Tnfrsf22 (tumor necrosis factor receptor superfamily, member 22) - Rat Genome Database

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Gene: Tnfrsf22 (tumor necrosis factor receptor superfamily, member 22) Mus musculus
Analyze
No known orthologs.
Symbol: Tnfrsf22
Name: tumor necrosis factor receptor superfamily, member 22
RGD ID: 1614255
MGI Page MGI
Description: Enables TRAIL binding activity. Acts upstream of or within negative regulation of extrinsic apoptotic signaling pathway via death domain receptors. Located in external side of plasma membrane. Is expressed in several structures, including liver; lung; placenta; spleen; and yolk sac.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810028K06Rik; C130035G06Rik; decoy TRAIL receptor 2; mDcTr; mDcTrailr2; S; SOBa; TNF receptor family member SOBa; TNF receptor homolog 2; Tnfr; Tnfrh2; Tnfrsf1al2; tumor necrosis factor receptor p60 homolog 2; tumor necrosis factor receptor superfamily member 22; tumor necrosis factor receptor superfamily, member 1a-like 2
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397143,188,540 - 143,203,412 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7143,188,543 - 143,203,398 (-)EnsemblGRCm39 Ensembl
GRCm387143,634,808 - 143,649,675 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7143,634,806 - 143,649,661 (-)EnsemblGRCm38mm10GRCm38
MGSCv377150,822,630 - 150,835,543 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367143,446,115 - 143,459,028 (-)NCBIMGSCv36mm8
Celera7143,392,418 - 143,405,331 (-)NCBICelera
Cytogenetic Map7F5NCBI
cM Map788.27NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11063728   PMID:11076861   PMID:11217851   PMID:12102730   PMID:12466268   PMID:12466851   PMID:12473685   PMID:12477932   PMID:14610273   PMID:16141072  
PMID:16141073   PMID:21873635   PMID:22595876   PMID:29973541  


Genomics

Variants

.
Variants in Tnfrsf22
337 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2269
Count of miRNA genes:678
Interacting mature miRNAs:828
Transcripts:ENSMUST00000075588, ENSMUST00000084396, ENSMUST00000129476, ENSMUST00000146692, ENSMUST00000149524, ENSMUST00000171066
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse
1300566Sluc8_msusceptibility to lung cancer 8 (mouse)Not determined7127398151144995196Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
1301773Stheal7_msoft tissue heal 7 (mouse)Not determined7119132573144995196Mouse
14746988Manh63_mmandible shape 63 (mouse)7127735437144995196Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
1357711Adbg1_madult body growth 1 (mouse)Not determined7118693381144398314Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
1301590Pbwg3_mpostnatal body weight growth 3 (mouse)Not determined7127311241144995196Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
1300677Bmd9_mbone mineral density 9 (mouse)Not determined7116634089144995196Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse

