930596M17Rik  RIKEN cDNA 4930596M17 gene  Symbol and/or name change 5135510 APPROVED