Markers in Region
Tnfrsf22  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F5UniSTS
cM Map769.57UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000075588   ⟹   ENSMUSP00000075018
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7143,188,545 - 143,203,398 (-)Ensembl
GRCm38.p6 Ensembl7143,634,808 - 143,649,661 (-)Ensembl
RefSeq Acc Id: ENSMUST00000084396   ⟹   ENSMUSP00000081432
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7143,192,995 - 143,203,389 (-)Ensembl
GRCm38.p6 Ensembl7143,639,258 - 143,649,652 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146692   ⟹   ENSMUSP00000119297
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7143,190,462 - 143,203,398 (-)Ensembl
GRCm38.p6 Ensembl7143,636,725 - 143,649,661 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171066   ⟹   ENSMUSP00000126384
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7143,188,543 - 143,190,322 (-)Ensembl
GRCm38.p6 Ensembl7143,634,806 - 143,636,585 (-)Ensembl
RefSeq Acc Id: NM_001311145   ⟹   NP_001298074
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397143,188,540 - 143,203,393 (-)NCBI
GRCm387143,634,808 - 143,649,664 (-)NCBI
Sequence:
RefSeq Acc Id: NM_023680   ⟹   NP_076169
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397143,188,540 - 143,203,393 (-)NCBI
GRCm387143,634,808 - 143,649,664 (-)NCBI
MGSCv377150,822,630 - 150,835,543 (-)RGD
Celera7143,392,418 - 143,405,331 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030243119   ⟹   XP_030098979
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397143,191,988 - 143,203,412 (-)NCBI
GRCm387143,638,443 - 143,649,675 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003946601
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397143,192,119 - 143,203,412 (-)NCBI
GRCm387143,638,382 - 143,649,675 (-)NCBI
Sequence:
RefSeq Acc Id: NP_076169   ⟸   NM_023680
- Peptide Label: isoform 1
- UniProtKB: Q9ER62 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001298074   ⟸   NM_001311145
- Peptide Label: isoform 2
- UniProtKB: Q8VHB9 (UniProtKB/Swiss-Prot),   Q9CZA4 (UniProtKB/Swiss-Prot),   Q9ER62 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030098979   ⟸   XM_030243119
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000081432   ⟸   ENSMUST00000084396
RefSeq Acc Id: ENSMUSP00000119297   ⟸   ENSMUST00000146692
RefSeq Acc Id: ENSMUSP00000126384   ⟸   ENSMUST00000171066
RefSeq Acc Id: ENSMUSP00000075018   ⟸   ENSMUST00000075588
Protein Domains
RNase H type-1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9ER62-F1-model_v2 AlphaFold Q9ER62 1-198 view protein structure

Promoters
RGD ID:8666261
Promoter ID:EPDNEW_M11162
Type:initiation region
Name:Tnfrsf22_1
Description:Mus musculus tumor necrosis factor receptor superfamily, member22 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387143,649,639 - 143,649,699EPDNEW
RGD ID:6842221
Promoter ID:MM_KWN:53401
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:ENSMUST00000084396,   OTTMUST00000082127,   OTTMUST00000082128,   OTTMUST00000082145,   OTTMUST00000082146
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367150,835,166 - 150,835,666 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1930270 AgrOrtholog
Ensembl Genes ENSMUSG00000010751 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000075588 ENTREZGENE
  ENSMUST00000075588.13 UniProtKB/Swiss-Prot
  ENSMUST00000084396.4 UniProtKB/Swiss-Prot
  ENSMUST00000146692 ENTREZGENE
  ENSMUST00000146692.8 UniProtKB/Swiss-Prot
  ENSMUST00000171066.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.10 UniProtKB/TrEMBL
  Tumor Necrosis Factor Receptor, subunit A, domain 2 UniProtKB/Swiss-Prot
InterPro RNaseH-like_dom UniProtKB/TrEMBL
  RNaseH_domain UniProtKB/TrEMBL
  RNaseH_sf UniProtKB/TrEMBL
  TNFR/NGFR_Cys_rich_reg UniProtKB/Swiss-Prot
  TNFRSF26_N UniProtKB/Swiss-Prot
KEGG Report mmu:79202 UniProtKB/Swiss-Prot
MGD MGI:1930270 ENTREZGENE
NCBI Gene 79202 ENTREZGENE
PANTHER TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 10B UniProtKB/Swiss-Prot
  TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 1A-LIKE UniProtKB/Swiss-Prot
Pfam RNase_H UniProtKB/TrEMBL
  TNFR_c6 UniProtKB/Swiss-Prot
PhenoGen Tnfrsf22 PhenoGen
PROSITE TNFR_NGFR_1 UniProtKB/Swiss-Prot
  TNFR_NGFR_2 UniProtKB/Swiss-Prot
SMART TNFR UniProtKB/Swiss-Prot
Superfamily-SCOP SSF53098 UniProtKB/TrEMBL
  TNF receptor-like UniProtKB/Swiss-Prot
UniProt Q78QS6_MOUSE UniProtKB/TrEMBL
  Q8VHB9 ENTREZGENE
  Q9CZA4 ENTREZGENE
  Q9ER62 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8VHB9 UniProtKB/Swiss-Prot
  Q9CZA4 UniProtKB/Swiss-Prot